Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06320

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06315 and AMB_RS06320 are separated by 131 nucleotidesAMB_RS06320 and AMB_RS06325 are separated by 0 nucleotidesAMB_RS06325 and AMB_RS06330 are separated by 13 nucleotides AMB_RS06315: AMB_RS06315 - acyl-CoA synthetase, at 1,324,959 to 1,326,929 _RS06315 AMB_RS06320: AMB_RS06320 - phenylacetate--CoA ligase, at 1,327,061 to 1,328,359 _RS06320 AMB_RS06325: AMB_RS06325 - metal-binding protein, at 1,328,360 to 1,328,782 _RS06325 AMB_RS06330: AMB_RS06330 - cytochrome c, at 1,328,796 to 1,329,530 _RS06330 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -3 -2 -1 0 1at 1326.070 kb on - strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.108 kb on + strand, within AMB_RS06315at 1326.109 kb on - strand, within AMB_RS06315at 1326.109 kb on - strand, within AMB_RS06315at 1326.109 kb on - strand, within AMB_RS06315at 1326.109 kb on - strand, within AMB_RS06315at 1326.343 kb on - strand, within AMB_RS06315at 1326.365 kb on + strand, within AMB_RS06315at 1326.365 kb on + strand, within AMB_RS06315at 1326.366 kb on - strand, within AMB_RS06315at 1326.366 kb on - strand, within AMB_RS06315at 1326.366 kb on - strand, within AMB_RS06315at 1326.366 kb on - strand, within AMB_RS06315at 1326.366 kb on - strand, within AMB_RS06315at 1326.366 kb on - strand, within AMB_RS06315at 1326.627 kb on - strand, within AMB_RS06315at 1326.627 kb on - strand, within AMB_RS06315at 1326.805 kb on - strandat 1326.888 kb on + strandat 1326.888 kb on + strandat 1326.888 kb on + strandat 1326.927 kb on + strandat 1327.013 kb on + strandat 1327.024 kb on + strandat 1327.024 kb on + strandat 1327.024 kb on + strandat 1327.025 kb on - strandat 1327.025 kb on - strandat 1327.025 kb on - strandat 1327.025 kb on - strandat 1327.028 kb on + strandat 1327.028 kb on + strandat 1327.029 kb on - strandat 1327.029 kb on - strandat 1327.029 kb on - strandat 1327.029 kb on - strandat 1327.154 kb on + strandat 1327.154 kb on + strandat 1327.155 kb on - strandat 1327.155 kb on - strandat 1327.155 kb on - strandat 1327.155 kb on - strandat 1327.155 kb on - strandat 1327.278 kb on - strand, within AMB_RS06320at 1327.278 kb on - strand, within AMB_RS06320at 1327.278 kb on - strand, within AMB_RS06320at 1327.278 kb on - strand, within AMB_RS06320at 1327.278 kb on - strand, within AMB_RS06320at 1327.278 kb on - strand, within AMB_RS06320at 1327.368 kb on - strand, within AMB_RS06320at 1327.460 kb on + strand, within AMB_RS06320at 1327.460 kb on + strand, within AMB_RS06320at 1327.460 kb on + strand, within AMB_RS06320at 1327.500 