Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04100 and AMB_RS04105 are separated by 3 nucleotides AMB_RS04105 and AMB_RS04110 are separated by 140 nucleotides AMB_RS04110 and AMB_RS04115 are separated by 190 nucleotides
AMB_RS04100: AMB_RS04100 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 860,107 to 860,913
_RS04100
AMB_RS04105: AMB_RS04105 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 860,917 to 861,306
_RS04105
AMB_RS04110: AMB_RS04110 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 861,447 to 862,310
_RS04110
AMB_RS04115: AMB_RS04115 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 862,501 to 863,958
_RS04115
Position (kb) 861
862
863 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 860.513 kb on + strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.514 kb on - strand, within AMB_RS04100 at 860.793 kb on - strand, within AMB_RS04100 at 860.981 kb on + strand, within AMB_RS04105 at 860.982 kb on - strand, within AMB_RS04105 at 860.982 kb on - strand, within AMB_RS04105 at 861.017 kb on + strand, within AMB_RS04105 at 861.018 kb on - strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.155 kb on + strand, within AMB_RS04105 at 861.156 kb on - strand, within AMB_RS04105 at 861.156 kb on - strand, within AMB_RS04105 at 861.156 kb on - strand, within AMB_RS04105 at 861.156 kb on - strand, within AMB_RS04105 at 861.156 kb on - strand, within AMB_RS04105 at 861.156 kb on - strand, within AMB_RS04105 at 861.284 kb on + strand at 861.285 kb on - strand at 861.285 kb on - strand at 861.502 kb on + strand at 861.502 kb on + strand at 861.532 kb on + strand at 861.532 kb on + strand at 861.532 kb on + strand at 861.533 kb on - strand at 861.533 kb on - strand at 861.533 kb on - strand at 861.533 kb on - strand at 861.533 kb on - strand at 861.607 kb on + strand, within AMB_RS04110 at 861.607 kb on + strand, within AMB_RS04110 at 861.685 kb on + strand, within AMB_RS04110 at 861.685 kb on + strand, within AMB_RS04110 at 861.685 kb on + strand, within AMB_RS04110 at 861.685 kb on + strand, within AMB_RS04110 at 861.686 kb on - strand, within AMB_RS04110 at 861.686 kb on - strand, within AMB_RS04110 at 861.686 kb on - strand, within AMB_RS04110 at 861.686 kb on - strand, within AMB_RS04110 at 861.892 kb on + strand, within AMB_RS04110 at 861.893 kb on - strand, within AMB_RS04110 at 861.934 kb on + strand, within AMB_RS04110 at 861.935 kb on - strand, within AMB_RS04110 at 862.042 kb on + strand, within AMB_RS04110 at 862.042 kb on + strand, within AMB_RS04110 at 862.042 kb on + strand, within AMB_RS04110 at 862.043 kb on - strand, within AMB_RS04110 at 862.043 kb on - strand, within AMB_RS04110 at 862.121 kb on - strand, within AMB_RS04110 at 862.121 kb on - strand, within AMB_RS04110 at 862.261 kb on + strand at 862.261 kb on + strand at 862.261 kb on + strand at 862.261 kb on + strand at 862.262 kb on - strand at 862.262 kb on - strand at 862.262 kb on - strand at 862.262 kb on - strand at 862.305 kb on - strand at 862.574 kb on + strand at 862.574 kb on + strand at 862.574 kb on + strand at 862.575 kb on - strand at 862.575 kb on - strand at 862.575 kb on - strand at 862.580 kb on + strand at 862.730 kb on + strand, within AMB_RS04115 at 862.730 kb on + strand, within AMB_RS04115 at 862.731 kb on - strand, within AMB_RS04115 at 862.731 kb on - strand, within AMB_RS04115 at 862.746 kb on - strand, within AMB_RS04115 at 862.746 kb on - strand, within AMB_RS04115 at 862.971 kb on + strand, within AMB_RS04115 at 862.973 kb on + strand, within AMB_RS04115 at 862.973 kb on + strand, within AMB_RS04115 at 862.973 kb on + strand, within AMB_RS04115 at 862.973 kb on + strand, within AMB_RS04115 at 862.973 kb on + strand, within AMB_RS04115 at 862.973 kb on + strand, within AMB_RS04115 at 862.974 