Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0055 and Echvi_0056 are separated by 3 nucleotides Echvi_0056 and Echvi_0057 are separated by 86 nucleotides Echvi_0057 and Echvi_0058 are separated by 53 nucleotides
Echvi_0055: Echvi_0055 - Predicted Zn-dependent peptidases, at 51,567 to 52,796
_0055
Echvi_0056: Echvi_0056 - Predicted O-methyltransferase, at 52,800 to 53,444
_0056
Echvi_0057: Echvi_0057 - FOG: LysM repeat, at 53,531 to 55,102
_0057
Echvi_0058: Echvi_0058 - Protein of unknown function (DUF3078)., at 55,156 to 56,148
_0058
Position (kb)
53
54
55
56 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 52.575 kb on - strand, within Echvi_0055 at 52.642 kb on + strand, within Echvi_0055 at 52.739 kb on - strand at 52.770 kb on - strand at 52.807 kb on + strand at 52.823 kb on - strand at 52.823 kb on - strand at 52.823 kb on - strand at 52.825 kb on + strand at 52.825 kb on + strand at 52.826 kb on - strand at 52.826 kb on - strand at 52.831 kb on - strand at 52.831 kb on - strand at 52.831 kb on - strand at 52.901 kb on - strand, within Echvi_0056 at 52.990 kb on + strand, within Echvi_0056 at 52.998 kb on + strand, within Echvi_0056 at 52.999 kb on - strand, within Echvi_0056 at 53.008 kb on - strand, within Echvi_0056 at 53.021 kb on + strand, within Echvi_0056 at 53.057 kb on + strand, within Echvi_0056 at 53.136 kb on + strand, within Echvi_0056 at 53.136 kb on + strand, within Echvi_0056 at 53.136 kb on + strand, within Echvi_0056 at 53.136 kb on + strand, within Echvi_0056 at 53.137 kb on - strand, within Echvi_0056 at 53.137 kb on - strand, within Echvi_0056 at 53.137 kb on - strand, within Echvi_0056 at 53.137 kb on - strand, within Echvi_0056 at 53.139 kb on - strand, within Echvi_0056 at 53.287 kb on + strand, within Echvi_0056 at 53.287 kb on + strand, within Echvi_0056 at 53.287 kb on + strand, within Echvi_0056 at 53.287 kb on + strand, within Echvi_0056 at 53.288 kb on - strand, within Echvi_0056 at 53.401 kb on + strand at 53.401 kb on + strand at 53.469 kb on - strand at 53.558 kb on + strand at 53.558 kb on + strand at 53.558 kb on + strand at 53.558 kb on + strand at 53.559 kb on - strand at 53.560 kb on + strand at 53.560 kb on + strand at 53.723 kb on + strand, within Echvi_0057 at 53.723 kb on + strand, within Echvi_0057 at 53.756 kb on + strand, within Echvi_0057 at 53.756 kb on + strand, within Echvi_0057 at 53.756 kb on + strand, within Echvi_0057 at 53.757 kb on - strand, within Echvi_0057 at 53.757 kb on - strand, within Echvi_0057 at 53.759 kb on - strand, within Echvi_0057 at 53.759 kb on - strand, within Echvi_0057 at 53.809 kb on + strand, within Echvi_0057 at 53.809 kb on + strand, within Echvi_0057 at 53.809 kb on + strand, within Echvi_0057 at 53.810 