Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0044

Experiment: m.b. A22 0.04 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. A22 0.04 mg/ml
40,676	+		Echvi_0043	0.54	+0.7
40,677	-		Echvi_0043	0.54	-0.4
40,679	+		Echvi_0043	0.54	-0.2
40,680	-		Echvi_0043	0.54	+0.6
40,697	-		Echvi_0043	0.56	+0.1
40,697	-		Echvi_0043	0.56	-0.1
40,709	-		Echvi_0043	0.56	+1.9
40,918	-		Echvi_0043	0.73	+0.1
40,940	-		Echvi_0043	0.75	+0.0
40,984	-		Echvi_0043	0.79	-2.7
41,124	+		Echvi_0043	0.90	-0.7
41,125	-		Echvi_0043	0.90	-1.6
41,158	-				+3.5
41,175	+				-0.2
41,175	+				+0.3
41,264	+				-0.9
41,264	+				+0.2
41,306	+				-0.3
41,306	+				+1.6
41,307	-				-1.8
41,307	-				-2.3
41,307	-				+0.3
41,316	+				-0.1
41,317	-				+0.4
41,324	-				-0.6
41,330	+				-0.7
41,330	+				+0.7
41,330	+				+0.8
41,404	+				-1.2
41,404	+				+1.1
41,405	-				+0.3
41,405	-				+1.1
41,405	-				+0.3
41,405	-				-1.4
41,428	-				+0.0
41,522	-				-0.6
41,522	-				-1.9
41,522	-				+0.9
41,541	+				+0.6
41,553	+				-0.7
41,553	+				+0.1
41,559	-				+0.5
41,559	-				+0.9
41,642	+				-0.9
41,796	+		Echvi_0044	0.23	-0.9
41,797	-		Echvi_0044	0.23	-1.4
41,800	+		Echvi_0044	0.23	-0.7
41,801	-		Echvi_0044	0.23	-1.1
41,926	+		Echvi_0044	0.35	+0.3
41,937	+		Echvi_0044	0.36	-0.7
42,282	+		Echvi_0044	0.70	+1.3
42,289	+		Echvi_0044	0.70	-1.5
42,545	-				-0.5
42,593	-				-0.1
42,593	-				+0.3
42,593	-				-1.4
42,595	-				+0.1
42,595	-				+1.5
42,623	-				+0.8
42,713	-				+0.0
42,715	+				+0.1
42,717	+				-0.1
42,717	+				-0.1
42,718	-				+0.3
42,718	-				+1.9
42,718	-				+0.2
42,740	-				-1.1
42,775	+				+0.6
42,775	+				-0.2
42,778	-				-0.9
42,791	+				-0.3
42,829	+				+0.5
42,858	+		Echvi_0045	0.10	+0.7
42,858	+		Echvi_0045	0.10	-1.3
42,960	-		Echvi_0045	0.23	+1.7
43,005	-		Echvi_0045	0.29	+0.4
43,020	-		Echvi_0045	0.31	-0.5
43,020	-		Echvi_0045	0.31	-0.2
43,023	+		Echvi_0045	0.31	-0.1
43,024	-		Echvi_0045	0.31	+0.1
43,140	+		Echvi_0045	0.46	-0.9
43,191	-		Echvi_0045	0.52	-1.2
43,234	-		Echvi_0045	0.58	-2.2
43,252	+		Echvi_0045	0.60	-0.1
43,253	-		Echvi_0045	0.60	-1.4
43,253	-		Echvi_0045	0.60	+0.3
43,255	-		Echvi_0045	0.60	+0.1
43,255	-		Echvi_0045	0.60	+0.7
43,294	-		Echvi_0045	0.65	+0.2
43,306	-		Echvi_0045	0.67	+0.4
43,330	+		Echvi_0045	0.70	-0.5
43,330	+		Echvi_0045	0.70	+0.7
43,330	+		Echvi_0045	0.70	-1.8
43,331	-		Echvi_0045	0.70	-0.2
43,331	-		Echvi_0045	0.70	-0.7
43,348	+		Echvi_0045	0.72	+0.9
43,430	+		Echvi_0045	0.83	+0.1
43,431	-		Echvi_0045	0.83	-0.0
43,449	+		Echvi_0045	0.85	-1.3
43,450	-		Echvi_0045	0.85	+0.9
43,452	+		Echvi_0045	0.85	-0.2
43,453	-		Echvi_0045	0.86	-0.2
43,453	-		Echvi_0045	0.86	+0.7
43,525	-				-0.2
43,565	-				+0.1