Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04565

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04560 and AMB_RS04565 are separated by 104 nucleotidesAMB_RS04565 and AMB_RS04570 overlap by 4 nucleotidesAMB_RS04570 and AMB_RS04575 are separated by 105 nucleotides AMB_RS04560: AMB_RS04560 - C4-dicarboxylate ABC transporter, at 954,770 to 955,783 _RS04560 AMB_RS04565: AMB_RS04565 - PAS domain-containing sensor histidine kinase, at 955,888 to 957,855 _RS04565 AMB_RS04570: AMB_RS04570 - DNA-binding response regulator, at 957,852 to 958,454 _RS04570 AMB_RS04575: AMB_RS04575 - DNA-binding response regulator, at 958,560 to 959,210 _RS04575 Position (kb) 955 956 957 958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 955.080 kb on + strand, within AMB_RS04560at 955.081 kb on - strand, within AMB_RS04560at 955.081 kb on - strand, within AMB_RS04560at 955.112 kb on + strand, within AMB_RS04560at 955.112 kb on + strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.191 kb on + strand, within AMB_RS04560at 955.191 kb on + strand, within AMB_RS04560at 955.192 kb on - strand, within AMB_RS04560at 955.350 kb on + strand, within AMB_RS04560at 955.351 kb on - strand, within AMB_RS04560at 955.351 kb on - strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.587 kb on + strand, within AMB_RS04560at 955.587 kb on + strand, within AMB_RS04560at 955.642 kb on - strand, within AMB_RS04560at 955.786 kb on + strandat 955.786 kb on + strandat 955.787 kb on - strandat 955.787 kb on - strandat 955.787 kb on - strandat 955.817 kb on + strandat 955.817 kb on + strandat 955.827 kb on + strandat 955.827 kb on + strandat 955.827 kb on + strandat 955.828 kb on - strandat 955.828 kb on - strandat 955.828 kb on - strandat 955.830 kb on + strandat 955.830 kb on + strandat 955.830 kb on + strandat 955.831 kb on - strandat 955.831 kb on - strandat 955.832 kb on + strandat 955.833 kb on - strandat 955.833 kb on - strandat 955.833 kb on - strandat 955.833 kb on - strandat 955.887 kb on + strandat 955.887 kb on + strandat 955.887 kb on + strandat 955.888 kb on - strandat 956.062 kb on + strandat 956.063 kb on - strandat 956.063 kb on - strandat 956.063 kb on - strandat 956.323 kb on + strand, within AMB_RS04565at 956.324 kb on - strand, within AMB_RS04565at 956.335 kb on + strand, within AMB_RS04565at 956.336 kb on - strand, within AMB_RS04565at 956.336 kb on - strand, within AMB_RS04565at 956.336 kb on - strand, within AMB_RS04565at 956.376 kb on - strand, within AMB_RS04565at 956.557 kb on + strand, within AMB_RS04565at 956.557 kb on + strand, within AMB_RS04565at 956.557 kb on + strand, within AMB_RS04565at 956.558 kb on - strand, within AMB_RS04565at 956.558 kb on - strand, within AMB_RS04565at 956.611 kb on + strand, within AMB_RS04565at 956.612 kb on - strand, within AMB_RS04565at 956.827 kb on + strand, within AMB_RS04565at 956.827 kb on + strand, within AMB_RS04565at 956.827 kb on + strand, within