Strain Fitness in Escherichia coli BW25113 around b0930

Experiment: Tetracycline 0.0008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntompF and asnS are separated by 602 nucleotidesasnS and pncB are separated by 168 nucleotides b0929: ompF - outer membrane porin 1a (Ia;b;F) (NCBI), at 985,117 to 986,205 ompF b0930: asnS - asparaginyl-tRNA synthetase (NCBI), at 986,808 to 988,208 asnS b0931: pncB - nicotinate phosphoribosyltransferase (NCBI), at 988,377 to 989,579 pncB Position (kb) 986 987 988 989Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 985.813 kb on - strand, within ompFat 985.880 kb on - strand, within ompFat 985.934 kb on + strand, within ompFat 985.934 kb on + strand, within ompFat 986.017 kb on + strand, within ompFat 986.017 kb on + strand, within ompFat 986.164 kb on - strandat 986.164 kb on - strandat 986.179 kb on - strandat 986.217 kb on - strandat 986.217 kb on - strandat 986.445 kb on - strandat 988.280 kb on - strandat 988.301 kb on + strandat 988.411 kb on + strandat 988.419 kb on - strandat 988.419 kb on - strandat 988.494 kb on + strandat 988.500 kb on - strand, within pncBat 988.654 kb on + strandat 988.670 kb on - strand, within pncBat 988.752 kb on - strand, within pncBat 988.752 kb on - strand, within pncBat 988.819 kb on + strand, within pncBat 988.819 kb on + strand, within pncBat 988.883 kb on + strand, within pncBat 989.105 kb on - strand, within pncBat 989.105 kb on - strand, within pncBat 989.167 kb on + strand, within pncB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0008 mg/ml
remove
985,813 - ompF b0929 0.64 +1.1
985,880 - ompF b0929 0.70 +4.8
985,934 + ompF b0929 0.75 +4.4
985,934 + ompF b0929 0.75 +4.5
986,017 + ompF b0929 0.83 +3.9
986,017 + ompF b0929 0.83 +3.1
986,164 - +4.8
986,164 - +5.4
986,179 - +4.2
986,217 - +2.1
986,217 - +0.9
986,445 - -0.4
988,280 - -0.2
988,301 + -0.9
988,411 + -1.7
988,419 - -0.2
988,419 - +0.4
988,494 + -0.2
988,500 - pncB b0931 0.10 -0.8
988,654 + +2.4
988,670 - pncB b0931 0.24 -0.8
988,752 - pncB b0931 0.31 -0.1
988,752 - pncB b0931 0.31 +0.0
988,819 + pncB b0931 0.37 +0.4
988,819 + pncB b0931 0.37 +0.5
988,883 + pncB b0931 0.42 +0.8
989,105 - pncB b0931 0.61 -1.0
989,105 - pncB b0931 0.61 +0.2
989,167 + pncB b0931 0.66 -1.6

Or see this region's nucleotide sequence