Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02305 and AMB_RS02310 are separated by 67 nucleotides AMB_RS02310 and AMB_RS02315 overlap by 1 nucleotides AMB_RS02315 and AMB_RS02320 overlap by 11 nucleotides
AMB_RS02305: AMB_RS02305 - transposase, at 489,669 to 491,870
_RS02305
AMB_RS02310: AMB_RS02310 - ATP-binding protein, at 491,938 to 492,681
_RS02310
AMB_RS02315: AMB_RS02315 - hypothetical protein, at 492,681 to 493,325
_RS02315
AMB_RS02320: AMB_RS02320 - hypothetical protein, at 493,315 to 493,716
_RS02320
Position (kb) 491
492
493 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 491.302 kb on - strand, within AMB_RS02305 at 491.302 kb on - strand, within AMB_RS02305 at 491.302 kb on - strand, within AMB_RS02305 at 491.302 kb on - strand, within AMB_RS02305 at 491.326 kb on - strand, within AMB_RS02305 at 491.812 kb on - strand at 491.923 kb on - strand at 491.923 kb on - strand at 492.055 kb on + strand, within AMB_RS02310 at 492.055 kb on + strand, within AMB_RS02310 at 492.055 kb on + strand, within AMB_RS02310 at 492.056 kb on - strand, within AMB_RS02310 at 492.056 kb on - strand, within AMB_RS02310 at 492.097 kb on + strand, within AMB_RS02310 at 492.098 kb on - strand, within AMB_RS02310 at 492.098 kb on - strand, within AMB_RS02310 at 492.098 kb on - strand, within AMB_RS02310 at 492.098 kb on - strand, within AMB_RS02310 at 492.098 kb on - strand, within AMB_RS02310 at 492.121 kb on + strand, within AMB_RS02310 at 492.122 kb on - strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.325 kb on + strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.326 kb on - strand, within AMB_RS02310 at 492.709 kb on + strand at 492.710 kb on - strand at 492.837 kb on + strand, within AMB_RS02315 at 492.838 kb on - strand, within AMB_RS02315 at 492.864 kb on + strand, within AMB_RS02315 at 492.865 kb on - strand, within AMB_RS02315 at 492.915 kb on + strand, within AMB_RS02315 at 492.915 kb on + strand, within AMB_RS02315 at 492.916 kb on - strand, within AMB_RS02315 at 492.916 kb on - strand, within AMB_RS02315 at 493.107 kb on + strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.108 kb on - strand, within AMB_RS02315 at 493.135 kb on - strand, within AMB_RS02315 at 493.484 kb on - strand, within AMB_RS02320 at 493.484 kb on - strand, within AMB_RS02320 at 493.484 kb on - strand, within AMB_RS02320 at 493.502 kb on - strand, within AMB_RS02320 at 493.502 kb on - strand, within AMB_RS02320 at 493.658 kb on - strand, within AMB_RS02320 at 493.658 kb on - strand, within AMB_RS02320
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 491,302 - AMB_RS02305 0.74 -1.1 491,302 - AMB_RS02305 0.74 -1.8 491,302 - AMB_RS02305 0.74 +0.4 491,302 - AMB_RS02305 0.74 -1.2 491,326 - AMB_RS02305 0.75 -2.1 491,812 - -1.1 491,923 - -1.3 491,923 - -1.3 492,055 + AMB_RS02310 0.16 +0.6 492,055 + AMB_RS02310 0.16 -0.8 492,055 + AMB_RS02310 0.16 +1.7 492,056 - AMB_RS02310 0.16 -0.2 492,056 - AMB_RS02310 0.16 -3.9 492,097 + AMB_RS02310 0.21 +0.7 492,098 - AMB_RS02310 0.22 +0.7 492,098 - AMB_RS02310 0.22 +0.1 492,098 - AMB_RS02310 0.22 +0.3 492,098 - AMB_RS02310 0.22 -0.8 492,098 - AMB_RS02310 0.22 +0.6 492,121 + AMB_RS02310 0.25 -0.5 492,122 - AMB_RS02310 0.25 -1.3 492,325 + AMB_RS02310 0.52 -0.3 492,325 + AMB_RS02310 0.52 -1.1 492,325 + AMB_RS02310 0.52 -0.9 492,325 + AMB_RS02310 0.52 +0.5 492,325 + AMB_RS02310 0.52 -2.1 492,325 + AMB_RS02310 0.52 +0.4 492,326 - AMB_RS02310 0.52 -2.0 492,326 - AMB_RS02310 0.52 -2.3 492,326 - AMB_RS02310 0.52 -1.9 492,326 - AMB_RS02310 0.52 -0.9 492,326 - AMB_RS02310 0.52 -2.0 492,326 - AMB_RS02310 0.52 -0.7 492,326 - AMB_RS02310 0.52 -2.4 492,326 - AMB_RS02310 0.52 -0.0 492,709 + -1.9 492,710 - -1.9 492,837 + AMB_RS02315 0.24 -2.0 492,838 - AMB_RS02315 0.24 -0.6 492,864 + AMB_RS02315 0.28 +1.4 492,865 - AMB_RS02315 0.29 +0.2 492,915 + AMB_RS02315 0.36 -4.0 492,915 + AMB_RS02315 0.36 -0.8 492,916 - AMB_RS02315 0.36 -1.3 492,916 - AMB_RS02315 0.36 +0.1 493,107 + AMB_RS02315 0.66 -0.6 493,108 - AMB_RS02315 0.66 -2.3 493,108 - AMB_RS02315 0.66 -1.6 493,108 - AMB_RS02315 0.66 -0.3 493,108 - AMB_RS02315 0.66 +0.7 493,108 - AMB_RS02315 0.66 -1.3 493,135 - AMB_RS02315 0.70 -0.5 493,484 - AMB_RS02320 0.42 +0.2 493,484 - AMB_RS02320 0.42 +0.4 493,484 - AMB_RS02320 0.42 +0.3 493,502 - AMB_RS02320 0.47 -0.7 493,502 - AMB_RS02320 0.47 +0.0 493,658 - AMB_RS02320 0.85 -0.6 493,658 - AMB_RS02320 0.85 -1.8
Or see this region's nucleotide sequence