Experiment: 150_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00835 and AMB_RS00840 are separated by 173 nucleotides AMB_RS00840 and AMB_RS00845 are separated by 55 nucleotides AMB_RS00845 and AMB_RS00850 are separated by 50 nucleotides
AMB_RS00835: AMB_RS00835 - cupin fold metalloprotein, WbuC family, at 187,538 to 188,020
_RS00835
AMB_RS00840: AMB_RS00840 - DUF992 domain-containing protein, at 188,194 to 188,670
_RS00840
AMB_RS00845: AMB_RS00845 - UDP-N-acetylmuramate--alanine ligase, at 188,726 to 190,123
_RS00845
AMB_RS00850: AMB_RS00850 - LD-carboxypeptidase, at 190,174 to 191,019
_RS00850
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 187.954 kb on + strand, within AMB_RS00835 at 188.019 kb on - strand at 188.058 kb on + strand at 188.058 kb on + strand at 188.058 kb on + strand at 188.059 kb on - strand at 188.059 kb on - strand at 188.059 kb on - strand at 188.098 kb on + strand at 188.099 kb on - strand at 188.105 kb on + strand at 188.106 kb on - strand at 188.106 kb on - strand at 188.106 kb on - strand at 188.106 kb on - strand at 188.181 kb on + strand at 188.181 kb on + strand at 188.181 kb on + strand at 188.181 kb on + strand at 188.181 kb on + strand at 188.181 kb on + strand at 188.182 kb on - strand at 188.182 kb on - strand at 188.182 kb on - strand at 188.182 kb on - strand at 188.182 kb on - strand at 188.182 kb on - strand at 188.182 kb on - strand at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.323 kb on + strand, within AMB_RS00840 at 188.324 kb on - strand, within AMB_RS00840 at 188.324 kb on - strand, within AMB_RS00840 at 188.324 kb on - strand, within AMB_RS00840 at 188.324 kb on - strand, within AMB_RS00840 at 188.324 kb on - strand, within AMB_RS00840 at 188.324 kb on - strand, within AMB_RS00840 at 188.359 kb on + strand, within AMB_RS00840 at 188.359 kb on + strand, within AMB_RS00840 at 188.360 kb on - strand, within AMB_RS00840 at 188.360 kb on - strand, within AMB_RS00840 at 188.360 kb on - strand, within AMB_RS00840 at 188.360 kb on - strand, within AMB_RS00840 at 188.387 kb on - strand, within AMB_RS00840 at 188.387 kb on - strand, within AMB_RS00840 at 188.387 kb on - strand, within AMB_RS00840 at 188.387 kb on - strand, within AMB_RS00840 at 188.452 kb on + strand, within AMB_RS00840 at 188.452 kb on + strand, within AMB_RS00840 at 188.453 kb on - strand, within AMB_RS00840 at 188.453 kb on - strand, within AMB_RS00840 at 188.503 kb on + strand, within AMB_RS00840 at 188.503 kb on + strand, within AMB_RS00840 at 188.503 kb on + strand, within AMB_RS00840 at 188.503 kb on + strand, within AMB_RS00840 at 188.503 kb on + strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.504 kb on - strand, within AMB_RS00840 at 188.637 kb on + strand at 188.637 kb on + strand at 188.638 kb on - strand at 188.638 kb on - strand at 188.638 kb on - strand at 188.644 kb on + strand at 188.645 kb on - strand at 188.668 kb on + strand at 188.668 kb on + strand at 188.668 kb on + strand at 188.669 kb on - strand at 188.669 kb on - strand at 188.669 kb on - strand at 188.727 kb on + strand at 188.728 kb on - strand at 188.728 kb on - strand at 188.728 kb on - strand at 188.728 kb on - strand at 188.728 kb on - strand at 189.406 kb on - strand, within AMB_RS00845 at 189.406 kb on - strand, within AMB_RS00845 at 189.579 kb on + strand, within AMB_RS00845 at 189.579 kb on + strand, within AMB_RS00845 at 189.580 kb on - strand, within AMB_RS00845 at 189.978 kb on + strand, within AMB_RS00845 at 189.979 kb on - strand, within AMB_RS00845 at 190.105 kb on - strand at 190.105 kb on - strand at 190.105 kb on - strand at 190.486 kb on + strand, within AMB_RS00850 at 190.528 kb on + strand, within AMB_RS00850 at 190.689 kb on + strand, within AMB_RS00850 at 190.690 kb on - strand, within AMB_RS00850 at 190.777 kb on + strand, within AMB_RS00850 at 190.777 kb on + strand, within AMB_RS00850 at 190.783 kb on + strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_1 remove 187,954 + AMB_RS00835 0.86 -1.4 188,019 - +0.2 188,058 + -0.8 188,058 + -0.2 188,058 + -0.0 188,059 - -0.9 188,059 - +0.2 188,059 - -0.7 188,098 + -0.2 188,099 - -1.5 188,105 + -0.0 188,106 - -1.6 188,106 - -0.6 188,106 - +0.8 188,106 - -0.5 188,181 + -0.0 188,181 + -1.0 188,181 + -0.5 188,181 + -1.8 188,181 + -0.5 188,181 + -1.1 188,182 - -0.3 188,182 - -2.0 188,182 - -2.0 188,182 - -1.0 188,182 - -0.2 188,182 - -0.5 188,182 - +0.6 188,323 + AMB_RS00840 0.27 +0.2 188,323 + AMB_RS00840 0.27 -0.2 188,323 + AMB_RS00840 0.27 -0.3 188,323 + AMB_RS00840 0.27 +1.3 188,323 + AMB_RS00840 0.27 +0.2 188,323 + AMB_RS00840 0.27 +0.5 188,323 + AMB_RS00840 0.27 -0.6 188,323 + AMB_RS00840 0.27 -3.4 188,323 + AMB_RS00840 0.27 -0.3 188,324 - AMB_RS00840 0.27 -1.5 188,324 - AMB_RS00840 0.27 +0.1 188,324 - AMB_RS00840 0.27 +0.3 188,324 - AMB_RS00840 0.27 -0.5 188,324 - AMB_RS00840 0.27 +0.4 188,324 - AMB_RS00840 0.27 +0.0 188,359 + AMB_RS00840 0.35 -0.5 188,359 + AMB_RS00840 0.35 -0.8 188,360 - AMB_RS00840 0.35 -0.1 188,360 - AMB_RS00840 0.35 -0.7 188,360 - AMB_RS00840 0.35 -1.0 188,360 - AMB_RS00840 0.35 -1.8 188,387 - AMB_RS00840 0.40 -2.1 188,387 - AMB_RS00840 0.40 -0.7 188,387 - AMB_RS00840 0.40 -0.5 188,387 - AMB_RS00840 0.40 +0.4 188,452 + AMB_RS00840 0.54 -1.2 188,452 + AMB_RS00840 0.54 -0.5 188,453 - AMB_RS00840 0.54 +0.3 188,453 - AMB_RS00840 0.54 -0.5 188,503 + AMB_RS00840 0.65 -0.5 188,503 + AMB_RS00840 0.65 -0.5 188,503 + AMB_RS00840 0.65 -0.5 188,503 + AMB_RS00840 0.65 -2.2 188,503 + AMB_RS00840 0.65 -0.5 188,504 - AMB_RS00840 0.65 -0.2 188,504 - AMB_RS00840 0.65 +0.6 188,504 - AMB_RS00840 0.65 +0.8 188,504 - AMB_RS00840 0.65 -1.2 188,504 - AMB_RS00840 0.65 +0.7 188,504 - AMB_RS00840 0.65 -1.0 188,504 - AMB_RS00840 0.65 +4.7 188,637 + -2.4 188,637 + -0.5 188,638 - +1.8 188,638 - +0.7 188,638 - -0.2 188,644 + -0.3 188,645 - -0.4 188,668 + -0.5 188,668 + +0.8 188,668 + +0.0 188,669 - -2.3 188,669 - -2.3 188,669 - -0.8 188,727 + -2.1 188,728 - -2.1 188,728 - -0.5 188,728 - -0.5 188,728 - +0.0 188,728 - -0.6 189,406 - AMB_RS00845 0.49 +1.8 189,406 - AMB_RS00845 0.49 -1.0 189,579 + AMB_RS00845 0.61 +0.2 189,579 + AMB_RS00845 0.61 +0.2 189,580 - AMB_RS00845 0.61 +0.6 189,978 + AMB_RS00845 0.90 -1.4 189,979 - AMB_RS00845 0.90 +0.0 190,105 - -2.0 190,105 - -0.5 190,105 - +1.2 190,486 + AMB_RS00850 0.37 -1.3 190,528 + AMB_RS00850 0.42 -1.3 190,689 + AMB_RS00850 0.61 -2.9 190,690 - AMB_RS00850 0.61 -0.3 190,777 + AMB_RS00850 0.71 +0.4 190,777 + AMB_RS00850 0.71 -0.2 190,783 + AMB_RS00850 0.72 -1.9 190,784 - AMB_RS00850 0.72 -3.2 190,784 - AMB_RS00850 0.72 -2.3 190,784 - AMB_RS00850 0.72 -0.4 190,949 - -0.7
Or see this region's nucleotide sequence