kb on - strand, within AMB_RS06320at 1327.500 kb on - strand, within AMB_RS06320at 1327.613 kb on + strand, within AMB_RS06320at 1327.614 kb on - strand, within AMB_RS06320at 1327.614 kb on - strand, within AMB_RS06320at 1327.614 kb on - strand, within AMB_RS06320at 1327.614 kb on - strand, within AMB_RS06320at 1327.614 kb on - strand, within AMB_RS06320at 1327.763 kb on + strand, within AMB_RS06320at 1327.763 kb on + strand, within AMB_RS06320at 1327.763 kb on + strand, within AMB_RS06320at 1327.763 kb on + strand, within AMB_RS06320at 1327.763 kb on + strand, within AMB_RS06320at 1327.764 kb on - strand, within AMB_RS06320at 1327.764 kb on - strand, within AMB_RS06320at 1327.764 kb on - strand, within AMB_RS06320at 1327.764 kb on - strand, within AMB_RS06320at 1327.764 kb on - strand, within AMB_RS06320at 1327.764 kb on - strand, within AMB_RS06320at 1328.076 kb on - strand, within AMB_RS06320at 1328.129 kb on + strand, within AMB_RS06320at 1328.129 kb on + strand, within AMB_RS06320at 1328.129 kb on + strand, within AMB_RS06320at 1328.130 kb on - strand, within AMB_RS06320at 1328.358 kb on - strandat 1328.542 kb on - strand, within AMB_RS06325at 1328.542 kb on - strand, within AMB_RS06325at 1328.592 kb on + strand, within AMB_RS06325at 1328.592 kb on + strand, within AMB_RS06325at 1328.644 kb on - strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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1,326,070 - AMB_RS06315 0.56 -0.1
1,326,108 + AMB_RS06315 0.58 +0.6
1,326,108 + AMB_RS06315 0.58 -0.1
1,326,108 + AMB_RS06315 0.58 -0.4
1,326,108 + AMB_RS06315 0.58 -0.8
1,326,108 + AMB_RS06315 0.58 -0.5
1,326,108 + AMB_RS06315 0.58 -1.4
1,326,108 + AMB_RS06315 0.58 -0.6
1,326,109 - AMB_RS06315 0.58 +0.1
1,326,109 - AMB_RS06315 0.58 +0.3
1,326,109 - AMB_RS06315 0.58 -0.4
1,326,109 - AMB_RS06315 0.58 -0.5
1,326,343 - AMB_RS06315 0.70 +0.6
1,326,365 + AMB_RS06315 0.71 -0.1
1,326,365 + AMB_RS06315 0.71 +1.6
1,326,366 - AMB_RS06315 0.71 -1.2
1,326,366 - AMB_RS06315 0.71 -0.2
1,326,366 - AMB_RS06315 0.71 -0.4
1,326,366 - AMB_RS06315 0.71 +0.4
1,326,366 - AMB_RS06315 0.71 -1.0
1,326,366 - AMB_RS06315 0.71 +0.3
1,326,627 - AMB_RS06315 0.85 -1.4
1,326,627 - AMB_RS06315 0.85 -1.9
1,326,805 - -0.4
1,326,888 + -0.5
1,326,888 + -2.0
1,326,888 + +0.9
1,326,927 + -1.6
1,327,013 + -0.4
1,327,024 + -0.6
1,327,024 + -2.1
1,327,024 + -0.0
1,327,025 - -1.2
1,327,025 - +0.4
1,327,025 - -0.4
1,327,025 - -2.8
1,327,028 + +0.1
1,327,028 + +0.5
1,327,029 - -0.0
1,327,029 - -0.0
1,327,029 - -1.6
1,327,029 - +0.6
1,327,154 + -1.2
1,327,154 + -0.3
1,327,155 - -1.0
1,327,155 - -1.2
1,327,155 - +0.2
1,327,155 - -0.5
