Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04560

Experiment: 150_an_nonmag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04550 and AMB_RS04555 overlap by 4 nucleotidesAMB_RS04555 and AMB_RS04560 are separated by 87 nucleotidesAMB_RS04560 and AMB_RS04565 are separated by 104 nucleotides AMB_RS04550: AMB_RS04550 - C4-dicarboxylate ABC transporter permease, at 952,704 to 953,987 _RS04550 AMB_RS04555: AMB_RS04555 - TRAP transporter small permease, at 953,984 to 954,682 _RS04555 AMB_RS04560: AMB_RS04560 - C4-dicarboxylate ABC transporter, at 954,770 to 955,783 _RS04560 AMB_RS04565: AMB_RS04565 - PAS domain-containing sensor histidine kinase, at 955,888 to 957,855 _RS04565 Position (kb) 954 955 956Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 954.225 kb on + strand, within AMB_RS04555at 954.226 kb on - strand, within AMB_RS04555at 954.273 kb on + strand, within AMB_RS04555at 954.315 kb on + strand, within AMB_RS04555at 954.316 kb on - strand, within AMB_RS04555at 954.398 kb on + strand, within AMB_RS04555at 954.399 kb on - strand, within AMB_RS04555at 954.474 kb on - strand, within AMB_RS04555at 954.474 kb on - strand, within AMB_RS04555at 954.480 kb on + strand, within AMB_RS04555at 954.481 kb on - strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.567 kb on + strand, within AMB_RS04555at 954.568 kb on - strand, within AMB_RS04555at 954.591 kb on + strand, within AMB_RS04555at 954.592 kb on - strand, within AMB_RS04555at 954.592 kb on - strand, within AMB_RS04555at 954.804 kb on + strandat 954.804 kb on + strandat 954.805 kb on - strandat 955.080 kb on + strand, within AMB_RS04560at 955.081 kb on - strand, within AMB_RS04560at 955.081 kb on - strand, within AMB_RS04560at 955.112 kb on + strand, within AMB_RS04560at 955.112 kb on + strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.113 kb on - strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.134 kb on + strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.135 kb on - strand, within AMB_RS04560at 955.191 kb on + strand, within AMB_RS04560at 955.191 kb on + strand, within AMB_RS04560at 955.192 kb on - strand, within AMB_RS04560at 955.350 kb on + strand, within AMB_RS04560at 955.351 kb on - strand, within AMB_RS04560at 955.351 kb on - strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.452 kb on + strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.453 kb on - strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.569 kb on + strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.570 kb on - strand, within AMB_RS04560at 955.587 kb on + strand, within AMB_RS04560at 955.587 kb on + strand, within AMB_RS04560at 955.642 kb on - strand, within AMB_RS04560at 955.786 kb on + strandat 955.786 kb on + strandat 955.787 kb on - strandat 955.787 kb on - strandat 955.787 kb on - strandat 955.817 kb on + strandat 955.817 kb on + strandat 955.827 kb on + strandat 955.827 kb on + strandat 955.827 kb on + strandat 955.828 kb on - strandat 955.828 kb on - strandat 955.828 kb on - strandat 955.830 kb on + strandat 955.830 kb on + strandat 955.830 kb on + strandat 955.831 kb on - strandat 955.831 kb on - strandat 955.832 kb on + strandat 955.833 kb on - strandat 955.833 kb on - strandat 955.833 kb on - strandat 955.833 kb on - strandat 955.887 kb on + strandat 955.887 kb on + strandat 955.887 kb on + strandat 955.888 kb on - strandat 956.062 kb on + strandat 956.063 kb on - strandat 956.063 kb on - strandat 956.063 kb on - strandat 956.323 kb on + strand, within AMB_RS04565at 956.324 kb on - strand, within AMB_RS04565at 956.335 kb on + strand, within AMB_RS04565at 956.336 kb on - strand, within AMB_RS04565at 956.336 kb on - strand, within AMB_RS04565at 956.336 kb on - strand, within AMB_RS04565at 956.376 kb on - strand, within AMB_RS04565at 956.557 kb on + strand, within AMB_RS04565at 956.557 kb on + strand, within AMB_RS04565at 956.557 kb on + strand, within AMB_RS04565at 956.558 kb on - strand, within AMB_RS04565at 956.558 kb on - strand, within AMB_RS04565at 956.611 kb on + strand, within AMB_RS04565at 956.612 kb on - strand, within AMB_RS04565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
