Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06025

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06010 and AMB_RS06015 are separated by 11 nucleotidesAMB_RS06015 and AMB_RS06020 are separated by 4 nucleotidesAMB_RS06020 and AMB_RS06025 are separated by 2 nucleotidesAMB_RS06025 and AMB_RS06030 are separated by 2 nucleotidesAMB_RS06030 and AMB_RS06035 are separated by 29 nucleotidesAMB_RS06035 and AMB_RS06040 overlap by 8 nucleotides AMB_RS06010: AMB_RS06010 - hypothetical protein, at 1,260,394 to 1,261,263 _RS06010 AMB_RS06015: AMB_RS06015 - hypothetical protein, at 1,261,275 to 1,261,685 _RS06015 AMB_RS06020: AMB_RS06020 - hypothetical protein, at 1,261,690 to 1,262,256 _RS06020 AMB_RS06025: AMB_RS06025 - hypothetical protein, at 1,262,259 to 1,263,602 _RS06025 AMB_RS06030: AMB_RS06030 - hypothetical protein, at 1,263,605 to 1,264,042 _RS06030 AMB_RS06035: AMB_RS06035 - hypothetical protein, at 1,264,072 to 1,264,422 _RS06035 AMB_RS06040: AMB_RS06040 - DUF1833 domain-containing protein, at 1,264,415 to 1,264,939 _RS06040 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1261.434 kb on + strand, within AMB_RS06015at 1261.435 kb on - strand, within AMB_RS06015at 1261.444 kb on + strand, within AMB_RS06015at 1261.479 kb on + strand, within AMB_RS06015at 1261.479 kb on + strand, within AMB_RS06015at 1261.479 kb on + strand, within AMB_RS06015at 1261.480 kb on - strand, within AMB_RS06015at 1261.492 kb on + strand, within AMB_RS06015at 1261.493 kb on - strand, within AMB_RS06015at 1261.493 kb on - strand, within AMB_RS06015at 1261.672 kb on - strandat 1261.672 kb on - strandat 1262.005 kb on + strand, within AMB_RS06020at 1262.131 kb on + strand, within AMB_RS06020at 1262.158 kb on + strand, within AMB_RS06020at 1262.158 kb on + strand, within AMB_RS06020at 1262.191 kb on + strand, within AMB_RS06020at 1262.192 kb on - strand, within AMB_RS06020at 1262.192 kb on - strand, within AMB_RS06020at 1262.192 kb on - strand, within AMB_RS06020at 1262.215 kb on + strandat 1262.215 kb on + strandat 1262.215 kb on + strandat 1262.215 kb on + strandat 1262.216 kb on - strandat 1262.216 kb on - strandat 1262.216 kb on - strandat 1262.265 kb on - strandat 1262.392 kb on - strandat 1262.392 kb on - strandat 1262.428 kb on - strand, within AMB_RS06025at 1262.428 kb on - strand, within AMB_RS06025at 1262.442 kb on + strand, within AMB_RS06025at 1262.442 kb on + strand, within AMB_RS06025at 1262.493 kb on + strand, within AMB_RS06025at 1262.494 kb on - strand, within AMB_RS06025at 1262.494 kb on - strand, within AMB_RS06025at 1262.494 kb on - strand, within AMB_RS06025at 1262.496 kb on - strand, within AMB_RS06025at 1262.519 kb on + strand, within AMB_RS06025at 1262.520 kb on - strand, within AMB_RS06025at 1262.541 kb on + strand, within AMB_RS06025at 1262.592 kb on - strand, within AMB_RS06025at 1262.631 kb on + strand, within AMB_RS06025at 1263.095 kb on - strand, within