Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04065

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04060 and AMB_RS04065 are separated by 92 nucleotidesAMB_RS04065 and AMB_RS04070 are separated by 193 nucleotides AMB_RS04060: AMB_RS04060 - pyridoxal phosphate-dependent aminotransferase, at 850,574 to 851,740 _RS04060 AMB_RS04065: AMB_RS04065 - class I SAM-dependent methyltransferase, at 851,833 to 852,636 _RS04065 AMB_RS04070: AMB_RS04070 - hypothetical protein, at 852,830 to 855,037 _RS04070 Position (kb) 851 852 853Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 850.879 kb on + strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.879 kb on + strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.880 kb on - strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.881 kb on + strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 850.882 kb on - strand, within AMB_RS04060at 851.118 kb on + strand, within AMB_RS04060at 851.118 kb on + strand, within AMB_RS04060at 851.119 kb on - strand, within AMB_RS04060at 851.194 kb on - strand, within AMB_RS04060at 851.194 kb on - strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.352 kb on + strand, within AMB_RS04060at 851.353 kb on - strand, within AMB_RS04060at 851.353 kb on - strand, within AMB_RS04060at 851.378 kb on + strand, within AMB_RS04060at 851.378 kb on + strand, within AMB_RS04060at 851.379 kb on - strand, within AMB_RS04060at 851.539 kb on + strand, within AMB_RS04060at 851.541 kb on + strand, within AMB_RS04060at 851.541 kb on + strand, within AMB_RS04060at 851.542 kb on - strand, within AMB_RS04060at 851.631 kb on + strandat 851.631 kb on + strandat 851.631 kb on + strandat 851.631 kb on + strandat 851.631 kb on + strandat 851.632 kb on - strandat 851.745 kb on - strandat 851.801 kb on + strandat 851.801 kb on + strandat 851.801 kb on + strandat 851.801 kb on + strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.802 kb on - strandat 851.806 kb on + strandat 851.806 kb on + strandat 851.807 kb on - strandat 851.810 kb on - strandat 851.927 kb on + strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 851.955 kb on - strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.105 kb on + strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.106 kb on - strand, within AMB_RS04065at 852.179 kb on + strand, within AMB_RS04065at 852.180 kb on - strand, within AMB_RS04065at 852.180 kb on - strand, within AMB_RS04065at 852.188 kb on + strand, within AMB_RS04065at 852.189 kb on - strand, within AMB_RS04065at 852.189 kb on - strand, within AMB_RS04065at 852.443 kb on + strand, within AMB_RS04065at 852.443 kb on + strand, within AMB_RS04065at 852.516 kb on - strand, within AMB_RS04065at 852.516 kb on - strand, within AMB_RS04065at 852.589 kb on - strandat 852.589 kb on - strandat 852.590 kb on + strandat 852.591 kb on - strandat 852.647 kb on - strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.684 kb on + strandat 852.685 kb on - strandat 852.685 kb on - strandat 852.685 kb on - strandat 852.745 kb on - strandat 852.745 kb on - strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.755 kb on + strandat 852.756 kb on - strandat 852.756 kb on - strandat 852.769 kb on + strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.770 kb on - strandat 852.929 kb on + strandat 852.929 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.935 kb on + strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 852.936 kb on - strandat 853.061 kb on + strand, within AMB_RS04070at 853.207 kb on + strand, within AMB_RS04070at 853.244 kb on + strand, within AMB_RS04070at 853.251 kb on + strand, within AMB_RS04070at 853.251 kb on + strand, within AMB_RS04070at 853.252 kb on - strand, within AMB_RS04070at 853.451 kb on + strand, within AMB_RS04070at 853.451 kb on + strand, within AMB_RS04070at 853.452 kb on - strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.454 kb on + strand, within AMB_RS04070at 853.455 kb on - strand, within AMB_RS04070at 853.455 kb on - strand, within AMB_RS04070at 853.562 kb on + strand, within AMB_RS04070at 853.562 kb on + strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.563 kb on - strand, within AMB_RS04070at 853.565 kb on + strand, within AMB_RS04070at 853.565 kb on + strand, within AMB_RS04070at 853.565 kb on + strand, within AMB_RS04070at 853.566 kb on - strand, within AMB_RS04070at 853.566 kb on - strand, within AMB_RS04070at 853.566 kb on - strand, within AMB_RS04070at 853.613 kb on + strand, within AMB_RS04070at 853.613 kb on + strand, within AMB_RS04070at 853.613 kb on + strand, within AMB_RS04070at 853.614 kb on - strand, within AMB_RS04070

