Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02005 and AMB_RS02010 are separated by 62 nucleotides AMB_RS02010 and AMB_RS02015 are separated by 2 nucleotides AMB_RS02015 and AMB_RS23830 are separated by 120 nucleotides
AMB_RS02005: AMB_RS02005 - hypothetical protein, at 421,240 to 423,567
_RS02005
AMB_RS02010: AMB_RS02010 - structural protein, at 423,630 to 424,067
_RS02010
AMB_RS02015: AMB_RS02015 - hypothetical protein, at 424,070 to 424,666
_RS02015
AMB_RS23830: AMB_RS23830 - hypothetical protein, at 424,787 to 425,806
_RS23830
Position (kb) 423
424
425 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 422.638 kb on + strand, within AMB_RS02005 at 422.638 kb on + strand, within AMB_RS02005 at 422.733 kb on - strand, within AMB_RS02005 at 422.905 kb on + strand, within AMB_RS02005 at 422.905 kb on + strand, within AMB_RS02005 at 422.905 kb on + strand, within AMB_RS02005 at 422.905 kb on + strand, within AMB_RS02005 at 422.951 kb on - strand, within AMB_RS02005 at 423.046 kb on - strand, within AMB_RS02005 at 423.154 kb on + strand, within AMB_RS02005 at 423.154 kb on + strand, within AMB_RS02005 at 423.154 kb on + strand, within AMB_RS02005 at 423.154 kb on + strand, within AMB_RS02005 at 423.155 kb on - strand, within AMB_RS02005 at 423.308 kb on - strand, within AMB_RS02005 at 423.308 kb on - strand, within AMB_RS02005 at 423.418 kb on + strand at 423.420 kb on + strand at 423.445 kb on + strand at 423.445 kb on + strand at 423.445 kb on + strand at 423.565 kb on + strand at 423.565 kb on + strand at 423.566 kb on - strand at 423.683 kb on + strand, within AMB_RS02010 at 423.684 kb on - strand, within AMB_RS02010 at 423.810 kb on + strand, within AMB_RS02010 at 423.811 kb on - strand, within AMB_RS02010 at 423.891 kb on + strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.892 kb on - strand, within AMB_RS02010 at 423.893 kb on + strand, within AMB_RS02010 at 423.894 kb on - strand, within AMB_RS02010 at 423.894 kb on - strand, within AMB_RS02010 at 424.014 kb on + strand, within AMB_RS02010 at 424.015 kb on - strand, within AMB_RS02010 at 424.287 kb on + strand, within AMB_RS02015 at 424.288 kb on - strand, within AMB_RS02015 at 424.333 kb on + strand, within AMB_RS02015 at 424.333 kb on + strand, within AMB_RS02015 at 424.333 kb on + strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.334 kb on - strand, within AMB_RS02015 at 424.660 kb on + strand at 424.660 kb on + strand at 424.660 kb on + strand at 424.660 kb on + strand at 424.660 kb on + strand at 424.664 kb on + strand at 424.664 kb on + strand at 424.665 kb on - strand at 424.665 kb on - strand at 424.714 kb on - strand at 424.733 kb on - strand at 424.738 kb on - strand at 424.750 kb on + strand at 424.751 kb on - strand at 424.759 kb on + strand at 424.760 kb on - strand at 424.760 kb on - strand at 424.760 kb on - strand at 424.760 kb on - strand at 424.788 kb on + strand at 424.788 kb on + strand at 424.788 kb on + strand at 424.788 kb on + strand at 424.789 kb on - strand at 424.789 kb on - strand at 424.789 kb on - strand at 424.789 kb on - strand at 424.843 kb on + strand at 424.843 kb on + strand at 424.843 kb on + strand at 424.843 