AMB_RS06025at 1263.114 kb on + strand, within AMB_RS06025at 1263.114 kb on + strand, within AMB_RS06025at 1263.115 kb on - strand, within AMB_RS06025at 1263.115 kb on - strand, within AMB_RS06025at 1263.159 kb on - strand, within AMB_RS06025at 1263.199 kb on - strand, within AMB_RS06025at 1263.199 kb on - strand, within AMB_RS06025at 1263.199 kb on - strand, within AMB_RS06025at 1263.258 kb on + strand, within AMB_RS06025at 1263.279 kb on + strand, within AMB_RS06025at 1263.279 kb on + strand, within AMB_RS06025at 1263.282 kb on + strand, within AMB_RS06025at 1263.282 kb on + strand, within AMB_RS06025at 1263.282 kb on + strand, within AMB_RS06025at 1263.288 kb on + strand, within AMB_RS06025at 1263.337 kb on - strand, within AMB_RS06025at 1263.337 kb on - strand, within AMB_RS06025at 1263.351 kb on + strand, within AMB_RS06025at 1263.415 kb on - strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.447 kb on + strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.448 kb on - strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.449 kb on + strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.450 kb on - strand, within AMB_RS06025at 1263.535 kb on - strandat 1263.668 kb on + strand, within AMB_RS06030at 1263.669 kb on - strand, within AMB_RS06030at 1263.737 kb on + strand, within AMB_RS06030at 1263.944 kb on + strand, within AMB_RS06030at 1263.944 kb on + strand, within AMB_RS06030at 1263.944 kb on + strand, within AMB_RS06030at 1263.945 kb on - strand, within AMB_RS06030at 1264.041 kb on - strandat 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.117 kb on + strand, within AMB_RS06035at 1264.410 kb on + strandat 1264.490 kb on - strand, within AMB_RS06040

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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1,261,434 + AMB_RS06015 0.39 -0.0
1,261,435 - AMB_RS06015 0.39 -1.0
1,261,444 + AMB_RS06015 0.41 -1.8
1,261,479 + AMB_RS06015 0.50 +0.2
1,261,479 + AMB_RS06015 0.50 -0.3
1,261,479 + AMB_RS06015 0.50 -1.5
1,261,480 - AMB_RS06015 0.50 +0.4
1,261,492 + AMB_RS06015 0.53 +0.8
1,261,493 - AMB_RS06015 0.53 -3.4
1,261,493 - AMB_RS06015 0.53 +1.0
1,261,672 - +1.9
1,261,672 - -0.4
1,262,005 + AMB_RS06020 0.56 -1.6
1,262,131 + AMB_RS06020 0.78 +1.0
1,262,158 + AMB_RS06020 0.83 -3.1
1,262,158 + AMB_RS06020 0.83 -0.8
1,262,191 + AMB_RS06020 0.88 -1.6
1,262,192 - AMB_RS06020 0.89 -0.5
1,262,192 - AMB_RS06020 0.89 +0.5
1,262,192 - AMB_RS06020 0.89 -0.8
1,262,215 + +1.0
1,262,215 + -0.0
1,262,215 + -0.2
1,262,215 + -1.9
1,262,216 - -1.4
1,262,216 - +0.6
1,262,216 - -0.4
1,262,265 - -0.8
1,262,392 - +0.2
1,262,392 - -1.8
1,262,428 - AMB_RS06025 0.13 -1.4
1,262,428 - AMB_RS06025 0.13 -1.6
1,262,442 + AMB_RS06025 0.14 -1.6
1,262,442 + AMB_RS06025 0.14 -0.4
1,262,493 + AMB_RS06025 0.17 -0.4
1,262,494 - AMB_RS06025 0.17 +0.6
1,262,494 - AMB_RS06025 0.17 -1.6
1,262,494 - AMB_RS06025 0.17 -1.4
1,262,496 - AMB_RS06025 0.18 -1.2