AMB_RS04565at 956.827 kb on + strand, within AMB_RS04565at 956.827 kb on + strand, within AMB_RS04565at 956.827 kb on + strand, within AMB_RS04565at 956.828 kb on - strand, within AMB_RS04565at 956.828 kb on - strand, within AMB_RS04565at 956.828 kb on - strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.902 kb on + strand, within AMB_RS04565at 956.928 kb on + strand, within AMB_RS04565at 956.928 kb on + strand, within AMB_RS04565at 956.928 kb on + strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.929 kb on - strand, within AMB_RS04565at 956.932 kb on + strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 956.933 kb on - strand, within AMB_RS04565at 957.032 kb on - strand, within AMB_RS04565at 957.153 kb on + strand, within AMB_RS04565at 957.154 kb on - strand, within AMB_RS04565at 957.235 kb on + strand, within AMB_RS04565at 957.236 kb on - strand, within AMB_RS04565at 957.236 kb on - strand, within AMB_RS04565at 957.750 kb on + strandat 957.750 kb on + strandat 957.750 kb on + strandat 957.751 kb on - strandat 957.762 kb on + strandat 957.763 kb on - strandat 957.865 kb on + strandat 957.865 kb on + strandat 957.865 kb on + strandat 957.866 kb on - strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.870 kb on + strandat 957.871 kb on - strandat 957.871 kb on - strandat 957.871 kb on - strandat 957.871 kb on - strandat 958.470 kb on + strandat 958.471 kb on - strandat 958.541 kb on + strandat 958.581 kb on + strandat 958.581 kb on + strandat 958.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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955,080 + AMB_RS04560 0.31 -2.1
955,081 - AMB_RS04560 0.31 -2.2
955,081 - AMB_RS04560 0.31 -1.2
955,112 + AMB_RS04560 0.34 -0.8
955,112 + AMB_RS04560 0.34 -3.6
955,113 - AMB_RS04560 0.34 -0.2
955,113 - AMB_RS04560 0.34 -1.6
955,113 - AMB_RS04560 0.34 -1.6
955,134 + AMB_RS04560 0.36 -0.8
955,134 + AMB_RS04560 0.36 +1.1
955,134 + AMB_RS04560 0.36 +1.6
955,134 + AMB_RS04560 0.36 -0.4
955,134 + AMB_RS04560 0.36 -1.2
955,134 + AMB_RS04560 0.36 +0.1
955,135 - AMB_RS04560 0.36 +0.7
955,135 - AMB_RS04560 0.36 -0.8
955,135 - AMB_RS04560 0.36 -4.0
955,135 - AMB_RS04560 0.36 -1.1
955,135 - AMB_RS04560 0.36 -3.0
955,135 - AMB_RS04560 0.36 -0.4
955,135 - AMB_RS04560 0.36 -0.5
955,135 - AMB_RS04560 0.36 -2.3
955,191 + AMB_RS04560 0.42 -2.2
955,191 + AMB_RS04560 0.42 -0.0
955,192 - AMB_RS04560 0.42 -1.1
955,350 + AMB_RS04560 0.57 -1.2
955,351 - AMB_RS04560 0.57 -2.3
955,351 - AMB_RS04560 0.57 -1.9
955,452 + AMB_RS04560 0.67 -1.0
955,452 + AMB_RS04560 0.67 -0.6
955,452 + AMB_RS04560 0.67 -0.5
955,452 + AMB_RS04560 0.67 -0.8
955,452 + AMB_RS04560 0.67 -1.6
955,453 - AMB_RS04560 0.67 -0.8
955,453 - AMB_RS04560 0.67 -0.4
955,453 - AMB_RS04560 0.67 -0.6
955,453 - AMB_RS04560 0.67 -1.0
955,453 - AMB_RS04560 0.67 -0.7
955,453 - AMB_RS04560 0.67 -1.0
955,453 - AMB_RS04560 0.67 -0.0
955,453 - AMB_RS04560 0.67 -0.1
955,453 - AMB_RS04560 0.67 -0.6
