Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20905 and PS417_20910 are separated by 226 nucleotides PS417_20910 and PS417_20915 are separated by 37 nucleotides PS417_20915 and PS417_20920 are separated by 238 nucleotides
PS417_20905: PS417_20905 - GntR family transcriptional regulator, at 4,545,475 to 4,546,239
_20905
PS417_20910: PS417_20910 - membrane protein, at 4,546,466 to 4,547,656
_20910
PS417_20915: PS417_20915 - hypothetical protein, at 4,547,694 to 4,548,038
_20915
PS417_20920: PS417_20920 - D-alanyl-D-alanine carboxypeptidase, at 4,548,277 to 4,549,737
_20920
Position (kb) 4546
4547
4548 Strain fitness (log2 ratio) -1
0
1
2 at 4545.476 kb on + strand at 4545.476 kb on + strand at 4545.476 kb on + strand at 4545.476 kb on + strand at 4545.477 kb on - strand at 4545.586 kb on - strand, within PS417_20905 at 4546.278 kb on - strand at 4546.281 kb on - strand at 4546.307 kb on - strand at 4546.307 kb on - strand at 4546.332 kb on - strand at 4546.382 kb on + strand at 4546.398 kb on + strand at 4546.410 kb on + strand at 4546.781 kb on + strand, within PS417_20910 at 4546.781 kb on + strand, within PS417_20910 at 4546.781 kb on + strand, within PS417_20910 at 4546.781 kb on + strand, within PS417_20910 at 4546.781 kb on + strand, within PS417_20910 at 4546.782 kb on - strand, within PS417_20910 at 4546.782 kb on - strand, within PS417_20910 at 4546.782 kb on - strand, within PS417_20910 at 4546.782 kb on - strand, within PS417_20910 at 4546.782 kb on - strand, within PS417_20910 at 4546.782 kb on - strand, within PS417_20910 at 4546.965 kb on - strand, within PS417_20910 at 4546.994 kb on + strand, within PS417_20910 at 4546.994 kb on + strand, within PS417_20910 at 4547.355 kb on - strand, within PS417_20910 at 4547.655 kb on - strand at 4547.685 kb on + strand at 4547.689 kb on + strand at 4547.690 kb on - strand at 4547.690 kb on - strand at 4547.692 kb on + strand at 4547.693 kb on - strand at 4547.699 kb on + strand at 4547.852 kb on - strand, within PS417_20915 at 4547.869 kb on + strand, within PS417_20915 at 4547.870 kb on - strand, within PS417_20915 at 4548.053 kb on + strand at 4548.054 kb on - strand at 4548.058 kb on - strand at 4548.058 kb on - strand at 4548.076 kb on - strand at 4548.076 kb on - strand at 4548.076 kb on - strand at 4548.177 kb on - strand at 4548.227 kb on - strand at 4548.269 kb on + strand at 4548.276 kb on + strand at 4548.276 kb on + strand at 4548.277 kb on - strand at 4548.521 kb on - strand, within PS417_20920 at 4548.571 kb on + strand, within PS417_20920 at 4548.572 kb on - strand, within PS417_20920
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,545,476 + -0.5 4,545,476 + +0.2 4,545,476 + -0.0 4,545,476 + +1.0 4,545,477 - +0.2 4,545,586 - PS417_20905 0.15 -1.6 4,546,278 - +0.5 4,546,281 - -0.5 4,546,307 - +0.1 4,546,307 - -0.2 4,546,332 - -0.0 4,546,382 + +0.8 4,546,398 + -0.9 4,546,410 + +2.2 4,546,781 + PS417_20910 0.26 -1.1 4,546,781 + PS417_20910 0.26 -0.9 4,546,781 + PS417_20910 0.26 +0.2 4,546,781 + PS417_20910 0.26 +0.5 4,546,781 + PS417_20910 0.26 -0.2 4,546,782 - PS417_20910 0.27 +0.2 4,546,782 - PS417_20910 0.27 +0.2 4,546,782 - PS417_20910 0.27 -0.4 4,546,782 - PS417_20910 0.27 +0.4 4,546,782 - PS417_20910 0.27 -0.5 4,546,782 - PS417_20910 0.27 -0.1 4,546,965 - PS417_20910 0.42 +1.5 4,546,994 + PS417_20910 0.44 -0.4 4,546,994 + PS417_20910 0.44 +0.5 4,547,355 - PS417_20910 0.75 +0.3 4,547,655 - -0.5 4,547,685 + +0.2 4,547,689 + -0.4 4,547,690 - +0.6 4,547,690 - -0.1 4,547,692 + +0.6 4,547,693 - +0.5 4,547,699 + -0.1 4,547,852 - PS417_20915 0.46 -0.1 4,547,869 + PS417_20915 0.51 +0.1 4,547,870 - PS417_20915 0.51 -1.2 4,548,053 + +0.2 4,548,054 - -0.7 4,548,058 - -0.5 4,548,058 - +0.2 4,548,076 - +0.4 4,548,076 - +0.0 4,548,076 - +0.2 4,548,177 - +1.0 4,548,227 - -0.2 4,548,269 + +2.0 4,548,276 + +0.8 4,548,276 + +0.2 4,548,277 - -0.0 4,548,521 - PS417_20920 0.17 +0.8 4,548,571 + PS417_20920 0.20 -0.7 4,548,572 - PS417_20920 0.20 -0.1
Or see this region's nucleotide sequence