1,327,155 - +0.6
1,327,278 - AMB_RS06320 0.17 -0.4
1,327,278 - AMB_RS06320 0.17 -0.8
1,327,278 - AMB_RS06320 0.17 -1.6
1,327,278 - AMB_RS06320 0.17 -0.2
1,327,278 - AMB_RS06320 0.17 +0.5
1,327,278 - AMB_RS06320 0.17 -0.1
1,327,368 - AMB_RS06320 0.24 -0.0
1,327,460 + AMB_RS06320 0.31 -0.7
1,327,460 + AMB_RS06320 0.31 +0.1
1,327,460 + AMB_RS06320 0.31 -0.4
1,327,500 - AMB_RS06320 0.34 -0.7
1,327,500 - AMB_RS06320 0.34 -1.9
1,327,613 + AMB_RS06320 0.42 -1.9
1,327,614 - AMB_RS06320 0.43 -0.4
1,327,614 - AMB_RS06320 0.43 -2.3
1,327,614 - AMB_RS06320 0.43 -1.5
1,327,614 - AMB_RS06320 0.43 -1.4
1,327,614 - AMB_RS06320 0.43 -1.0
1,327,763 + AMB_RS06320 0.54 -0.8
1,327,763 + AMB_RS06320 0.54 -0.1
1,327,763 + AMB_RS06320 0.54 +0.1
1,327,763 + AMB_RS06320 0.54 -1.0
1,327,763 + AMB_RS06320 0.54 +0.0
1,327,764 - AMB_RS06320 0.54 -1.9
1,327,764 - AMB_RS06320 0.54 +0.2
1,327,764 - AMB_RS06320 0.54 -2.0
1,327,764 - AMB_RS06320 0.54 +0.6
1,327,764 - AMB_RS06320 0.54 -0.8
1,327,764 - AMB_RS06320 0.54 +0.3
1,328,076 - AMB_RS06320 0.78 -0.8
1,328,129 + AMB_RS06320 0.82 -0.4
1,328,129 + AMB_RS06320 0.82 -0.4
1,328,129 + AMB_RS06320 0.82 -1.0
1,328,130 - AMB_RS06320 0.82 +1.0
1,328,358 - -1.2
1,328,542 - AMB_RS06325 0.43 -0.4
1,328,542 - AMB_RS06325 0.43 -0.2
1,328,592 + AMB_RS06325 0.55 -0.0
1,328,592 + AMB_RS06325 0.55 -0.4
1,328,644 - AMB_RS06325 0.67 -0.0
1,328,659 + AMB_RS06325 0.71 -1.2
1,328,659 + AMB_RS06325 0.71 -1.9
1,328,659 + AMB_RS06325 0.71 -0.1
1,328,659 + AMB_RS06325 0.71 +0.7
1,328,660 - AMB_RS06325 0.71 -0.0
1,328,660 - AMB_RS06325 0.71 +0.2
1,328,660 - AMB_RS06325 0.71 +0.8
1,328,660 - AMB_RS06325 0.71 -0.4
1,328,881 + AMB_RS06330 0.12 -0.8
1,328,881 + AMB_RS06330 0.12 -2.3
1,328,881 + AMB_RS06330 0.12 -0.5
1,328,881 + AMB_RS06330 0.12 -3.3
1,328,882 - AMB_RS06330 0.12 +0.9
1,328,882 - AMB_RS06330 0.12 -0.6
1,328,882 - AMB_RS06330 0.12 -1.9
1,328,882 - AMB_RS06330 0.12 -1.6
1,328,882 - AMB_RS06330 0.12 -0.5
1,328,951 + AMB_RS06330 0.21 -0.4
1,328,951 + AMB_RS06330 0.21 -2.4
1,328,951 + AMB_RS06330 0.21 -2.0
1,328,951 + AMB_RS06330 0.21 +0.8
1,328,952 - AMB_RS06330 0.21 -3.3
1,328,952 - AMB_RS06330 0.21 -0.0
1,328,952 - AMB_RS06330 0.21 +0.8
1,328,952 - AMB_RS06330 0.21 -1.1
1,328,952 - AMB_RS06330 0.21 -0.8
1,328,952 - AMB_RS06330 0.21 -1.2
1,328,952 - AMB_RS06330 0.21 +1.4
1,328,952 - AMB_RS06330 0.21 -0.0
1,329,019 + AMB_RS06330 0.30 -0.0
1,329,019 + AMB_RS06330 0.30 +0.6
1,329,019 + AMB_RS06330 0.30 +0.6
1,329,020 - AMB_RS06330 0.30 -2.0
1,329,020 - AMB_RS06330 0.30 -1.0
1,329,020 - AMB_RS06330 0.30 -1.2
1,329,020 - AMB_RS06330 0.30 -1.4

Or see this region's nucleotide sequence