remove
954,225 + AMB_RS04555 0.34 -1.9
954,226 - AMB_RS04555 0.35 +0.6
954,273 + AMB_RS04555 0.41 -0.1
954,315 + AMB_RS04555 0.47 -0.8
954,316 - AMB_RS04555 0.47 -2.0
954,398 + AMB_RS04555 0.59 -0.0
954,399 - AMB_RS04555 0.59 -0.4
954,474 - AMB_RS04555 0.70 -0.8
954,474 - AMB_RS04555 0.70 -1.4
954,480 + AMB_RS04555 0.71 -0.1
954,481 - AMB_RS04555 0.71 -2.1
954,567 + AMB_RS04555 0.83 -1.4
954,567 + AMB_RS04555 0.83 -1.6
954,567 + AMB_RS04555 0.83 -0.0
954,568 - AMB_RS04555 0.84 -1.2
954,591 + AMB_RS04555 0.87 -3.2
954,592 - AMB_RS04555 0.87 -0.4
954,592 - AMB_RS04555 0.87 -2.1
954,804 + +1.6
954,804 + -0.0
954,805 - -0.8
955,080 + AMB_RS04560 0.31 -2.1
955,081 - AMB_RS04560 0.31 -2.2
955,081 - AMB_RS04560 0.31 -1.2
955,112 + AMB_RS04560 0.34 -0.8
955,112 + AMB_RS04560 0.34 -3.6
955,113 - AMB_RS04560 0.34 -0.2
955,113 - AMB_RS04560 0.34 -1.6
955,113 - AMB_RS04560 0.34 -1.6
955,134 + AMB_RS04560 0.36 -0.8
955,134 + AMB_RS04560 0.36 +1.1
955,134 + AMB_RS04560 0.36 +1.6
955,134 + AMB_RS04560 0.36 -0.4
955,134 + AMB_RS04560 0.36 -1.2
955,134 + AMB_RS04560 0.36 +0.1
955,135 - AMB_RS04560 0.36 +0.7
955,135 - AMB_RS04560 0.36 -0.8
955,135 - AMB_RS04560 0.36 -4.0
955,135 - AMB_RS04560 0.36 -1.1
955,135 - AMB_RS04560 0.36 -3.0
955,135 - AMB_RS04560 0.36 -0.4
955,135 - AMB_RS04560 0.36 -0.5
955,135 - AMB_RS04560 0.36 -2.3
955,191 + AMB_RS04560 0.42 -2.2
955,191 + AMB_RS04560 0.42 -0.0
955,192 - AMB_RS04560 0.42 -1.1
955,350 + AMB_RS04560 0.57 -1.2
955,351 - AMB_RS04560 0.57 -2.3
955,351 - AMB_RS04560 0.57 -1.9
955,452 + AMB_RS04560 0.67 -1.0
955,452 + AMB_RS04560 0.67 -0.6
955,452 + AMB_RS04560 0.67 -0.5
955,452 + AMB_RS04560 0.67 -0.8
955,452 + AMB_RS04560 0.67 -1.6
955,453 - AMB_RS04560 0.67 -0.8
955,453 - AMB_RS04560 0.67 -0.4
955,453 - AMB_RS04560 0.67 -0.6
955,453 - AMB_RS04560 0.67 -1.0
955,453 - AMB_RS04560 0.67 -0.7
955,453 - AMB_RS04560 0.67 -1.0
955,453 - AMB_RS04560 0.67 -0.0
955,453 - AMB_RS04560 0.67 -0.1
955,453 - AMB_RS04560 0.67 -0.6
955,453 - AMB_RS04560 0.67 -1.2
955,569 + AMB_RS04560 0.79 -2.9
955,569 + AMB_RS04560 0.79 -0.8
955,569 + AMB_RS04560 0.79 -2.0
955,570 - AMB_RS04560 0.79 -2.4
955,570 - AMB_RS04560 0.79 -0.0
955,570 - AMB_RS04560 0.79 -1.1
955,570 - AMB_RS04560 0.79 -0.3
955,587 + AMB_RS04560 0.81 +1.6
955,587 + AMB_RS04560 0.81 -2.1
955,642 - AMB_RS04560 0.86 -1.0
955,786 + +1.6
955,786 + -0.9
955,787 - -1.6
955,787 - -2.5
955,787 - -0.8
955,817 + -0.8
955,817 + +1.6
955,827 + -1.6
955,827 + -0.8
955,827 + -3.0
955,828 - +0.6
955,828 - +0.2
955,828 - -1.8
955,830 + +0.6
955,830 + -0.0
955,830 + +1.6
955,831 - -1.4
955,831 - -0.9
955,832 + -1.4
955,833 - +0.9
955,833 - +0.6
955,833 - -0.0
955,833 - +0.5
955,887 + -1.0
955,887 + +0.5
955,887 + +0.4
955,888 - +0.5
956,062 + +0.1
956,063 - -0.0
956,063 - -3.0
956,063 - -0.4
956,323 + AMB_RS04565 0.22 +0.3
956,324 - AMB_RS04565 0.22 +0.2
956,335 + AMB_RS04565 0.23 -0.8
956,336 - AMB_RS04565 0.23 -0.1
956,336 - AMB_RS04565 0.23 -0.4
956,336 - AMB_RS04565 0.23 -0.1
956,376 - AMB_RS04565 0.25 -0.7
956,557 + AMB_RS04565 0.34 +1.4
956,557 + AMB_RS04565 0.34 -0.8
956,557 + AMB_RS04565 0.34 -0.1
956,558 - AMB_RS04565 0.34 -1.9
956,558 - AMB_RS04565 0.34 -1.3
956,611 + AMB_RS04565 0.37 +1.2
956,612 - AMB_RS04565 0.37 -2.2

Or see this region's nucleotide sequence