Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04820

Experiment: 150_an_nonmag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_1
1,001,866	-		AMB_RS04815	0.15	-0.5
1,001,866	-		AMB_RS04815	0.15	+0.2
1,001,866	-		AMB_RS04815	0.15	+0.6
1,002,156	+		AMB_RS04815	0.40	-0.4
1,002,195	+		AMB_RS04815	0.43	-3.9
1,002,195	+		AMB_RS04815	0.43	-1.5
1,002,196	-		AMB_RS04815	0.43	+0.6
1,002,196	-		AMB_RS04815	0.43	-0.8
1,002,196	-		AMB_RS04815	0.43	+0.3
1,002,196	-		AMB_RS04815	0.43	-1.0
1,002,196	-		AMB_RS04815	0.43	-0.2
1,002,330	+		AMB_RS04815	0.55	-0.5
1,002,331	-		AMB_RS04815	0.55	+0.0
1,002,381	+		AMB_RS04815	0.59	-0.6
1,002,381	+		AMB_RS04815	0.59	-1.6
1,002,381	+		AMB_RS04815	0.59	+1.6
1,002,382	-		AMB_RS04815	0.59	-1.2
1,002,382	-		AMB_RS04815	0.59	+0.0
1,002,382	-		AMB_RS04815	0.59	-0.4
1,002,382	-		AMB_RS04815	0.59	+0.6
1,002,382	-		AMB_RS04815	0.59	-2.9
1,002,489	+		AMB_RS04815	0.68	-1.0
1,002,489	+		AMB_RS04815	0.68	-1.9
1,002,489	+		AMB_RS04815	0.68	-0.2
1,002,490	-		AMB_RS04815	0.68	-1.0
1,002,490	-		AMB_RS04815	0.68	+0.2
1,002,490	-		AMB_RS04815	0.68	-0.7
1,002,490	-		AMB_RS04815	0.68	+0.6
1,002,490	-		AMB_RS04815	0.68	-0.9
1,002,490	-		AMB_RS04815	0.68	-1.9
1,002,577	-		AMB_RS04815	0.76	+1.2
1,002,577	-		AMB_RS04815	0.76	+0.2
1,002,649	-		AMB_RS04815	0.82	-0.7
1,002,652	-		AMB_RS04815	0.82	-0.2
1,002,652	-		AMB_RS04815	0.82	-0.5
1,002,702	-		AMB_RS04815	0.86	-0.5
1,002,868	+				-0.6
1,002,868	+				+0.9
1,003,073	+		AMB_RS04820	0.15	-3.4
1,003,073	+		AMB_RS04820	0.15	+0.1
1,003,073	+		AMB_RS04820	0.15	+0.3
1,003,073	+		AMB_RS04820	0.15	-0.8
1,003,074	-		AMB_RS04820	0.15	-0.7
1,003,074	-		AMB_RS04820	0.15	-2.1
1,003,091	+		AMB_RS04820	0.16	-0.4
1,003,091	+		AMB_RS04820	0.16	-4.1
1,003,092	-		AMB_RS04820	0.16	-0.1
1,003,095	+		AMB_RS04820	0.16	-2.3
1,003,095	+		AMB_RS04820	0.16	-1.9
1,003,096	-		AMB_RS04820	0.16	+0.3
1,003,205	+		AMB_RS04820	0.24	+0.0
1,003,205	+		AMB_RS04820	0.24	-0.5
1,003,219	+		AMB_RS04820	0.25	-1.4
1,003,260	+		AMB_RS04820	0.28	-1.2
1,003,260	+		AMB_RS04820	0.28	+0.2
1,003,261	-		AMB_RS04820	0.28	+0.8
1,003,499	+		AMB_RS04820	0.44	-1.2
1,003,499	+		AMB_RS04820	0.44	-1.5
1,003,500	-		AMB_RS04820	0.45	+0.0
1,003,515	+		AMB_RS04820	0.46	+0.7
1,003,515	+		AMB_RS04820	0.46	-0.4
1,003,515	+		AMB_RS04820	0.46	-1.6
1,003,515	+		AMB_RS04820	0.46	-0.7
1,003,515	+		AMB_RS04820	0.46	-2.2
1,003,515	+		AMB_RS04820	0.46	+0.0
1,003,515	+		AMB_RS04820	0.46	-0.7
1,003,515	+		AMB_RS04820	0.46	-2.2
1,003,516	-		AMB_RS04820	0.46	-1.0
1,003,516	-		AMB_RS04820	0.46	-2.4