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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850,879 + AMB_RS04060 0.26 -1.9
850,879 + AMB_RS04060 0.26 -0.8
850,879 + AMB_RS04060 0.26 +0.6
850,880 - AMB_RS04060 0.26 -0.4
850,880 - AMB_RS04060 0.26 -0.0
850,880 - AMB_RS04060 0.26 -0.7
850,880 - AMB_RS04060 0.26 -0.3
850,881 + AMB_RS04060 0.26 -0.9
850,881 + AMB_RS04060 0.26 -0.9
850,881 + AMB_RS04060 0.26 -0.1
850,881 + AMB_RS04060 0.26 -0.4
850,881 + AMB_RS04060 0.26 -2.4
850,882 - AMB_RS04060 0.26 +0.6
850,882 - AMB_RS04060 0.26 -1.2
850,882 - AMB_RS04060 0.26 -1.2
850,882 - AMB_RS04060 0.26 +0.2
850,882 - AMB_RS04060 0.26 -0.4
851,118 + AMB_RS04060 0.47 -0.4
851,118 + AMB_RS04060 0.47 -2.3
851,119 - AMB_RS04060 0.47 +1.4
851,194 - AMB_RS04060 0.53 -1.4
851,194 - AMB_RS04060 0.53 -0.7
851,352 + AMB_RS04060 0.67 -4.2
851,352 + AMB_RS04060 0.67 -0.0
851,352 + AMB_RS04060 0.67 -1.2
851,352 + AMB_RS04060 0.67 +0.0
851,353 - AMB_RS04060 0.67 -1.0
851,353 - AMB_RS04060 0.67 -0.8
851,378 + AMB_RS04060 0.69 -0.7
851,378 + AMB_RS04060 0.69 -0.6
851,379 - AMB_RS04060 0.69 -1.8
851,539 + AMB_RS04060 0.83 -0.1
851,541 + AMB_RS04060 0.83 +1.6
851,541 + AMB_RS04060 0.83 -3.0
851,542 - AMB_RS04060 0.83 -2.3
851,631 + -0.6
851,631 + -1.0
851,631 + +0.5
851,631 + -1.4
851,631 + -3.0
851,632 - -2.0
851,745 - -1.1
851,801 + -0.9
851,801 + -0.7
851,801 + -0.7
851,801 + -0.0
851,802 - -1.4
851,802 - -0.3
851,802 - -3.1
851,802 - +0.9
851,802 - -0.0
851,806 + -0.0
851,806 + -0.4
851,807 - -2.9
851,810 - -1.7
851,927 + AMB_RS04065 0.12 -2.6
851,955 - AMB_RS04065 0.15 +0.1
851,955 - AMB_RS04065 0.15 -0.4
851,955 - AMB_RS04065 0.15 -0.2
852,105 + AMB_RS04065 0.34 -1.0
852,105 + AMB_RS04065 0.34 -0.1
852,105 + AMB_RS04065 0.34 -1.9
852,105 + AMB_RS04065 0.34 -3.1
852,105 + AMB_RS04065 0.34 -1.3
852,105 + AMB_RS04065 0.34 -0.4
852,106 - AMB_RS04065 0.34 +0.4
852,106 - AMB_RS04065 0.34 -0.2
852,106 - AMB_RS04065 0.34 +0.7
852,106 - AMB_RS04065 0.34 -1.2
852,179 + AMB_RS04065 0.43 +0.8
852,180 - AMB_RS04065 0.43 -1.4
852,180 - AMB_RS04065 0.43 +0.5
852,188 + AMB_RS04065 0.44 -3.8
852,189 - AMB_RS04065 0.44 +0.1
852,189 - AMB_RS04065 0.44 -0.5
852,443 + AMB_RS04065 0.76 -1.4
852,443 + AMB_RS04065 0.76 +0.7
852,516 - AMB_RS04065 0.85 -1.0
852,516 - AMB_RS04065 0.85 -1.2
852,589 - -2.6
852,589 - +0.4
852,590 + -2.4
852,591 - -0.1
852,647 - -0.0
852,684 + -0.0
852,684 + -0.9
852,684 + +0.1
852,684 + -1.4
852,684 + +0.7
852,684 + -0.7
852,685 - -1.6
852,685 - -1.6
852,685 - +0.6
852,745 - -1.0
852,745 - -3.2
852,755 + -0.7
852,755 + -0.4
852,755 + -0.3
852,755 + +0.0
852,755 + -0.4
852,756 - +1.6
852,756 - +0.4
852,769 + -1.6
852,770 - +0.8
852,770 - -0.5
852,770 - -3.1
852,770 - -0.4
852,770 - +0.1
852,770 - -1.1
852,770 - -0.0
852,929 + -1.1
852,929 + -0.7
852,935 + -1.2
852,935 + -0.4
852,935 + +0.4
852,935 + -1.4
852,935 + +0.8
852,935 + +1.0
852,935 + -0.2
852,935 + +0.1
852,935 + -1.4
852,935 + +0.8
852,935 + -0.4
852,936 - -4.3
852,936 - +0.4
852,936 - -1.0
852,936 - -0.7
852,936 - -1.2
852,936 - +0.1
853,061 + AMB_RS04070 0.10 +0.5
853,207 + AMB_RS04070 0.17 +1.1
853,244 + AMB_RS04070 0.19 -2.9
853,251 + AMB_RS04070 0.19 -0.7
853,251 + AMB_RS04070 0.19 -0.4
853,252 - AMB_RS04070 0.19 -2.0
853,451 + AMB_RS04070 0.28 +0.8
853,451 + AMB_RS04070 0.28 -0.1
853,452 - AMB_RS04070 0.28 -0.0
853,454 + AMB_RS04070 0.28 -2.2
853,454 + AMB_RS04070 0.28 -0.6
853,454 + AMB_RS04070 0.28 -1.2
853,454 + AMB_RS04070 0.28 -3.6
853,455 - AMB_RS04070 0.28 -1.2
853,455 - AMB_RS04070 0.28 +0.9
853,562 + AMB_RS04070 0.33 -0.6
853,562 + AMB_RS04070 0.33 +1.1
853,563 - AMB_RS04070 0.33 -0.7
853,563 - AMB_RS04070 0.33 -0.8
853,563 - AMB_RS04070 0.33 -1.6
853,563 - AMB_RS04070 0.33 -0.4
853,565 + AMB_RS04070 0.33 -0.2
853,565 + AMB_RS04070 0.33 -0.4
853,565 + AMB_RS04070 0.33 +0.0
853,566 - AMB_RS04070 0.33 -3.3
853,566 - AMB_RS04070 0.33 -0.7
853,566 - AMB_RS04070 0.33 -1.0
853,613 + AMB_RS04070 0.35 -1.0
853,613 + AMB_RS04070 0.35 -1.8
853,613 + AMB_RS04070 0.35 -0.4
853,614 - AMB_RS04070 0.36 +0.6

Or see this region's nucleotide sequence