Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00650

Experiment: 150_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23820 and AMB_RS00650 overlap by 12 nucleotidesAMB_RS00650 and AMB_RS00655 overlap by 4 nucleotides AMB_RS23820: AMB_RS23820 - hypothetical protein, at 147,473 to 148,933 _RS23820 AMB_RS00650: AMB_RS00650 - hypothetical protein, at 148,922 to 150,187 _RS00650 AMB_RS00655: AMB_RS00655 - histidinol-phosphate aminotransferase family protein, at 150,184 to 151,299 _RS00655 Position (kb) 148 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 147.925 kb on + strand, within AMB_RS23820at 147.926 kb on - strand, within AMB_RS23820at 147.926 kb on - strand, within AMB_RS23820at 147.926 kb on - strand, within AMB_RS23820at 147.969 kb on + strand, within AMB_RS23820at 148.035 kb on + strand, within AMB_RS23820at 148.035 kb on + strand, within AMB_RS23820at 148.035 kb on + strand, within AMB_RS23820at 148.035 kb on + strand, within AMB_RS23820at 148.035 kb on + strand, within AMB_RS23820at 148.035 kb on + strand, within AMB_RS23820at 148.036 kb on - strand, within AMB_RS23820at 148.050 kb on - strand, within AMB_RS23820at 148.239 kb on - strand, within AMB_RS23820at 148.385 kb on - strand, within AMB_RS23820at 148.440 kb on + strand, within AMB_RS23820at 148.440 kb on + strand, within AMB_RS23820at 148.440 kb on + strand, within AMB_RS23820at 148.440 kb on + strand, within AMB_RS23820at 148.440 kb on + strand, within AMB_RS23820at 148.440 kb on + strand, within AMB_RS23820at 148.441 kb on - strand, within AMB_RS23820at 148.441 kb on - strand, within AMB_RS23820at 148.441 kb on - strand, within AMB_RS23820at 148.441 kb on - strand, within AMB_RS23820at 148.477 kb on + strand, within AMB_RS23820at 148.507 kb on + strand, within AMB_RS23820at 148.507 kb on + strand, within AMB_RS23820at 148.573 kb on + strand, within AMB_RS23820at 148.573 kb on + strand, within AMB_RS23820

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_1
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147,925 + AMB_RS23820 0.31 -0.5
147,926 - AMB_RS23820 0.31 +0.8
147,926 - AMB_RS23820 0.31 +0.3
147,926 - AMB_RS23820 0.31 -1.3
147,969 + AMB_RS23820 0.34 -1.2
148,035 + AMB_RS23820 0.38 -0.3
148,035 + AMB_RS23820 0.38 +1.2
148,035 + AMB_RS23820 0.38 -0.2
148,035 + AMB_RS23820 0.38 -2.1
148,035 + AMB_RS23820 0.38 +4.2
148,035 + AMB_RS23820 0.38 -0.9
148,036 - AMB_RS23820 0.39 -1.3
148,050 - AMB_RS23820 0.39 -3.0
148,239 - AMB_RS23820 0.52 -1.5
148,385 - AMB_RS23820 0.62 -0.3
148,440 + AMB_RS23820 0.66 +0.8
148,440 + AMB_RS23820 0.66 -0.8
148,440 + AMB_RS23820 0.66 -0.5
148,440 + AMB_RS23820 0.66 -0.5
148,440 + AMB_RS23820 0.66 -1.0
148,440 + AMB_RS23820 0.66 +0.7
148,441 - AMB_RS23820 0.66 +0.3
148,441 - AMB_RS23820 0.66 -1.1
148,441 - AMB_RS23820 0.66 -0.5
148,441 - AMB_RS23820 0.66 -0.2
148,477 + AMB_RS23820 0.69 -1.0
148,507 + AMB_RS23820 0.71 -0.5
148,507 + AMB_RS23820 0.71 -0.8
148,573 + AMB_RS23820 0.75 -0.5
148,573 + AMB_RS23820 0.75 -1.3

Or see this region's nucleotide sequence