Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03470

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03465 and AMB_RS03470 are separated by 6 nucleotidesAMB_RS03470 and AMB_RS03475 are separated by 5 nucleotides AMB_RS03465: AMB_RS03465 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 723,423 to 725,420 _RS03465 AMB_RS03470: AMB_RS03470 - enoyl-CoA hydratase, at 725,427 to 726,209 _RS03470 AMB_RS03475: AMB_RS03475 - methylcrotonoyl-CoA carboxylase, at 726,215 to 727,822 _RS03475 Position (kb) 725 726 727Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 724.588 kb on + strand, within AMB_RS03465at 724.618 kb on + strand, within AMB_RS03465at 724.618 kb on + strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.753 kb on + strand, within AMB_RS03465at 724.816 kb on + strand, within AMB_RS03465at 724.817 kb on - strand, within AMB_RS03465at 724.817 kb on - strand, within AMB_RS03465at 725.020 kb on + strand, within AMB_RS03465at 725.242 kb on + strandat 725.242 kb on + strandat 725.242 kb on + strandat 725.242 kb on + strandat 725.243 kb on - strandat 725.243 kb on - strandat 725.243 kb on - strandat 725.243 kb on - strandat 725.326 kb on + strandat 725.326 kb on + strandat 725.327 kb on - strandat 725.429 kb on - strandat 725.429 kb on - strandat 725.731 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.771 kb on - strand, within AMB_RS03470at 725.771 kb on - strand, within AMB_RS03470at 725.771 kb on - strand, within AMB_RS03470at 725.990 kb on - strand, within AMB_RS03470at 726.216 kb on + strandat 726.216 kb on + strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.346 kb on - strandat 726.348 kb on + strandat 726.348 kb on + strandat 726.348 kb on + strandat 726.348 kb on + strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.370 kb on - strandat 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.517 kb on + strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.518 kb on - strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.519 kb on + strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.520 kb on - strand, within AMB_RS03475at 726.537 kb on + strand, within AMB_RS03475at 726.537 kb on + strand, within AMB_RS03475at 726.538 kb on - strand, within AMB_RS03475at 726.558 kb on + strand, within AMB_RS03475at 726.558 kb on + strand, within AMB_RS03475at 726.559 kb on - strand, within AMB_RS03475at 726.559 kb on - strand, within AMB_RS03475at 726.669 kb on + strand, within AMB_RS03475at 726.670 kb on - strand, within AMB_RS03475at 726.670 kb on - strand, within AMB_RS03475at 726.823 kb on + strand, within AMB_RS03475at 726.824 kb on - strand, within AMB_RS03475at 726.824 kb on - strand, within AMB_RS03475at 726.855 kb on + strand, within AMB_RS03475at 726.855 kb on + strand, within AMB_RS03475at 726.855 kb on + strand, within AMB_RS03475at 726.922 kb on - strand, within AMB_RS03475at 726.922 kb on - strand, within AMB_RS03475at 726.922 kb on - strand, within AMB_RS03475at 726.954 kb on + strand, within AMB_RS03475at 726.972 kb on + strand, within AMB_RS03475at 726.972 kb on + strand, within AMB_RS03475at 726.972 kb on + strand, within AMB_RS03475at 726.972 kb on + strand, within AMB_RS03475at 726.973 kb on - strand, within AMB_RS03475at 726.973 kb on - strand, within AMB_RS03475at 727.080 kb on + strand, within AMB_RS03475at 727.080 kb on + strand, within AMB_RS03475