1,262,519 + AMB_RS06025 0.19 -2.6
1,262,520 - AMB_RS06025 0.19 -0.4
1,262,541 + AMB_RS06025 0.21 -3.4
1,262,592 - AMB_RS06025 0.25 -1.2
1,262,631 + AMB_RS06025 0.28 -0.8
1,263,095 - AMB_RS06025 0.62 +0.6
1,263,114 + AMB_RS06025 0.64 -3.4
1,263,114 + AMB_RS06025 0.64 -1.0
1,263,115 - AMB_RS06025 0.64 -0.3
1,263,115 - AMB_RS06025 0.64 +0.0
1,263,159 - AMB_RS06025 0.67 +0.6
1,263,199 - AMB_RS06025 0.70 -2.0
1,263,199 - AMB_RS06025 0.70 -0.2
1,263,199 - AMB_RS06025 0.70 -0.4
1,263,258 + AMB_RS06025 0.74 +0.8
1,263,279 + AMB_RS06025 0.76 -4.3
1,263,279 + AMB_RS06025 0.76 -0.4
1,263,282 + AMB_RS06025 0.76 -1.3
1,263,282 + AMB_RS06025 0.76 -0.5
1,263,282 + AMB_RS06025 0.76 +0.2
1,263,288 + AMB_RS06025 0.77 -0.3
1,263,337 - AMB_RS06025 0.80 -0.2
1,263,337 - AMB_RS06025 0.80 +0.5
1,263,351 + AMB_RS06025 0.81 -0.4
1,263,415 - AMB_RS06025 0.86 -2.0
1,263,447 + AMB_RS06025 0.88 -0.4
1,263,447 + AMB_RS06025 0.88 -0.9
1,263,447 + AMB_RS06025 0.88 +0.8
1,263,447 + AMB_RS06025 0.88 +0.4
1,263,447 + AMB_RS06025 0.88 +1.8
1,263,447 + AMB_RS06025 0.88 +0.1
1,263,447 + AMB_RS06025 0.88 -1.9
1,263,447 + AMB_RS06025 0.88 -1.0
1,263,447 + AMB_RS06025 0.88 +0.3
1,263,447 + AMB_RS06025 0.88 +2.1
1,263,447 + AMB_RS06025 0.88 -0.8
1,263,447 + AMB_RS06025 0.88 -0.6
1,263,447 + AMB_RS06025 0.88 +0.5
1,263,448 - AMB_RS06025 0.88 +0.2
1,263,448 - AMB_RS06025 0.88 -2.0
1,263,448 - AMB_RS06025 0.88 +4.0
1,263,448 - AMB_RS06025 0.88 -0.4
1,263,448 - AMB_RS06025 0.88 +1.6
1,263,448 - AMB_RS06025 0.88 -0.9
1,263,448 - AMB_RS06025 0.88 -2.2
1,263,448 - AMB_RS06025 0.88 -4.6
1,263,448 - AMB_RS06025 0.88 +0.2
1,263,448 - AMB_RS06025 0.88 +0.6
1,263,448 - AMB_RS06025 0.88 -0.0
1,263,448 - AMB_RS06025 0.88 -0.3
1,263,448 - AMB_RS06025 0.88 -3.1
1,263,448 - AMB_RS06025 0.88 -1.0
1,263,448 - AMB_RS06025 0.88 +0.7
1,263,449 + AMB_RS06025 0.89 -2.3
1,263,449 + AMB_RS06025 0.89 -3.8
1,263,449 + AMB_RS06025 0.89 -2.6
1,263,449 + AMB_RS06025 0.89 +0.8
1,263,449 + AMB_RS06025 0.89 +1.0
1,263,449 + AMB_RS06025 0.89 +1.6
1,263,450 - AMB_RS06025 0.89 -1.4
1,263,450 - AMB_RS06025 0.89 +0.3
1,263,450 - AMB_RS06025 0.89 +0.6
1,263,450 - AMB_RS06025 0.89 -1.0
1,263,450 - AMB_RS06025 0.89 -1.8
1,263,450 - AMB_RS06025 0.89 -2.2
1,263,450 - AMB_RS06025 0.89 -1.8
1,263,450 - AMB_RS06025 0.89 -0.4
1,263,450 - AMB_RS06025 0.89 -2.3
1,263,450 - AMB_RS06025 0.89 -0.1
1,263,535 - -0.0
1,263,668 + AMB_RS06030 0.14 +0.6
1,263,669 - AMB_RS06030 0.15 +0.6
1,263,737 + AMB_RS06030 0.30 -1.8
1,263,944 + AMB_RS06030 0.77 -0.0
1,263,944 + AMB_RS06030 0.77 -0.4
1,263,944 + AMB_RS06030 0.77 -2.0
1,263,945 - AMB_RS06030 0.78 +0.2
1,264,041 - -2.2
1,264,117 + AMB_RS06035 0.13 -0.2
1,264,117 + AMB_RS06035 0.13 -0.2
1,264,117 + AMB_RS06035 0.13 -1.6
1,264,117 + AMB_RS06035 0.13 -4.1
1,264,117 + AMB_RS06035 0.13 +0.6
1,264,117 + AMB_RS06035 0.13 -1.3
1,264,410 + -0.5
1,264,490 - AMB_RS06040 0.14 -1.5

Or see this region's nucleotide sequence