1,003,516	-		AMB_RS04820	0.46	-0.5
1,003,516	-		AMB_RS04820	0.46	-1.9
1,003,516	-		AMB_RS04820	0.46	-1.0
1,003,516	-		AMB_RS04820	0.46	-1.4
1,003,516	-		AMB_RS04820	0.46	-0.7
1,003,534	+		AMB_RS04820	0.47	-3.1
1,003,534	+		AMB_RS04820	0.47	-0.5
1,003,534	+		AMB_RS04820	0.47	-1.0
1,003,534	+		AMB_RS04820	0.47	-0.1
1,003,534	+		AMB_RS04820	0.47	+1.6
1,003,534	+		AMB_RS04820	0.47	-0.2
1,003,535	-		AMB_RS04820	0.47	+0.6
1,003,767	+		AMB_RS04820	0.63	+0.3
1,003,767	+		AMB_RS04820	0.63	-1.9
1,003,768	-		AMB_RS04820	0.63	-0.4
1,003,768	-		AMB_RS04820	0.63	-2.3
1,004,016	-		AMB_RS04820	0.80	+0.3
1,004,021	+		AMB_RS04820	0.81	-0.7
1,004,021	+		AMB_RS04820	0.81	-0.4
1,004,021	+		AMB_RS04820	0.81	-2.2
1,004,021	+		AMB_RS04820	0.81	-2.0
1,004,021	+		AMB_RS04820	0.81	-0.2
1,004,021	+		AMB_RS04820	0.81	-1.0
1,004,021	+		AMB_RS04820	0.81	-0.4
1,004,021	+		AMB_RS04820	0.81	-1.0
1,004,021	+		AMB_RS04820	0.81	-1.9
1,004,022	-		AMB_RS04820	0.81	-0.5
1,004,022	-		AMB_RS04820	0.81	-0.6
1,004,022	-		AMB_RS04820	0.81	-1.0
1,004,022	-		AMB_RS04820	0.81	-2.2
1,004,087	+		AMB_RS04820	0.85	-0.7
1,004,087	+		AMB_RS04820	0.85	-0.2
1,004,087	+		AMB_RS04820	0.85	-1.9
1,004,087	+		AMB_RS04820	0.85	-0.5
1,004,087	+		AMB_RS04820	0.85	+0.7
1,004,088	-		AMB_RS04820	0.85	-1.6
1,004,088	-		AMB_RS04820	0.85	+0.9
1,004,090	-		AMB_RS04820	0.86	+0.3
1,004,295	-				-2.3
1,004,340	+				-0.4
1,004,340	+				-2.5
1,004,340	+				-0.2
1,004,340	+				+0.1
1,004,341	-				-0.8
1,004,341	-				-0.7
1,004,360	+				+1.1
1,004,478	-		AMB_RS04825	0.24	-1.1
1,004,478	-		AMB_RS04825	0.24	-1.1
1,004,512	+		AMB_RS04825	0.31	+0.4
1,004,512	+		AMB_RS04825	0.31	-0.4
1,004,512	+		AMB_RS04825	0.31	+3.8
1,004,512	+		AMB_RS04825	0.31	-0.7
1,004,513	-		AMB_RS04825	0.31	-1.2
1,004,513	-		AMB_RS04825	0.31	-0.8
1,004,513	-		AMB_RS04825	0.31	-1.7
1,004,513	-		AMB_RS04825	0.31	+0.1
1,004,513	-		AMB_RS04825	0.31	-0.8
1,004,609	+		AMB_RS04825	0.48	+1.6
1,004,609	+		AMB_RS04825	0.48	-2.3
1,004,609	+		AMB_RS04825	0.48	+0.1
1,004,609	+		AMB_RS04825	0.48	-4.8
1,004,609	+		AMB_RS04825	0.48	-0.0
1,004,609	+		AMB_RS04825	0.48	-2.0
1,004,610	-		AMB_RS04825	0.49	+0.5
1,004,610	-		AMB_RS04825	0.49	-1.4
1,004,624	+		AMB_RS04825	0.51	-0.4
1,004,624	+		AMB_RS04825	0.51	-0.1
1,004,624	+		AMB_RS04825	0.51	-0.4
1,004,624	+		AMB_RS04825	0.51	+0.6
1,004,624	+		AMB_RS04825	0.51	-1.4
1,004,624	+		AMB_RS04825	0.51	+0.6
1,004,624	+		AMB_RS04825	0.51	+0.3
1,004,624	+		AMB_RS04825	0.51	-2.7
1,004,624	+		AMB_RS04825	0.51	-0.2
1,004,624	+		AMB_RS04825	0.51	-0.8
1,004,624	+		AMB_RS04825	0.51	-0.3