kb on - strand, within Echvi_0057 at 53.810 kb on - strand, within Echvi_0057 at 53.810 kb on - strand, within Echvi_0057 at 53.979 kb on + strand, within Echvi_0057 at 53.979 kb on + strand, within Echvi_0057 at 53.979 kb on + strand, within Echvi_0057 at 53.982 kb on - strand, within Echvi_0057 at 53.982 kb on - strand, within Echvi_0057 at 54.081 kb on - strand, within Echvi_0057 at 54.107 kb on - strand, within Echvi_0057 at 54.125 kb on + strand, within Echvi_0057 at 54.126 kb on - strand, within Echvi_0057 at 54.126 kb on - strand, within Echvi_0057 at 54.274 kb on - strand, within Echvi_0057 at 54.327 kb on - strand, within Echvi_0057 at 54.327 kb on - strand, within Echvi_0057 at 54.338 kb on + strand, within Echvi_0057 at 54.388 kb on + strand, within Echvi_0057 at 54.388 kb on + strand, within Echvi_0057 at 54.403 kb on - strand, within Echvi_0057 at 54.556 kb on + strand, within Echvi_0057 at 54.556 kb on + strand, within Echvi_0057 at 54.597 kb on + strand, within Echvi_0057 at 54.630 kb on - strand, within Echvi_0057 at 54.632 kb on + strand, within Echvi_0057 at 54.632 kb on + strand, within Echvi_0057 at 54.632 kb on + strand, within Echvi_0057 at 54.632 kb on + strand, within Echvi_0057 at 54.633 kb on - strand, within Echvi_0057 at 54.633 kb on - strand, within Echvi_0057 at 54.633 kb on - strand, within Echvi_0057 at 54.636 kb on - strand, within Echvi_0057 at 54.671 kb on + strand, within Echvi_0057 at 54.719 kb on + strand, within Echvi_0057 at 54.720 kb on - strand, within Echvi_0057 at 54.760 kb on - strand, within Echvi_0057 at 54.761 kb on + strand, within Echvi_0057 at 54.762 kb on - strand, within Echvi_0057 at 54.809 kb on + strand, within Echvi_0057 at 54.810 kb on - strand, within Echvi_0057 at 54.810 kb on - strand, within Echvi_0057 at 54.814 kb on + strand, within Echvi_0057 at 54.814 kb on + strand, within Echvi_0057 at 54.846 kb on + strand, within Echvi_0057 at 54.846 kb on + strand, within Echvi_0057 at 54.846 kb on + strand, within Echvi_0057 at 54.865 kb on + strand, within Echvi_0057 at 54.964 kb on + strand at 54.964 kb on + strand at 54.964 kb on + strand at 54.964 kb on + strand at 54.965 kb on - strand at 54.965 kb on - strand at 54.965 kb on - strand at 54.989 kb on + strand at 55.084 kb on - strand at 55.084 kb on - strand at 55.118 kb on + strand at 55.119 kb on - strand at 55.119 kb on - strand at 55.123 kb on + strand at 55.123 kb on + strand at 55.136 kb on + strand at 55.136 kb on + strand at 55.136 kb on + strand at 55.170 kb on + strand at 55.170 kb on + strand at 55.187 kb on + strand at 55.257 kb on + strand, within Echvi_0058 at 55.269 kb on + strand, within Echvi_0058 at 55.270 kb on - strand, within Echvi_0058 at 55.300 kb on - strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.313 kb on + strand, within Echvi_0058 at 55.314 kb on - strand, within Echvi_0058 at 55.321 kb on - strand, within Echvi_0058 at 55.345 kb on + strand, within Echvi_0058 at 55.368 kb on - strand, within Echvi_0058 at 55.431 kb on - strand, within Echvi_0058 at 55.442 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.517 kb on - strand, within Echvi_0058 at 55.589 kb on - strand, within Echvi_0058 at 55.635 kb on + strand, within Echvi_0058 at 55.636 kb on - strand, within Echvi_0058 at 55.640 kb on - strand, within Echvi_0058 at 55.732 kb on + strand, within Echvi_0058 at 55.755 kb on + strand, within Echvi_0058 at 55.767 kb on + strand, within Echvi_0058 at 55.772 kb on + strand, within Echvi_0058 at 55.860 kb on - strand, within Echvi_0058 at 55.887 kb on + strand, within Echvi_0058 at 55.887 kb on + strand, within Echvi_0058 at 55.991 kb on - strand, within Echvi_0058 at 56.013 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.017 kb on + strand, within Echvi_0058 at 56.018 kb on - strand, within Echvi_0058 at 56.018 kb on - strand, within Echvi_0058 at 56.028 kb on + strand, within Echvi_0058 at 56.102 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 52,575 - Echvi_0055 0.82 -1.1 52,642 + Echvi_0055 0.87 -0.7 52,739 - -0.1 52,770 - +0.6 52,807 + +0.1 52,823 - -1.5 52,823 - -0.2 52,823 - -1.2 52,825 + -0.2 52,825 + -0.5 52,826 - +0.9 52,826 - -0.1 52,831 - -1.6 52,831 - -0.4 52,831 - -2.2 52,901 - Echvi_0056 0.16 -1.4 52,990 + Echvi_0056 0.29 +0.3 52,998 + Echvi_0056 0.31 +0.3 52,999 - Echvi_0056 0.31 -0.3 53,008 - Echvi_0056 0.32 -0.1 53,021 + Echvi_0056 0.34 +0.7 53,057 + Echvi_0056 0.40 -1.3 53,136 + Echvi_0056 0.52 +1.1 53,136 + Echvi_0056 0.52 +0.1 53,136 + Echvi_0056 0.52 +0.8 53,136 + Echvi_0056 0.52 +0.3 53,137 - Echvi_0056 0.52 +0.1 53,137 - Echvi_0056 0.52 -0.9 53,137 - Echvi_0056 0.52 -1.0 53,137 - Echvi_0056 0.52 -0.9 53,139 - Echvi_0056 0.53 +0.7 53,287 + Echvi_0056 0.76 -0.6 53,287 + Echvi_0056 0.76 +0.1 53,287 + Echvi_0056 0.76 -2.9 53,287 + Echvi_0056 0.76 +0.9 53,288 - Echvi_0056 0.76 +1.9 53,401 + -0.5 53,401 + -0.5 53,469 - +0.4 53,558 + +0.6 53,558 + -1.1 53,558 + -0.1 53,558 + +2.5 53,559 - +0.4 53,560 + +0.3 53,560 + +0.2 53,723 + Echvi_0057 0.12 -0.2 53,723 + Echvi_0057 0.12 +0.1 53,756 + Echvi_0057 0.14 +0.7 53,756 + Echvi_0057 0.14 -0.5 53,756 + Echvi_0057 0.14 +1.1 53,757 - Echvi_0057 0.14 +0.3 53,757 - Echvi_0057 0.14 -0.0 53,759 - Echvi_0057 0.15 -1.0 53,759 - Echvi_0057 0.15 +1.1 53,809 + Echvi_0057 0.18 +0.7 53,809 + Echvi_0057 0.18 +1.8 53,809 + Echvi_0057 0.18 +0.6 53,810 - Echvi_0057 0.18 -0.8 53,810 - Echvi_0057 0.18 -0.7 53,810 - Echvi_0057 0.18 +0.8 53,979 + Echvi_0057 0.28 +0.7 53,979 + Echvi_0057 0.28 -0.3 