Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0039 and Echvi_0040 are separated by 80 nucleotides Echvi_0040 and Echvi_0041 overlap by 56 nucleotides Echvi_0041 and Echvi_0042 are separated by 123 nucleotides Echvi_0042 and Echvi_0043 are separated by 129 nucleotides
Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831
_0039
Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079
_0040
Echvi_0041: Echvi_0041 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 38,024 to 38,701
_0041
Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874
_0042
Echvi_0043: Echvi_0043 - ABC-type antimicrobial peptide transport system, permease component, at 40,004 to 41,251
_0043
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 37.840 kb on + strand at 37.892 kb on + strand at 37.895 kb on - strand at 38.702 kb on - strand at 38.741 kb on + strand at 38.764 kb on + strand at 38.765 kb on - strand at 38.784 kb on + strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.787 kb on - strand at 38.787 kb on - strand at 38.789 kb on - strand at 39.879 kb on - strand at 40.048 kb on - strand at 40.133 kb on - strand, within Echvi_0043 at 40.141 kb on - strand, within Echvi_0043 at 40.254 kb on - strand, within Echvi_0043 at 40.254 kb on - strand, within Echvi_0043 at 40.277 kb on + strand, within Echvi_0043 at 40.277 kb on + strand, within Echvi_0043 at 40.278 kb on - strand, within Echvi_0043 at 40.278 kb on - strand, within Echvi_0043 at 40.327 kb on + strand, within Echvi_0043 at 40.328 kb on - strand, within Echvi_0043 at 40.405 kb on - strand, within Echvi_0043 at 40.405 kb on - strand, within Echvi_0043 at 40.414 kb on + strand, within Echvi_0043 at 40.424 kb on + strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.428 kb on - strand, within Echvi_0043 at 40.676 kb on + strand, within Echvi_0043 at 40.677 kb on - strand, within Echvi_0043 at 40.679 kb on + strand, within Echvi_0043 at 40.680 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.709 kb on - strand, within Echvi_0043
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 37,840 + -0.5 37,892 + +0.3 37,895 - -0.3 38,702 - +0.3 38,741 + +0.2 38,764 + -1.0 38,765 - -1.4 38,784 + -1.2 38,785 - +0.3 38,785 - -0.5 38,785 - -1.5 38,785 - -0.7 38,785 - -0.5 38,786 + -1.7 38,786 + -1.1 38,786 + -0.5 38,787 - -1.9 38,787 - +2.9 38,789 - -0.5 39,879 - +0.2 40,048 - -0.7 40,133 - Echvi_0043 0.10 -0.4 40,141 - Echvi_0043 0.11 -0.8 40,254 - Echvi_0043 0.20 -1.4 40,254 - Echvi_0043 0.20 +0.9 40,277 + Echvi_0043 0.22 -1.0 40,277 + Echvi_0043 0.22 +0.5 40,278 - Echvi_0043 0.22 +0.1 40,278 - Echvi_0043 0.22 +0.8 40,327 + Echvi_0043 0.26 -0.4 40,328 - Echvi_0043 0.26 -1.1 40,405 - Echvi_0043 0.32 +0.0 40,405 - Echvi_0043 0.32 +0.8 40,414 + Echvi_0043 0.33 -0.7 40,424 + Echvi_0043 0.34 -0.1 40,425 - Echvi_0043 0.34 +0.4 40,425 - Echvi_0043 0.34 +0.4 40,425 - Echvi_0043 0.34 -1.0 40,428 - Echvi_0043 0.34 +0.4 40,676 + Echvi_0043 0.54 +0.7 40,677 - Echvi_0043 0.54 -0.4 40,679 + Echvi_0043 0.54 -0.2 40,680 - Echvi_0043 0.54 +0.6 40,697 - Echvi_0043 0.56 +0.1 40,697 - Echvi_0043 0.56 -0.1 40,709 - Echvi_0043 0.56 +1.9
Or see this region's nucleotide sequence