Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04385 and AMB_RS04390 are separated by 31 nucleotides AMB_RS04390 and AMB_RS04395 are separated by 200 nucleotides AMB_RS04395 and AMB_RS04400 are separated by 82 nucleotides AMB_RS04400 and AMB_RS04405 are separated by 53 nucleotides
AMB_RS04385: AMB_RS04385 - elongation factor 3, at 919,966 to 921,780
_RS04385
AMB_RS04390: AMB_RS04390 - hypothetical protein, at 921,812 to 922,288
_RS04390
AMB_RS04395: AMB_RS04395 - hypothetical protein, at 922,489 to 922,833
_RS04395
AMB_RS04400: AMB_RS04400 - hypothetical protein, at 922,916 to 923,488
_RS04400
AMB_RS04405: AMB_RS04405 - potassium transporter Kup, at 923,542 to 925,464
_RS04405
Position (kb) 922
923 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 921.518 kb on + strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.518 kb on + strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.519 kb on - strand, within AMB_RS04385 at 921.792 kb on - strand at 921.792 kb on - strand at 921.792 kb on - strand at 921.879 kb on + strand, within AMB_RS04390 at 921.880 kb on - strand, within AMB_RS04390 at 921.880 kb on - strand, within AMB_RS04390 at 921.948 kb on + strand, within AMB_RS04390 at 921.948 kb on + strand, within AMB_RS04390 at 922.107 kb on + strand, within AMB_RS04390 at 922.107 kb on + strand, within AMB_RS04390 at 922.107 kb on + strand, within AMB_RS04390 at 922.108 kb on - strand, within AMB_RS04390 at 922.108 kb on - strand, within AMB_RS04390 at 922.108 kb on - strand, within AMB_RS04390 at 922.238 kb on + strand, within AMB_RS04390 at 922.401 kb on + strand at 922.402 kb on - strand at 922.495 kb on + strand at 922.495 kb on + strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.496 kb on - strand at 922.777 kb on + strand, within AMB_RS04395 at 922.777 kb on + strand, within AMB_RS04395 at 922.777 kb on + strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.828 kb on - strand at 922.828 kb on - strand at 922.828 kb on - strand at 922.856 kb on + strand at 922.867 kb on - strand at 922.878 kb on - strand at 923.111 kb on + strand, within AMB_RS04400 at 923.138 kb on + strand, within AMB_RS04400 at 923.138 kb on + strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.169 kb on - strand, within AMB_RS04400 at 923.169 kb on - strand, within AMB_RS04400 at 923.321 kb on + strand, within AMB_RS04400 at 923.322 kb on - strand, within AMB_RS04400 at 923.322 kb on - strand, within AMB_RS04400 at 923.537 kb on + strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.543 kb on + strand at 923.543 kb on + strand at 923.543 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 921,518 + AMB_RS04385 0.86 -2.0 921,518 + AMB_RS04385 0.86 -0.4 921,518 + AMB_RS04385 0.86 +0.5 921,518 + AMB_RS04385 0.86 -0.7 921,519 - AMB_RS04385 0.86 -0.4 921,519 - AMB_RS04385 0.86 -1.0 921,519 - AMB_RS04385 0.86 -3.8 921,519 - AMB_RS04385 0.86 -0.4 921,792 - -0.7 921,792 - -2.4 921,792 - -2.8 921,879 + AMB_RS04390 0.14 -1.1 921,880 - AMB_RS04390 0.14 -1.8 921,880 - AMB_RS04390 0.14 +0.6 921,948 + AMB_RS04390 0.29 -0.0 921,948 + AMB_RS04390 0.29 -0.3 922,107 + AMB_RS04390 0.62 -3.3 922,107 + AMB_RS04390 0.62 -0.6 922,107 + AMB_RS04390 0.62 -0.8 922,108 - AMB_RS04390 0.62 -3.2 922,108 - AMB_RS04390 0.62 -0.8 922,108 - AMB_RS04390 0.62 -0.4 922,238 + AMB_RS04390 0.89 -1.7 922,401 + -2.3 922,402 - -1.0 922,495 + -1.0 922,495 + -0.8 922,496 - -1.5 922,496 - -2.5 922,496 - -1.8 922,496 - -0.6 922,496 - -2.2 922,777 + AMB_RS04395 0.83 -0.4 922,777 + AMB_RS04395 0.83 -0.5 922,777 + AMB_RS04395 0.83 -0.0 922,778 - AMB_RS04395 0.84 -0.9 922,778 - AMB_RS04395 0.84 -0.4 922,778 - AMB_RS04395 0.84 -1.0 922,778 - AMB_RS04395 0.84 -0.4 922,828 - -0.8 922,828 - +0.1 922,828 - -1.0 922,856 + -0.7 922,867 - -1.9 922,878 - -0.9 923,111 + AMB_RS04400 0.34 -0.3 923,138 + AMB_RS04400 0.39 -1.4 923,138 + AMB_RS04400 0.39 -1.2 923,139 - AMB_RS04400 0.39 +0.0 923,139 - AMB_RS04400 0.39 -2.6 923,139 - AMB_RS04400 0.39 +0.6 923,139 - AMB_RS04400 0.39 +1.6 923,168 + AMB_RS04400 0.44 +0.8 923,168 + AMB_RS04400 0.44 -2.3 923,168 + AMB_RS04400 0.44 -2.1 923,168 + AMB_RS04400 0.44 +1.6 923,168 + AMB_RS04400 0.44 -2.1 923,169 - AMB_RS04400 0.44 -0.4 923,169 - AMB_RS04400 0.44 -1.7 923,321 + AMB_RS04400 0.71 -1.9 923,322 - AMB_RS04400 0.71 -3.0 923,322 - AMB_RS04400 0.71 +0.6 923,537 + -0.7 923,538 - -0.5 923,538 - -3.2 923,538 - -0.0 923,538 - -1.0 923,538 - -0.1 923,543 + -1.1 923,543 + -0.7 923,543 + +1.6
Or see this region's nucleotide sequence