Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07880 and AMB_RS07885 are separated by 81 nucleotides AMB_RS07885 and AMB_RS07890 are separated by 139 nucleotides AMB_RS07890 and AMB_RS07895 are separated by 26 nucleotides AMB_RS07895 and AMB_RS07900 are separated by 17 nucleotides AMB_RS07900 and AMB_RS07905 overlap by 29 nucleotides
AMB_RS07880: AMB_RS07880 - iron-sulfur cluster assembly accessory protein, at 1,693,417 to 1,693,755
_RS07880
AMB_RS07885: AMB_RS07885 - nitrogen fixation protein NifQ, at 1,693,837 to 1,694,454
_RS07885
AMB_RS07890: AMB_RS07890 - ferredoxin III, nif-specific, at 1,694,594 to 1,694,893
_RS07890
AMB_RS07895: AMB_RS07895 - DUF269 domain-containing protein, at 1,694,920 to 1,695,366
_RS07895
AMB_RS07900: AMB_RS07900 - nitrogen fixation protein NifX, at 1,695,384 to 1,695,884
_RS07900
AMB_RS07905: AMB_RS07905 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 1,695,856 to 1,697,214
_RS07905
Position (kb) 1694
1695 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1693.649 kb on + strand, within AMB_RS07880 at 1693.650 kb on - strand, within AMB_RS07880 at 1693.650 kb on - strand, within AMB_RS07880 at 1693.650 kb on - strand, within AMB_RS07880 at 1693.650 kb on - strand, within AMB_RS07880 at 1693.697 kb on + strand, within AMB_RS07880 at 1693.697 kb on + strand, within AMB_RS07880 at 1693.698 kb on - strand, within AMB_RS07880 at 1693.698 kb on - strand, within AMB_RS07880 at 1693.698 kb on - strand, within AMB_RS07880 at 1693.992 kb on - strand, within AMB_RS07885 at 1694.438 kb on + strand at 1694.438 kb on + strand at 1694.438 kb on + strand at 1694.438 kb on + strand at 1694.438 kb on + strand at 1694.439 kb on - strand at 1694.439 kb on - strand at 1694.439 kb on - strand at 1694.439 kb on - strand at 1694.439 kb on - strand at 1694.736 kb on + strand, within AMB_RS07890 at 1694.736 kb on + strand, within AMB_RS07890 at 1694.736 kb on + strand, within AMB_RS07890 at 1694.737 kb on - strand, within AMB_RS07890 at 1694.841 kb on + strand, within AMB_RS07890 at 1694.916 kb on + strand at 1694.942 kb on + strand at 1694.942 kb on + strand at 1694.942 kb on + strand at 1694.943 kb on - strand at 1695.041 kb on + strand, within AMB_RS07895 at 1695.041 kb on + strand, within AMB_RS07895 at 1695.042 kb on - strand, within AMB_RS07895 at 1695.042 kb on - strand, within AMB_RS07895 at 1695.042 kb on - strand, within AMB_RS07895 at 1695.170 kb on + strand, within AMB_RS07895 at 1695.244 kb on - strand, within AMB_RS07895 at 1695.249 kb on + strand, within AMB_RS07895 at 1695.250 kb on - strand, within AMB_RS07895 at 1695.251 kb on + strand, within AMB_RS07895 at 1695.252 kb on - strand, within AMB_RS07895 at 1695.252 kb on - strand, within AMB_RS07895 at 1695.252 kb on - strand, within AMB_RS07895 at 1695.252 kb on - strand, within AMB_RS07895 at 1695.727 kb on + strand, within AMB_RS07900 at 1695.727 kb on + strand, within AMB_RS07900 at 1695.728 kb on - strand, within AMB_RS07900
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 1,693,649 + AMB_RS07880 0.68 -1.5 1,693,650 - AMB_RS07880 0.69 -0.1 1,693,650 - AMB_RS07880 0.69 -0.0 1,693,650 - AMB_RS07880 0.69 -1.1 1,693,650 - AMB_RS07880 0.69 -2.2 1,693,697 + AMB_RS07880 0.83 -0.8 1,693,697 + AMB_RS07880 0.83 -0.3 1,693,698 - AMB_RS07880 0.83 -3.6 1,693,698 - AMB_RS07880 0.83 +0.5 1,693,698 - AMB_RS07880 0.83 +0.4 1,693,992 - AMB_RS07885 0.25 -2.1 1,694,438 + -0.3 1,694,438 + -2.7 1,694,438 + +1.1 1,694,438 + -0.5 1,694,438 + -1.1 1,694,439 - -3.2 1,694,439 - -0.0 1,694,439 - -1.3 1,694,439 - +1.6 1,694,439 - -0.8 1,694,736 + AMB_RS07890 0.47 +0.2 1,694,736 + AMB_RS07890 0.47 -0.1 1,694,736 + AMB_RS07890 0.47 -1.3 1,694,737 - AMB_RS07890 0.48 +0.2 1,694,841 + AMB_RS07890 0.82 -0.8 1,694,916 + +0.5 1,694,942 + -0.5 1,694,942 + -2.2 1,694,942 + -1.3 1,694,943 - -1.3 1,695,041 + AMB_RS07895 0.27 -0.6 1,695,041 + AMB_RS07895 0.27 -1.3 1,695,042 - AMB_RS07895 0.27 -3.9 1,695,042 - AMB_RS07895 0.27 +0.4 1,695,042 - AMB_RS07895 0.27 -0.1 1,695,170 + AMB_RS07895 0.56 -1.5 1,695,244 - AMB_RS07895 0.72 -1.3 1,695,249 + AMB_RS07895 0.74 -2.2 1,695,250 - AMB_RS07895 0.74 -0.1 1,695,251 + AMB_RS07895 0.74 +0.5 1,695,252 - AMB_RS07895 0.74 -0.6 1,695,252 - AMB_RS07895 0.74 +0.5 1,695,252 - AMB_RS07895 0.74 -1.1 1,695,252 - AMB_RS07895 0.74 -0.9 1,695,727 + AMB_RS07900 0.68 -0.5 1,695,727 + AMB_RS07900 0.68 -0.8 1,695,728 - AMB_RS07900 0.69 -3.8
Or see this region's nucleotide sequence