Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07630

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07620 and AMB_RS07625 overlap by 4 nucleotidesAMB_RS07625 and AMB_RS07630 are separated by 20 nucleotidesAMB_RS07630 and AMB_RS23305 overlap by 4 nucleotidesAMB_RS23305 and AMB_RS07640 overlap by 4 nucleotidesAMB_RS07640 and AMB_RS07645 overlap by 1 nucleotides AMB_RS07620: AMB_RS07620 - hypothetical protein, at 1,643,259 to 1,643,597 _RS07620 AMB_RS07625: AMB_RS07625 - hypothetical protein, at 1,643,594 to 1,644,244 _RS07625 AMB_RS07630: AMB_RS07630 - hypothetical protein, at 1,644,265 to 1,645,008 _RS07630 AMB_RS23305: AMB_RS23305 - hypothetical protein, at 1,645,005 to 1,645,634 _RS23305 AMB_RS07640: AMB_RS07640 - hypothetical protein, at 1,645,631 to 1,645,930 _RS07640 AMB_RS07645: AMB_RS07645 - hypothetical protein, at 1,645,930 to 1,646,199 _RS07645 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1643.587 kb on + strandat 1643.588 kb on - strandat 1644.135 kb on - strand, within AMB_RS07625at 1644.135 kb on - strand, within AMB_RS07625at 1644.135 kb on - strand, within AMB_RS07625at 1644.611 kb on + strand, within AMB_RS07630at 1644.612 kb on - strand, within AMB_RS07630at 1644.642 kb on - strand, within AMB_RS07630at 1644.777 kb on + strand, within AMB_RS07630at 1645.363 kb on - strand, within AMB_RS23305at 1645.363 kb on - strand, within AMB_RS23305at 1645.363 kb on - strand, within AMB_RS23305at 1645.447 kb on - strand, within AMB_RS23305at 1645.746 kb on - strand, within AMB_RS07640at 1645.914 kb on - strandat 1645.914 kb on - strandat 1645.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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1,643,587 + -1.9
1,643,588 - -3.2
1,644,135 - AMB_RS07625 0.83 +0.5
1,644,135 - AMB_RS07625 0.83 +0.2
1,644,135 - AMB_RS07625 0.83 -0.1
1,644,611 + AMB_RS07630 0.47 -0.5
1,644,612 - AMB_RS07630 0.47 -3.8
1,644,642 - AMB_RS07630 0.51 -0.1
1,644,777 + AMB_RS07630 0.69 -1.6
1,645,363 - AMB_RS23305 0.57 -0.9
1,645,363 - AMB_RS23305 0.57 -0.1
1,645,363 - AMB_RS23305 0.57 -0.6
1,645,447 - AMB_RS23305 0.70 +0.7
1,645,746 - AMB_RS07640 0.38 +0.1
1,645,914 - -2.5
1,645,914 - -1.9
1,645,914 - -0.6

Or see this region's nucleotide sequence