1,004,625	-		AMB_RS04825	0.51	-0.1
1,004,625	-		AMB_RS04825	0.51	-0.3
1,004,625	-		AMB_RS04825	0.51	+0.0
1,004,625	-		AMB_RS04825	0.51	-2.9
1,004,625	-		AMB_RS04825	0.51	-0.7
1,004,625	-		AMB_RS04825	0.51	-1.0
1,004,625	-		AMB_RS04825	0.51	+0.7
1,004,625	-		AMB_RS04825	0.51	-2.8
1,004,625	-		AMB_RS04825	0.51	-0.9
1,004,710	+		AMB_RS04825	0.67	-1.9
1,004,711	-		AMB_RS04825	0.67	-0.0
1,004,711	-		AMB_RS04825	0.67	+0.1
1,004,738	+		AMB_RS04825	0.72	+0.1
1,004,738	+		AMB_RS04825	0.72	-0.2
1,004,738	+		AMB_RS04825	0.72	-0.4
1,004,738	+		AMB_RS04825	0.72	+1.0
1,004,738	+		AMB_RS04825	0.72	-0.3
1,004,738	+		AMB_RS04825	0.72	-0.1
1,004,738	+		AMB_RS04825	0.72	-1.1
1,004,739	-		AMB_RS04825	0.72	-0.8
1,004,739	-		AMB_RS04825	0.72	-2.3
1,004,739	-		AMB_RS04825	0.72	-0.0
1,004,739	-		AMB_RS04825	0.72	-1.0
1,004,739	-		AMB_RS04825	0.72	-0.4
1,004,739	-		AMB_RS04825	0.72	-0.4
1,004,739	-		AMB_RS04825	0.72	-2.3
1,004,739	-		AMB_RS04825	0.72	-3.0
1,004,739	-		AMB_RS04825	0.72	-1.6
1,004,739	-		AMB_RS04825	0.72	-1.0
1,004,855	+				+1.6
1,004,855	+				-1.0
1,004,856	-				-0.0
1,004,856	-				+1.3
1,004,964	+				-1.0
1,004,965	-				+4.1
1,004,965	-				-0.0
1,004,967	+				-0.4
1,004,967	+				+0.2
1,004,968	-				-1.0
1,004,968	-				-0.7
1,004,996	+				+0.3
1,004,996	+				-0.7
1,005,016	+				-0.7
1,005,017	-				-2.4
1,005,017	-				-1.6
1,005,017	-				-5.3
1,005,095	+		AMB_RS04830	0.24	-0.4
1,005,096	-		AMB_RS04830	0.24	-1.6
1,005,096	-		AMB_RS04830	0.24	-1.0
1,005,096	-		AMB_RS04830	0.24	-0.7
1,005,154	+		AMB_RS04830	0.35	-1.3
1,005,154	+		AMB_RS04830	0.35	-0.3
1,005,155	-		AMB_RS04830	0.35	-0.1
1,005,155	-		AMB_RS04830	0.35	-1.2
1,005,158	+		AMB_RS04830	0.36	+0.4
1,005,158	+		AMB_RS04830	0.36	-0.0
1,005,158	+		AMB_RS04830	0.36	-0.0
1,005,158	+		AMB_RS04830	0.36	-1.2
1,005,158	+		AMB_RS04830	0.36	-1.1
1,005,158	+		AMB_RS04830	0.36	-2.0
1,005,158	+		AMB_RS04830	0.36	-1.4
1,005,158	+		AMB_RS04830	0.36	-2.4
1,005,159	-		AMB_RS04830	0.36	-0.5
1,005,159	-		AMB_RS04830	0.36	-0.7
1,005,159	-		AMB_RS04830	0.36	-1.6
1,005,159	-		AMB_RS04830	0.36	-1.1
1,005,228	-		AMB_RS04830	0.49	-5.2
1,005,228	-		AMB_RS04830	0.49	-1.0
1,005,228	-		AMB_RS04830	0.49	+3.0
1,005,228	-		AMB_RS04830	0.49	-3.9
1,005,228	-		AMB_RS04830	0.49	-3.1
1,005,242	+		AMB_RS04830	0.52	-0.5
1,005,242	+		AMB_RS04830	0.52	-0.5
1,005,242	+		AMB_RS04830	0.52	-1.7
1,005,242	+		AMB_RS04830	0.52	-1.7
1,005,242	+		AMB_RS04830	0.52	+0.6
1,005,243	-		AMB_RS04830	0.52	-0.7
1,005,243	-		AMB_RS04830	0.52	-1.0
1,005,243	-		AMB_RS04830	0.52	-2.0