Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03910 and PS417_03915 are separated by 48 nucleotides PS417_03915 and PS417_03920 are separated by 145 nucleotides PS417_03920 and PS417_03925 are separated by 47 nucleotides PS417_03925 and PS417_03930 are separated by 191 nucleotides
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
PS417_03915: PS417_03915 - tRNA-Thr, at 875,619 to 875,691
_03915
PS417_03920: PS417_03920 - dephospho-CoA kinase, at 875,837 to 876,142
_03920
PS417_03925: PS417_03925 - nicotinate-nucleotide pyrophosphorylase, at 876,190 to 877,038
_03925
PS417_03930: PS417_03930 - thymidine phosphorylase, at 877,230 to 879,353
_03930
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1 at 875.210 kb on + strand, within PS417_03910 at 875.318 kb on + strand, within PS417_03910 at 875.319 kb on - strand, within PS417_03910 at 875.319 kb on - strand, within PS417_03910 at 875.372 kb on - strand, within PS417_03910 at 875.372 kb on - strand, within PS417_03910 at 875.505 kb on + strand at 875.604 kb on + strand at 875.604 kb on + strand at 875.627 kb on - strand, within PS417_03915 at 875.627 kb on - strand, within PS417_03915 at 875.627 kb on - strand, within PS417_03915 at 875.711 kb on - strand at 875.780 kb on - strand at 875.826 kb on - strand at 875.892 kb on - strand, within PS417_03920 at 876.000 kb on - strand, within PS417_03920 at 876.026 kb on + strand, within PS417_03920 at 876.026 kb on + strand, within PS417_03920 at 876.027 kb on - strand, within PS417_03920 at 876.073 kb on + strand, within PS417_03920 at 876.114 kb on - strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.360 kb on + strand, within PS417_03925 at 876.361 kb on - strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.549 kb on - strand, within PS417_03925 at 876.594 kb on - strand, within PS417_03925 at 877.071 kb on - strand at 877.110 kb on + strand at 877.110 kb on + strand at 877.160 kb on - strand at 877.304 kb on - strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.617 kb on - strand, within PS417_03930 at 877.830 kb on + strand, within PS417_03930
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 875,210 + PS417_03910 0.74 +0.1 875,318 + PS417_03910 0.82 +0.0 875,319 - PS417_03910 0.82 +0.6 875,319 - PS417_03910 0.82 +0.3 875,372 - PS417_03910 0.86 -0.1 875,372 - PS417_03910 0.86 +0.2 875,505 + -0.4 875,604 + -0.3 875,604 + +0.3 875,627 - PS417_03915 0.11 -1.1 875,627 - PS417_03915 0.11 -0.1 875,627 - PS417_03915 0.11 -0.4 875,711 - +0.1 875,780 - +0.1 875,826 - +0.0 875,892 - PS417_03920 0.18 +0.6 876,000 - PS417_03920 0.53 -1.8 876,026 + PS417_03920 0.62 -0.6 876,026 + PS417_03920 0.62 +0.3 876,027 - PS417_03920 0.62 +0.5 876,073 + PS417_03920 0.77 -0.8 876,114 - +0.3 876,257 + -0.5 876,257 + +0.4 876,257 + -0.9 876,258 - -0.8 876,258 - +0.2 876,258 - -0.2 876,258 - -0.5 876,360 + PS417_03925 0.20 +0.1 876,361 - PS417_03925 0.20 -0.3 876,548 + PS417_03925 0.42 +0.4 876,548 + PS417_03925 0.42 +0.2 876,549 - PS417_03925 0.42 -0.1 876,594 - PS417_03925 0.48 -0.5 877,071 - +0.5 877,110 + +0.5 877,110 + +0.8 877,160 - -1.8 877,304 - +0.3 877,430 + -0.3 877,430 + +0.3 877,430 + -0.1 877,430 + -1.1 877,617 - PS417_03930 0.18 -0.6 877,830 + PS417_03930 0.28 -0.4
Or see this region's nucleotide sequence