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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724,588 + AMB_RS03465 0.58 -2.0
724,618 + AMB_RS03465 0.60 -3.3
724,618 + AMB_RS03465 0.60 +0.2
724,619 - AMB_RS03465 0.60 -2.3
724,619 - AMB_RS03465 0.60 +0.8
724,619 - AMB_RS03465 0.60 -2.0
724,619 - AMB_RS03465 0.60 -2.4
724,619 - AMB_RS03465 0.60 +0.3
724,619 - AMB_RS03465 0.60 -4.0
724,619 - AMB_RS03465 0.60 -5.3
724,753 + AMB_RS03465 0.67 -1.2
724,816 + AMB_RS03465 0.70 +0.1
724,817 - AMB_RS03465 0.70 +0.2
724,817 - AMB_RS03465 0.70 -0.1
725,020 + AMB_RS03465 0.80 +0.8
725,242 + -0.2
725,242 + +0.0
725,242 + -1.4
725,242 + -0.9
725,243 - -2.7
725,243 - -0.0
725,243 - -2.0
725,243 - +0.1
725,326 + +1.6
725,326 + -2.2
725,327 - +0.5
725,429 - -0.8
725,429 - -0.4
725,731 + AMB_RS03470 0.39 +0.2
725,770 + AMB_RS03470 0.44 -0.4
725,770 + AMB_RS03470 0.44 -0.5
725,770 + AMB_RS03470 0.44 -2.5
725,770 + AMB_RS03470 0.44 -0.1
725,770 + AMB_RS03470 0.44 +1.6
725,770 + AMB_RS03470 0.44 +0.6
725,770 + AMB_RS03470 0.44 -1.7
725,771 - AMB_RS03470 0.44 -0.3
725,771 - AMB_RS03470 0.44 -0.6
725,771 - AMB_RS03470 0.44 -1.0
725,990 - AMB_RS03470 0.72 -1.9
726,216 + -2.1
726,216 + -1.2
726,217 - +1.1
726,217 - -0.7
726,217 - -0.0
726,217 - -0.9
726,217 - -1.6
726,217 - -0.2
726,346 - -3.8
726,348 + -1.0
726,348 + -2.5
726,348 + -0.4
726,348 + -1.7
726,349 - -0.7
726,349 - -0.2
726,349 - +0.0
726,349 - -2.1
726,349 - -0.0
726,370 - -2.7
726,517 + AMB_RS03475 0.19 +1.1
726,517 + AMB_RS03475 0.19 -3.3
726,517 + AMB_RS03475 0.19 +1.6
726,517 + AMB_RS03475 0.19 -2.0
726,517 + AMB_RS03475 0.19 -1.9
726,517 + AMB_RS03475 0.19 -1.4
726,517 + AMB_RS03475 0.19 -1.2
726,517 + AMB_RS03475 0.19 -0.2
726,517 + AMB_RS03475 0.19 +0.2
726,517 + AMB_RS03475 0.19 +0.4
726,518 - AMB_RS03475 0.19 +0.4
726,518 - AMB_RS03475 0.19 -1.4
726,518 - AMB_RS03475 0.19 +0.7
726,518 - AMB_RS03475 0.19 -1.5
726,518 - AMB_RS03475 0.19 -1.2
726,518 - AMB_RS03475 0.19 -1.4
726,518 - AMB_RS03475 0.19 +0.4
726,518 - AMB_RS03475 0.19 -1.2
726,519 + AMB_RS03475 0.19 -4.0
726,519 + AMB_RS03475 0.19 +1.2
726,519 + AMB_RS03475 0.19 +0.7
726,519 + AMB_RS03475 0.19 -3.3
726,519 + AMB_RS03475 0.19 -0.4
726,519 + AMB_RS03475 0.19 -1.9
726,519 + AMB_RS03475 0.19 -1.8
726,520 - AMB_RS03475 0.19 -1.9
726,520 - AMB_RS03475 0.19 -0.4
726,520 - AMB_RS03475 0.19 +0.6
726,520 - AMB_RS03475 0.19 -0.5
726,520 - AMB_RS03475 0.19 +0.0
726,520 - AMB_RS03475 0.19 -0.0
726,520 - AMB_RS03475 0.19 -0.4
726,520 - AMB_RS03475 0.19 -1.6
726,537 + AMB_RS03475 0.20 -0.4
726,537 + AMB_RS03475 0.20 -1.1
726,538 - AMB_RS03475 0.20 -0.4
726,558 + AMB_RS03475 0.21 -0.7
726,558 + AMB_RS03475 0.21 -0.6
726,559 - AMB_RS03475 0.21 -1.0
726,559 - AMB_RS03475 0.21 -0.1
726,669 + AMB_RS03475 0.28 +0.7
726,670 - AMB_RS03475 0.28 -0.4
726,670 - AMB_RS03475 0.28 -1.4
726,823 + AMB_RS03475 0.38 -1.2
726,824 - AMB_RS03475 0.38 -1.4
726,824 - AMB_RS03475 0.38 -2.7
726,855 + AMB_RS03475 0.40 -1.2
726,855 + AMB_RS03475 0.40 -2.6
726,855 + AMB_RS03475 0.40 -0.7
726,922 - AMB_RS03475 0.44 -0.2
726,922 - AMB_RS03475 0.44 +0.0
726,922 - AMB_RS03475 0.44 -1.6
726,954 + AMB_RS03475 0.46 -1.7
726,972 + AMB_RS03475 0.47 +1.2
726,972 + AMB_RS03475 0.47 -1.9
726,972 + AMB_RS03475 0.47 +0.0
726,972 + AMB_RS03475 0.47 -2.7
726,973 - AMB_RS03475 0.47 -3.1
726,973 - AMB_RS03475 0.47 -1.0
727,080 + AMB_RS03475 0.54 -2.1
727,080 + AMB_RS03475 0.54 +0.1

Or see this region's nucleotide sequence