955,453 - AMB_RS04560 0.67 -1.2
955,569 + AMB_RS04560 0.79 -2.9
955,569 + AMB_RS04560 0.79 -0.8
955,569 + AMB_RS04560 0.79 -2.0
955,570 - AMB_RS04560 0.79 -2.4
955,570 - AMB_RS04560 0.79 -0.0
955,570 - AMB_RS04560 0.79 -1.1
955,570 - AMB_RS04560 0.79 -0.3
955,587 + AMB_RS04560 0.81 +1.6
955,587 + AMB_RS04560 0.81 -2.1
955,642 - AMB_RS04560 0.86 -1.0
955,786 + +1.6
955,786 + -0.9
955,787 - -1.6
955,787 - -2.5
955,787 - -0.8
955,817 + -0.8
955,817 + +1.6
955,827 + -1.6
955,827 + -0.8
955,827 + -3.0
955,828 - +0.6
955,828 - +0.2
955,828 - -1.8
955,830 + +0.6
955,830 + -0.0
955,830 + +1.6
955,831 - -1.4
955,831 - -0.9
955,832 + -1.4
955,833 - +0.9
955,833 - +0.6
955,833 - -0.0
955,833 - +0.5
955,887 + -1.0
955,887 + +0.5
955,887 + +0.4
955,888 - +0.5
956,062 + +0.1
956,063 - -0.0
956,063 - -3.0
956,063 - -0.4
956,323 + AMB_RS04565 0.22 +0.3
956,324 - AMB_RS04565 0.22 +0.2
956,335 + AMB_RS04565 0.23 -0.8
956,336 - AMB_RS04565 0.23 -0.1
956,336 - AMB_RS04565 0.23 -0.4
956,336 - AMB_RS04565 0.23 -0.1
956,376 - AMB_RS04565 0.25 -0.7
956,557 + AMB_RS04565 0.34 +1.4
956,557 + AMB_RS04565 0.34 -0.8
956,557 + AMB_RS04565 0.34 -0.1
956,558 - AMB_RS04565 0.34 -1.9
956,558 - AMB_RS04565 0.34 -1.3
956,611 + AMB_RS04565 0.37 +1.2
956,612 - AMB_RS04565 0.37 -2.2
956,827 + AMB_RS04565 0.48 -2.6
956,827 + AMB_RS04565 0.48 -1.2
956,827 + AMB_RS04565 0.48 -0.9
956,827 + AMB_RS04565 0.48 -0.8
956,827 + AMB_RS04565 0.48 -0.4
956,827 + AMB_RS04565 0.48 -2.4
956,828 - AMB_RS04565 0.48 +0.2
956,828 - AMB_RS04565 0.48 -0.8
956,828 - AMB_RS04565 0.48 -0.5
956,902 + AMB_RS04565 0.52 -0.4
956,902 + AMB_RS04565 0.52 +4.7
956,902 + AMB_RS04565 0.52 -0.1
956,902 + AMB_RS04565 0.52 -0.7
956,928 + AMB_RS04565 0.53 -1.0
956,928 + AMB_RS04565 0.53 -0.1
956,928 + AMB_RS04565 0.53 -2.3
956,929 - AMB_RS04565 0.53 -0.0
956,929 - AMB_RS04565 0.53 -0.0
956,929 - AMB_RS04565 0.53 -0.5
956,929 - AMB_RS04565 0.53 +0.3
956,929 - AMB_RS04565 0.53 -1.9
956,929 - AMB_RS04565 0.53 -2.3
956,929 - AMB_RS04565 0.53 -0.8
956,929 - AMB_RS04565 0.53 -1.4
956,929 - AMB_RS04565 0.53 -0.0
956,929 - AMB_RS04565 0.53 -0.4
956,929 - AMB_RS04565 0.53 -3.5
956,932 + AMB_RS04565 0.53 -1.8
956,933 - AMB_RS04565 0.53 -1.0
956,933 - AMB_RS04565 0.53 -0.3
956,933 - AMB_RS04565 0.53 -2.0
956,933 - AMB_RS04565 0.53 +0.3
956,933 - AMB_RS04565 0.53 +0.0
957,032 - AMB_RS04565 0.58 -1.2
957,153 + AMB_RS04565 0.64 -1.4
957,154 - AMB_RS04565 0.64 -3.0
957,235 + AMB_RS04565 0.68 -2.8
957,236 - AMB_RS04565 0.68 -2.1
957,236 - AMB_RS04565 0.68 -0.1
957,750 + -0.4
957,750 + -1.0
957,750 + -1.6
957,751 - +0.6
957,762 + -1.6
957,763 - -0.8
957,865 + -1.4
957,865 + -0.2
957,865 + -2.9
957,866 - -0.0
957,870 + -2.9
957,870 + -1.8
957,870 + -0.3
957,870 + -0.5
957,870 + -1.9
957,871 - -3.0
957,871 - +0.1
957,871 - -0.6
957,871 - -0.4
958,470 + -0.7
958,471 - -0.2
958,541 + +1.6
958,581 + -2.0
958,581 + -0.9
958,582 - -2.2

Or see this region's nucleotide sequence