Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05890

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05880 and AMB_RS05885 overlap by 4 nucleotidesAMB_RS05885 and AMB_RS05890 are separated by 2 nucleotidesAMB_RS05890 and AMB_RS05895 overlap by 14 nucleotidesAMB_RS05895 and AMB_RS05900 are separated by 257 nucleotidesAMB_RS05900 and AMB_RS05905 are separated by 86 nucleotides AMB_RS05880: AMB_RS05880 - DNA cytosine methyltransferase, at 1,239,353 to 1,241,215 _RS05880 AMB_RS05885: AMB_RS05885 - 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase/FAD synthetase, at 1,241,212 to 1,242,078 _RS05885 AMB_RS05890: AMB_RS05890 - DNA methylase, at 1,242,081 to 1,243,349 _RS05890 AMB_RS05895: AMB_RS05895 - hypothetical protein, at 1,243,336 to 1,243,545 _RS05895 AMB_RS05900: AMB_RS05900 - hypothetical protein, at 1,243,803 to 1,244,015 _RS05900 AMB_RS05905: AMB_RS05905 - DNA-binding protein, at 1,244,102 to 1,244,356 _RS05905 Position (kb) 1242 1243 1244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1241.147 kb on - strandat 1241.282 kb on - strandat 1241.473 kb on + strand, within AMB_RS05885at 1241.474 kb on - strand, within AMB_RS05885at 1241.474 kb on - strand, within AMB_RS05885at 1241.566 kb on + strand, within AMB_RS05885at 1241.567 kb on - strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.842 kb on + strand, within AMB_RS05885at 1241.843 kb on - strand, within AMB_RS05885at 1241.843 kb on - strand, within AMB_RS05885at 1242.348 kb on + strand, within AMB_RS05890at 1242.348 kb on + strand, within AMB_RS05890at 1242.348 kb on + strand, within AMB_RS05890at 1242.348 kb on + strand, within AMB_RS05890at 1242.348 kb on + strand, within AMB_RS05890at 1242.349 kb on - strand, within AMB_RS05890at 1242.349 kb on - strand, within AMB_RS05890at 1242.439 kb on - strand, within AMB_RS05890at 1242.439 kb on - strand, within AMB_RS05890at 1242.705 kb on + strand, within AMB_RS05890at 1242.706 kb on - strand, within AMB_RS05890at 1242.706 kb on - strand, within AMB_RS05890at 1242.825 kb on + strand, within AMB_RS05890at 1242.825 kb on + strand, within AMB_RS05890at 1242.825 kb on + strand, within AMB_RS05890at 1242.825 kb on + strand, within AMB_RS05890at 1242.825 kb on + strand, within AMB_RS05890at 1242.825 kb on + strand, within AMB_RS05890at 1242.826 kb on - strand, within AMB_RS05890at 1242.826 kb on - strand, within AMB_RS05890at 1242.846 kb on + strand, within AMB_RS05890at 1242.846 kb on + strand, within AMB_RS05890at 1242.846 kb on + strand, within AMB_RS05890at 1242.847 kb on - strand, within AMB_RS05890at 1242.945 kb on + strand, within AMB_RS05890at 1242.946 kb on - strand, within AMB_RS05890at 1242.946 kb on - strand, within AMB_RS05890at 1242.946 kb on - strand, within AMB_RS05890at 1242.972 kb on + strand, within AMB_RS05890at 1242.972 kb on + strand, within AMB_RS05890at 1242.973 kb on - strand, within AMB_RS05890at 1242.973 kb on - strand, within AMB_RS05890at 1242.973 kb on - strand, within AMB_RS05890at 1243.233 kb on + strandat 1243.268 kb on - strandat 1243.268 kb on - strandat 1243.268 kb on - strandat 1243.268 kb on - strandat 1243.371 kb on - strand, within AMB_RS05895at 1243.371 kb on - strand, within