Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS09275 and AMB_RS09280 are separated by 47 nucleotides AMB_RS09280 and AMB_RS09285 are separated by 185 nucleotides AMB_RS09285 and AMB_RS09290 overlap by 4 nucleotides
AMB_RS09275: AMB_RS09275 - arsenical pump-driving ATPase, at 1,970,897 to 1,972,603
_RS09275
AMB_RS09280: AMB_RS09280 - ArsR family transcriptional regulator, at 1,972,651 to 1,972,950
_RS09280
AMB_RS09285: AMB_RS09285 - RNA polymerase sigma factor, at 1,973,136 to 1,973,669
_RS09285
AMB_RS09290: AMB_RS09290 - MFS transporter, at 1,973,666 to 1,974,940
_RS09290
Position (kb) 1972
1973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1972.250 kb on - strand, within AMB_RS09275 at 1972.250 kb on - strand, within AMB_RS09275 at 1972.250 kb on - strand, within AMB_RS09275 at 1972.250 kb on - strand, within AMB_RS09275 at 1972.280 kb on + strand, within AMB_RS09275 at 1972.280 kb on + strand, within AMB_RS09275 at 1972.281 kb on - strand, within AMB_RS09275 at 1972.281 kb on - strand, within AMB_RS09275 at 1972.529 kb on + strand at 1972.529 kb on + strand at 1972.529 kb on + strand at 1972.529 kb on + strand at 1972.529 kb on + strand at 1972.650 kb on + strand at 1972.867 kb on + strand, within AMB_RS09280 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.867 kb on + strand, within AMB_RS09280 at 1972.868 kb on - strand, within AMB_RS09280 at 1972.907 kb on - strand, within AMB_RS09280 at 1973.043 kb on - strand at 1973.811 kb on + strand, within AMB_RS09290 at 1973.811 kb on + strand, within AMB_RS09290 at 1973.811 kb on + strand, within AMB_RS09290 at 1973.812 kb on - strand, within AMB_RS09290 at 1973.812 kb on - strand, within AMB_RS09290
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 1,972,250 - AMB_RS09275 0.79 -3.3 1,972,250 - AMB_RS09275 0.79 -0.1 1,972,250 - AMB_RS09275 0.79 -0.9 1,972,250 - AMB_RS09275 0.79 -1.1 1,972,280 + AMB_RS09275 0.81 +1.1 1,972,280 + AMB_RS09275 0.81 -0.9 1,972,281 - AMB_RS09275 0.81 -2.7 1,972,281 - AMB_RS09275 0.81 -0.1 1,972,529 + -1.3 1,972,529 + -0.1 1,972,529 + -0.1 1,972,529 + -0.6 1,972,529 + -0.6 1,972,650 + -0.1 1,972,867 + AMB_RS09280 0.72 -0.1 1,972,867 + AMB_RS09280 0.72 -2.1 1,972,867 + AMB_RS09280 0.72 -0.6 1,972,867 + AMB_RS09280 0.72 -3.1 1,972,868 - AMB_RS09280 0.72 -4.6 1,972,907 - AMB_RS09280 0.85 -2.0 1,973,043 - -0.7 1,973,811 + AMB_RS09290 0.11 +1.4 1,973,811 + AMB_RS09290 0.11 -3.5 1,973,811 + AMB_RS09290 0.11 -0.3 1,973,812 - AMB_RS09290 0.11 -1.7 1,973,812 - AMB_RS09290 0.11 -0.9
Or see this region's nucleotide sequence