Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS09145 and AMB_RS09150 overlap by 4 nucleotides AMB_RS09150 and AMB_RS09155 are separated by 87 nucleotides AMB_RS09155 and AMB_RS09160 are separated by 88 nucleotides AMB_RS09160 and AMB_RS09165 overlap by 4 nucleotides AMB_RS09165 and AMB_RS09170 are separated by 124 nucleotides
AMB_RS09145: AMB_RS09145 - copper-translocating P-type ATPase, at 1,947,203 to 1,949,410
_RS09145
AMB_RS09150: AMB_RS09150 - Cu(I)-responsive transcriptional regulator, at 1,949,407 to 1,949,799
_RS09150
AMB_RS09155: AMB_RS09155 - divergent polysaccharide deacetylase family protein, at 1,949,887 to 1,950,987
_RS09155
AMB_RS09160: AMB_RS09160 - copper chaperone, at 1,951,076 to 1,951,276
_RS09160
AMB_RS09165: AMB_RS09165 - hypothetical protein, at 1,951,273 to 1,951,842
_RS09165
AMB_RS09170: AMB_RS09170 - hypothetical protein, at 1,951,967 to 1,952,764
_RS09170
Position (kb) 1949
1950
1951 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1949.412 kb on + strand at 1949.461 kb on + strand, within AMB_RS09150 at 1949.462 kb on - strand, within AMB_RS09150 at 1949.522 kb on - strand, within AMB_RS09150 at 1949.523 kb on + strand, within AMB_RS09150 at 1949.827 kb on + strand at 1949.827 kb on + strand at 1949.827 kb on + strand at 1949.859 kb on + strand at 1950.406 kb on + strand, within AMB_RS09155 at 1950.406 kb on + strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.415 kb on + strand, within AMB_RS09155 at 1950.416 kb on - strand, within AMB_RS09155 at 1950.416 kb on - strand, within AMB_RS09155 at 1950.508 kb on + strand, within AMB_RS09155 at 1950.508 kb on + strand, within AMB_RS09155 at 1950.599 kb on - strand, within AMB_RS09155 at 1950.599 kb on - strand, within AMB_RS09155 at 1950.689 kb on + strand, within AMB_RS09155 at 1950.720 kb on + strand, within AMB_RS09155 at 1950.720 kb on + strand, within AMB_RS09155 at 1950.838 kb on + strand, within AMB_RS09155 at 1950.839 kb on - strand, within AMB_RS09155 at 1951.088 kb on + strand at 1951.089 kb on - strand at 1951.782 kb on + strand, within AMB_RS09165 at 1951.782 kb on + strand, within AMB_RS09165 at 1951.782 kb on + strand, within AMB_RS09165 at 1951.782 kb on + strand, within AMB_RS09165 at 1951.783 kb on - strand, within AMB_RS09165 at 1951.783 kb on - strand, within AMB_RS09165 at 1951.783 kb on - strand, within AMB_RS09165 at 1951.783 kb on - strand, within AMB_RS09165 at 1951.784 kb on + strand, within AMB_RS09165 at 1951.784 kb on + strand, within AMB_RS09165 at 1951.784 kb on + strand, within AMB_RS09165 at 1951.784 kb on + strand, within AMB_RS09165 at 1951.785 kb on - strand, within AMB_RS09165 at 1951.785 kb on - strand, within AMB_RS09165 at 1951.785 kb on - strand, within AMB_RS09165 at 1951.785 kb on - strand, within AMB_RS09165 at 1951.785 kb on - strand, within AMB_RS09165 at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.831 kb on + strand at 1951.832 kb on - strand at 1951.832 kb on - strand at 1951.832 kb on - strand at 1951.832 kb on - strand at 1951.832 kb on - strand at 1951.832 kb on - strand at 1951.832 kb on - strand at 1951.896 kb on + strand at 1951.897 kb on - strand at 1951.897 kb on - strand at 1951.937 kb on + strand at 1951.937 kb on + strand at 1951.937 kb on + strand at 1951.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 1,949,412 + -0.2 1,949,461 + AMB_RS09150 0.14 -1.7 1,949,462 - AMB_RS09150 0.14 -2.4 1,949,522 - AMB_RS09150 0.29 -1.0 1,949,523 + AMB_RS09150 0.30 -1.6 1,949,827 + -1.0 1,949,827 + +0.4 1,949,827 + -0.6 1,949,859 + -0.2 1,950,406 + AMB_RS09155 0.47 -1.4 1,950,406 + AMB_RS09155 0.47 -0.3 1,950,407 - AMB_RS09155 0.47 -1.9 1,950,407 - AMB_RS09155 0.47 -0.6 1,950,407 - AMB_RS09155 0.47 -3.1 1,950,407 - AMB_RS09155 0.47 +0.4 1,950,407 - AMB_RS09155 0.47 -0.3 1,950,415 + AMB_RS09155 0.48 -2.8 1,950,416 - AMB_RS09155 0.48 -2.9 1,950,416 - AMB_RS09155 0.48 -2.1 1,950,508 + AMB_RS09155 0.56 -0.3 1,950,508 + AMB_RS09155 0.56 -0.6 1,950,599 - AMB_RS09155 0.65 -0.6 1,950,599 - AMB_RS09155 0.65 +0.1 1,950,689 + AMB_RS09155 0.73 -1.4 1,950,720 + AMB_RS09155 0.76 +0.5 1,950,720 + AMB_RS09155 0.76 -0.2 1,950,838 + AMB_RS09155 0.86 +1.0 1,950,839 - AMB_RS09155 0.86 +0.2 1,951,088 + -2.0 1,951,089 - -2.0 1,951,782 + AMB_RS09165 0.89 -0.8 1,951,782 + AMB_RS09165 0.89 -0.6 1,951,782 + AMB_RS09165 0.89 -1.4 1,951,782 + AMB_RS09165 0.89 -2.4 1,951,783 - AMB_RS09165 0.89 -1.1 1,951,783 - AMB_RS09165 0.89 -4.1 1,951,783 - AMB_RS09165 0.89 -0.6 1,951,783 - AMB_RS09165 0.89 +1.1 1,951,784 + AMB_RS09165 0.90 -0.1 1,951,784 + AMB_RS09165 0.90 -2.1 1,951,784 + AMB_RS09165 0.90 +0.4 1,951,784 + AMB_RS09165 0.90 +0.4 1,951,785 - AMB_RS09165 0.90 +1.4 1,951,785 - AMB_RS09165 0.90 -2.0 1,951,785 - AMB_RS09165 0.90 -1.6 1,951,785 - AMB_RS09165 0.90 -0.2 1,951,785 - AMB_RS09165 0.90 -1.4 1,951,831 + +0.4 1,951,831 + -0.3 1,951,831 + -0.2 1,951,831 + -3.3 1,951,831 + +0.5 1,951,831 + -0.9 1,951,831 + -0.3 1,951,831 + +1.4 1,951,831 + +0.4 1,951,831 + +0.1 1,951,831 + -0.6 1,951,831 + +1.8 1,951,831 + -0.6 1,951,832 - -1.4 1,951,832 - -0.9 1,951,832 - -2.6 1,951,832 - -0.6 1,951,832 - -0.2 1,951,832 - -1.4 1,951,832 - -2.0 1,951,896 + -1.7 1,951,897 - +0.4 1,951,897 - -0.0 1,951,937 + -0.6 1,951,937 + +0.4 1,951,937 + -1.6 1,951,938 - -0.7
Or see this region's nucleotide sequence