kb on + strand at 424.844 kb on - strand at 424.856 kb on - strand at 424.856 kb on - strand at 424.876 kb on + strand at 424.907 kb on - strand, within AMB_RS23830 at 424.907 kb on - strand, within AMB_RS23830 at 424.913 kb on - strand, within AMB_RS23830 at 424.913 kb on - strand, within AMB_RS23830 at 424.913 kb on - strand, within AMB_RS23830 at 424.918 kb on - strand, within AMB_RS23830 at 424.954 kb on + strand, within AMB_RS23830 at 424.955 kb on - strand, within AMB_RS23830 at 424.962 kb on - strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.020 kb on + strand, within AMB_RS23830 at 425.021 kb on - strand, within AMB_RS23830
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 422,638 + AMB_RS02005 0.60 -0.7 422,638 + AMB_RS02005 0.60 -2.3 422,733 - AMB_RS02005 0.64 +0.8 422,905 + AMB_RS02005 0.72 -1.6 422,905 + AMB_RS02005 0.72 -1.9 422,905 + AMB_RS02005 0.72 +0.2 422,905 + AMB_RS02005 0.72 -0.3 422,951 - AMB_RS02005 0.73 +0.1 423,046 - AMB_RS02005 0.78 +0.7 423,154 + AMB_RS02005 0.82 +0.7 423,154 + AMB_RS02005 0.82 -0.9 423,154 + AMB_RS02005 0.82 +0.5 423,154 + AMB_RS02005 0.82 -0.6 423,155 - AMB_RS02005 0.82 -1.8 423,308 - AMB_RS02005 0.89 -1.3 423,308 - AMB_RS02005 0.89 -1.9 423,418 + -0.8 423,420 + -1.7 423,445 + -1.0 423,445 + +1.1 423,445 + -1.3 423,565 + -1.3 423,565 + +0.7 423,566 - -0.4 423,683 + AMB_RS02010 0.12 -0.9 423,684 - AMB_RS02010 0.12 +0.1 423,810 + AMB_RS02010 0.41 -1.3 423,811 - AMB_RS02010 0.41 -0.6 423,891 + AMB_RS02010 0.60 +1.5 423,892 - AMB_RS02010 0.60 -0.9 423,892 - AMB_RS02010 0.60 -2.8 423,892 - AMB_RS02010 0.60 +0.6 423,892 - AMB_RS02010 0.60 -1.5 423,892 - AMB_RS02010 0.60 -1.1 423,892 - AMB_RS02010 0.60 -0.9 423,892 - AMB_RS02010 0.60 +0.1 423,893 + AMB_RS02010 0.60 -1.1 423,894 - AMB_RS02010 0.60 -2.4 423,894 - AMB_RS02010 0.60 +0.1 424,014 + AMB_RS02010 0.88 +1.1 424,015 - AMB_RS02010 0.88 -1.6 424,287 + AMB_RS02015 0.36 -0.0 424,288 - AMB_RS02015 0.37 -0.6 424,333 + AMB_RS02015 0.44 -1.1 424,333 + AMB_RS02015 0.44 -1.4 424,333 + AMB_RS02015 0.44 -0.2 424,334 - AMB_RS02015 0.44 -0.6 424,334 - AMB_RS02015 0.44 +0.1 424,334 - AMB_RS02015 0.44 -0.5 424,334 - AMB_RS02015 0.44 +0.7 424,660 + -0.2 424,660 + -0.5 424,660 + -0.7 424,660 + -1.1 424,660 + -0.7 424,664 + -0.1 424,664 + -1.1 424,665 - -2.8 424,665 - -2.8 424,714 - -3.0 424,733 - -2.0 424,738 - -2.0 424,750 + -4.0 424,751 - -1.8 424,759 + -0.3 424,760 - +0.1 424,760 - -1.1 424,760 - +0.6 424,760 - +1.7 424,788 + -2.1 424,788 + -0.1 424,788 + +0.2 424,788 + +1.9 424,789 - -0.6 424,789 - -2.0 424,789 - +1.7 424,789 - -0.3 424,843 + -0.9 424,843 + -0.3 424,843 + -1.5 424,843 + -0.1 424,844 - +0.2 424,856 - +0.9 424,856 - -0.9 424,876 + +0.1 424,907 - AMB_RS23830 0.12 +0.2 424,907 - AMB_RS23830 0.12 -1.3 424,913 - AMB_RS23830 0.12 -0.3 424,913 - AMB_RS23830 0.12 +0.2 424,913 - AMB_RS23830 0.12 +0.1 424,918 - AMB_RS23830 0.13 -1.3 424,954 + AMB_RS23830 0.16 -2.6 424,955 - AMB_RS23830 0.16 +0.1 424,962 - AMB_RS23830 0.17 +0.7 425,020 + AMB_RS23830 0.23 -0.3 425,020 + AMB_RS23830 0.23 +1.7 425,020 + AMB_RS23830 0.23 -1.1 425,020 + AMB_RS23830 0.23 -0.6 425,021 - AMB_RS23830 0.23 +0.2
Or see this region's nucleotide sequence