53,979 + Echvi_0057 0.28 -0.1 53,982 - Echvi_0057 0.29 +1.7 53,982 - Echvi_0057 0.29 +0.6 54,081 - Echvi_0057 0.35 -0.2 54,107 - Echvi_0057 0.37 +0.9 54,125 + Echvi_0057 0.38 +1.6 54,126 - Echvi_0057 0.38 +0.3 54,126 - Echvi_0057 0.38 +0.4 54,274 - Echvi_0057 0.47 -2.5 54,327 - Echvi_0057 0.51 -1.4 54,327 - Echvi_0057 0.51 +1.3 54,338 + Echvi_0057 0.51 -0.2 54,388 + Echvi_0057 0.55 +2.3 54,388 + Echvi_0057 0.55 -0.1 54,403 - Echvi_0057 0.55 +1.3 54,556 + Echvi_0057 0.65 +0.5 54,556 + Echvi_0057 0.65 +0.2 54,597 + Echvi_0057 0.68 -1.8 54,630 - Echvi_0057 0.70 -2.2 54,632 + Echvi_0057 0.70 -0.2 54,632 + Echvi_0057 0.70 +2.2 54,632 + Echvi_0057 0.70 -3.2 54,632 + Echvi_0057 0.70 +1.1 54,633 - Echvi_0057 0.70 +1.6 54,633 - Echvi_0057 0.70 -1.0 54,633 - Echvi_0057 0.70 +0.9 54,636 - Echvi_0057 0.70 +0.2 54,671 + Echvi_0057 0.73 -1.3 54,719 + Echvi_0057 0.76 -1.7 54,720 - Echvi_0057 0.76 +1.1 54,760 - Echvi_0057 0.78 -0.2 54,761 + Echvi_0057 0.78 +0.3 54,762 - Echvi_0057 0.78 -0.4 54,809 + Echvi_0057 0.81 -1.4 54,810 - Echvi_0057 0.81 -1.1 54,810 - Echvi_0057 0.81 -0.4 54,814 + Echvi_0057 0.82 -1.5 54,814 + Echvi_0057 0.82 +0.2 54,846 + Echvi_0057 0.84 +1.9 54,846 + Echvi_0057 0.84 +0.6 54,846 + Echvi_0057 0.84 +0.5 54,865 + Echvi_0057 0.85 +0.1 54,964 + +1.7 54,964 + -0.4 54,964 + +0.6 54,964 + -0.7 54,965 - +0.1 54,965 - -0.1 54,965 - +0.3 54,989 + -1.0 55,084 - +0.7 55,084 - -1.3 55,118 + +0.3 55,119 - +0.7 55,119 - +0.7 55,123 + -0.8 55,123 + -0.3 55,136 + +0.1 55,136 + +1.3 55,136 + +0.8 55,170 + +0.5 55,170 + +0.7 55,187 + +0.3 55,257 + Echvi_0058 0.10 +1.1 55,269 + Echvi_0058 0.11 -1.3 55,270 - Echvi_0058 0.11 -0.0 55,300 - Echvi_0058 0.15 +1.4 55,313 + Echvi_0058 0.16 +1.9 55,313 + Echvi_0058 0.16 +0.2 55,313 + Echvi_0058 0.16 -0.4 55,313 + Echvi_0058 0.16 -0.5 55,313 + Echvi_0058 0.16 -0.6 55,314 - Echvi_0058 0.16 +0.6 55,321 - Echvi_0058 0.17 -0.2 55,345 + Echvi_0058 0.19 -1.1 55,368 - Echvi_0058 0.21 -0.4 55,431 - Echvi_0058 0.28 +0.0 55,442 - Echvi_0058 0.29 -0.7 55,517 - Echvi_0058 0.36 +0.0 55,517 - Echvi_0058 0.36 +0.6 55,517 - Echvi_0058 0.36 +0.0 55,589 - Echvi_0058 0.44 +0.3 55,635 + Echvi_0058 0.48 +0.7 55,636 - Echvi_0058 0.48 -1.7 55,640 - Echvi_0058 0.49 -0.9 55,732 + Echvi_0058 0.58 +1.9 55,755 + Echvi_0058 0.60 +0.3 55,767 + Echvi_0058 0.62 -1.5 55,772 + Echvi_0058 0.62 -0.1 55,860 - Echvi_0058 0.71 -0.4 55,887 + Echvi_0058 0.74 +1.6 55,887 + Echvi_0058 0.74 -2.8 55,991 - Echvi_0058 0.84 +0.1 56,013 + Echvi_0058 0.86 +0.2 56,017 + Echvi_0058 0.87 +0.3 56,017 + Echvi_0058 0.87 +2.3 56,017 + Echvi_0058 0.87 -0.2 56,017 + Echvi_0058 0.87 -0.4 56,018 - Echvi_0058 0.87 -0.9 56,018 - Echvi_0058 0.87 -0.4 56,028 + Echvi_0058 0.88 +0.3 56,102 + +0.1
Or see this region's nucleotide sequence