kb on - strand, within AMB_RS04115 at 862.974 kb on - strand, within AMB_RS04115 at 862.974 kb on - strand, within AMB_RS04115 at 862.974 kb on - strand, within AMB_RS04115 at 862.974 kb on - strand, within AMB_RS04115 at 862.974 kb on - strand, within AMB_RS04115 at 863.096 kb on + strand, within AMB_RS04115 at 863.096 kb on + strand, within AMB_RS04115 at 863.097 kb on - strand, within AMB_RS04115 at 863.097 kb on - strand, within AMB_RS04115 at 863.097 kb on - strand, within AMB_RS04115 at 863.246 kb on + strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115 at 863.247 kb on - strand, within AMB_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 860,513 + AMB_RS04100 0.50 -0.3 860,514 - AMB_RS04100 0.50 +1.6 860,514 - AMB_RS04100 0.50 +0.1 860,514 - AMB_RS04100 0.50 -1.0 860,514 - AMB_RS04100 0.50 +0.1 860,514 - AMB_RS04100 0.50 -1.4 860,514 - AMB_RS04100 0.50 -0.8 860,514 - AMB_RS04100 0.50 -0.8 860,793 - AMB_RS04100 0.85 +1.6 860,981 + AMB_RS04105 0.16 -1.0 860,982 - AMB_RS04105 0.17 +0.1 860,982 - AMB_RS04105 0.17 -0.7 861,017 + AMB_RS04105 0.26 +0.6 861,018 - AMB_RS04105 0.26 -0.6 861,155 + AMB_RS04105 0.61 -1.0 861,155 + AMB_RS04105 0.61 -2.7 861,155 + AMB_RS04105 0.61 +0.7 861,155 + AMB_RS04105 0.61 -0.4 861,155 + AMB_RS04105 0.61 -1.8 861,155 + AMB_RS04105 0.61 -1.0 861,155 + AMB_RS04105 0.61 -3.0 861,155 + AMB_RS04105 0.61 -0.9 861,155 + AMB_RS04105 0.61 -3.6 861,155 + AMB_RS04105 0.61 -0.0 861,156 - AMB_RS04105 0.61 -1.4 861,156 - AMB_RS04105 0.61 +1.5 861,156 - AMB_RS04105 0.61 -1.9 861,156 - AMB_RS04105 0.61 -1.4 861,156 - AMB_RS04105 0.61 +0.0 861,156 - AMB_RS04105 0.61 -0.3 861,284 + -3.9 861,285 - +1.6 861,285 - -0.4 861,502 + -0.5 861,502 + -1.1 861,532 + -0.6 861,532 + -0.4 861,532 + -0.0 861,533 - +0.6 861,533 - -0.4 861,533 - -2.0 861,533 - +0.6 861,533 - +0.6 861,607 + AMB_RS04110 0.19 -0.1 861,607 + AMB_RS04110 0.19 -2.0 861,685 + AMB_RS04110 0.28 +1.6 861,685 + AMB_RS04110 0.28 -1.4 861,685 + AMB_RS04110 0.28 -0.8 861,685 + AMB_RS04110 0.28 -2.0 861,686 - AMB_RS04110 0.28 -0.4 861,686 - AMB_RS04110 0.28 +1.8 861,686 - AMB_RS04110 0.28 +1.0 861,686 - AMB_RS04110 0.28 -0.6 861,892 + AMB_RS04110 0.52 -4.0 861,893 - AMB_RS04110 0.52 -0.8 861,934 + AMB_RS04110 0.56 -0.6 861,935 - AMB_RS04110 0.56 -1.8 862,042 + AMB_RS04110 0.69 +0.9 862,042 + AMB_RS04110 0.69 -0.0 862,042 + AMB_RS04110 0.69 +0.7 862,043 - AMB_RS04110 0.69 +1.4 862,043 - AMB_RS04110 0.69 +0.9 862,121 - AMB_RS04110 0.78 -1.8 862,121 - AMB_RS04110 0.78 -0.0 862,261 + -2.1 862,261 + -0.9 862,261 + -0.8 862,261 + +1.6 862,262 - -0.0 862,262 - -0.0 862,262 - -1.8 862,262 - -0.2 862,305 - -2.7 862,574 + +0.6 862,574 + -0.5 862,574 + -4.2 862,575 - +0.6 862,575 - -1.8 862,575 - +0.8 862,580 + +0.9 862,730 + AMB_RS04115 0.16 +0.9 862,730 + AMB_RS04115 0.16 -4.4 862,731 - AMB_RS04115 0.16 -0.5 862,731 - AMB_RS04115 0.16 -1.2 862,746 - AMB_RS04115 0.17 +0.8 862,746 - AMB_RS04115 0.17 -1.3 862,971 + AMB_RS04115 0.32 +0.1 862,973 + AMB_RS04115 0.32 -1.4 862,973 + AMB_RS04115 0.32 -1.1 862,973 + AMB_RS04115 0.32 -1.0 862,973 + AMB_RS04115 0.32 -0.3 862,973 + AMB_RS04115 0.32 -1.4 862,973 + AMB_RS04115 0.32 -0.0 862,974 - AMB_RS04115 0.32 -0.3 862,974 - AMB_RS04115 0.32 -0.6 862,974 - AMB_RS04115 0.32 -0.2 862,974 - AMB_RS04115 0.32 +0.7 862,974 - AMB_RS04115 0.32 -0.1 862,974 - AMB_RS04115 0.32 -0.5 863,096 + AMB_RS04115 0.41 -2.4 863,096 + AMB_RS04115 0.41 -1.4 863,097 - AMB_RS04115 0.41 +0.1 863,097 - AMB_RS04115 0.41 +0.4 863,097 - AMB_RS04115 0.41 -2.7 863,246 + AMB_RS04115 0.51 -0.0 863,247 - AMB_RS04115 0.51 +1.0 863,247 - AMB_RS04115 0.51 +0.5 863,247 - AMB_RS04115 0.51 -0.0 863,247 - AMB_RS04115 0.51 -0.8 863,247 - AMB_RS04115 0.51 +1.6 863,247 - AMB_RS04115 0.51 -0.8 863,247 - AMB_RS04115 0.51 +1.6
Or see this region's nucleotide sequence