AMB_RS05895at 1243.457 kb on + strand, within AMB_RS05895at 1243.458 kb on - strand, within AMB_RS05895at 1243.476 kb on - strand, within AMB_RS05895at 1243.476 kb on - strand, within AMB_RS05895at 1243.545 kb on + strandat 1243.546 kb on - strandat 1243.546 kb on - strandat 1243.548 kb on + strandat 1243.548 kb on + strandat 1243.548 kb on + strandat 1243.549 kb on - strandat 1243.549 kb on - strandat 1243.549 kb on - strandat 1243.549 kb on - strandat 1243.572 kb on + strandat 1243.573 kb on - strandat 1243.573 kb on - strandat 1243.977 kb on + strand, within AMB_RS05900at 1243.978 kb on - strand, within AMB_RS05900at 1243.978 kb on - strand, within AMB_RS05900at 1244.049 kb on + strandat 1244.049 kb on + strandat 1244.050 kb on - strandat 1244.092 kb on + strandat 1244.093 kb on - strandat 1244.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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1,241,147 - -0.3
1,241,282 - -1.6
1,241,473 + AMB_RS05885 0.30 -0.5
1,241,474 - AMB_RS05885 0.30 +0.9
1,241,474 - AMB_RS05885 0.30 -0.6
1,241,566 + AMB_RS05885 0.41 -4.0
1,241,567 - AMB_RS05885 0.41 -0.0
1,241,842 + AMB_RS05885 0.73 +0.9
1,241,842 + AMB_RS05885 0.73 -0.2
1,241,842 + AMB_RS05885 0.73 -1.6
1,241,842 + AMB_RS05885 0.73 -0.5
1,241,843 - AMB_RS05885 0.73 -4.4
1,241,843 - AMB_RS05885 0.73 +0.5
1,242,348 + AMB_RS05890 0.21 -2.4
1,242,348 + AMB_RS05890 0.21 -0.5
1,242,348 + AMB_RS05890 0.21 -1.9
1,242,348 + AMB_RS05890 0.21 -1.2
1,242,348 + AMB_RS05890 0.21 -1.2
1,242,349 - AMB_RS05890 0.21 +1.6
1,242,349 - AMB_RS05890 0.21 +1.9
1,242,439 - AMB_RS05890 0.28 -0.4
1,242,439 - AMB_RS05890 0.28 -2.0
1,242,705 + AMB_RS05890 0.49 +1.6
1,242,706 - AMB_RS05890 0.49 -1.6
1,242,706 - AMB_RS05890 0.49 -1.4
1,242,825 + AMB_RS05890 0.59 +0.8
1,242,825 + AMB_RS05890 0.59 -2.2
1,242,825 + AMB_RS05890 0.59 -1.0
1,242,825 + AMB_RS05890 0.59 -1.4
1,242,825 + AMB_RS05890 0.59 -1.4
1,242,825 + AMB_RS05890 0.59 -1.0
1,242,826 - AMB_RS05890 0.59 -0.0
1,242,826 - AMB_RS05890 0.59 -1.0
1,242,846 + AMB_RS05890 0.60 -0.9
1,242,846 + AMB_RS05890 0.60 -2.1
1,242,846 + AMB_RS05890 0.60 -0.1
1,242,847 - AMB_RS05890 0.60 -0.3
1,242,945 + AMB_RS05890 0.68 -3.1
1,242,946 - AMB_RS05890 0.68 -0.2
1,242,946 - AMB_RS05890 0.68 -1.0
1,242,946 - AMB_RS05890 0.68 -2.8
1,242,972 + AMB_RS05890 0.70 -1.9
1,242,972 + AMB_RS05890 0.70 -1.0
1,242,973 - AMB_RS05890 0.70 -1.0
1,242,973 - AMB_RS05890 0.70 -0.2
1,242,973 - AMB_RS05890 0.70 -0.4
1,243,233 + -1.0
1,243,268 - -0.7
1,243,268 - +0.3
1,243,268 - -0.4
1,243,268 - -1.8
1,243,371 - AMB_RS05895 0.17 +0.7
1,243,371 - AMB_RS05895 0.17 -2.4
1,243,457 + AMB_RS05895 0.58 -0.0
1,243,458 - AMB_RS05895 0.58 -0.8
1,243,476 - AMB_RS05895 0.67 -1.5
1,243,476 - AMB_RS05895 0.67 -0.1
1,243,545 + +0.2
1,243,546 - -0.2
1,243,546 - -0.0
1,243,548 + -2.3
1,243,548 + +0.4
1,243,548 + -0.7
1,243,549 - -1.2
1,243,549 - -2.3
1,243,549 - +0.9
1,243,549 - -1.6
1,243,572 + -1.0
1,243,573 - +0.0
1,243,573 - -1.2
1,243,977 + AMB_RS05900 0.82 -1.0
1,243,978 - AMB_RS05900 0.82 -0.4
1,243,978 - AMB_RS05900 0.82 +1.1
1,244,049 + -1.8
1,244,049 + +0.5
1,244,050 - -1.6
1,244,092 + -0.7
1,244,093 - +0.4
1,244,093 - -3.7

Or see this region's nucleotide sequence