Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19125 and PS417_19130 are separated by 101 nucleotides PS417_19130 and PS417_19135 are separated by 484 nucleotides
PS417_19125: PS417_19125 - LysR family transcriptional regulator, at 4,130,648 to 4,131,544
_19125
PS417_19130: PS417_19130 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) <small>(from data)</small>, at 4,131,646 to 4,132,776
_19130
PS417_19135: PS417_19135 - DeoR faimly transcriptional regulator, at 4,133,261 to 4,134,187
_19135
Position (kb) 4131
4132
4133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4130.811 kb on + strand, within PS417_19125 at 4131.013 kb on + strand, within PS417_19125 at 4131.014 kb on - strand, within PS417_19125 at 4131.207 kb on + strand, within PS417_19125 at 4131.207 kb on + strand, within PS417_19125 at 4131.644 kb on + strand at 4131.644 kb on + strand at 4131.652 kb on - strand at 4131.652 kb on - strand at 4131.652 kb on - strand at 4131.895 kb on + strand, within PS417_19130 at 4131.895 kb on + strand, within PS417_19130 at 4131.895 kb on + strand, within PS417_19130 at 4131.895 kb on + strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4131.896 kb on - strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.030 kb on + strand, within PS417_19130 at 4132.031 kb on - strand, within PS417_19130 at 4132.031 kb on - strand, within PS417_19130 at 4132.031 kb on - strand, within PS417_19130 at 4132.104 kb on - strand, within PS417_19130 at 4132.104 kb on - strand, within PS417_19130 at 4132.107 kb on + strand, within PS417_19130 at 4132.263 kb on + strand, within PS417_19130 at 4132.264 kb on - strand, within PS417_19130 at 4132.303 kb on + strand, within PS417_19130 at 4132.304 kb on - strand, within PS417_19130 at 4132.304 kb on - strand, within PS417_19130 at 4132.402 kb on - strand, within PS417_19130 at 4132.592 kb on + strand, within PS417_19130 at 4132.593 kb on - strand, within PS417_19130 at 4132.645 kb on + strand, within PS417_19130 at 4132.645 kb on + strand, within PS417_19130 at 4132.885 kb on + strand at 4132.890 kb on + strand at 4132.891 kb on - strand at 4132.918 kb on - strand at 4132.918 kb on - strand at 4132.975 kb on + strand at 4133.135 kb on - strand at 4133.162 kb on + strand at 4133.163 kb on - strand at 4133.167 kb on - strand at 4133.167 kb on - strand at 4133.174 kb on - strand at 4133.246 kb on - strand at 4133.246 kb on - strand at 4133.544 kb on - strand, within PS417_19135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,130,811 + PS417_19125 0.18 -0.3 4,131,013 + PS417_19125 0.41 -1.3 4,131,014 - PS417_19125 0.41 -0.0 4,131,207 + PS417_19125 0.62 -1.5 4,131,207 + PS417_19125 0.62 -1.0 4,131,644 + -0.6 4,131,644 + +0.8 4,131,652 - +0.3 4,131,652 - -0.1 4,131,652 - +0.5 4,131,895 + PS417_19130 0.22 -1.8 4,131,895 + PS417_19130 0.22 -0.3 4,131,895 + PS417_19130 0.22 +0.7 4,131,895 + PS417_19130 0.22 +0.3 4,131,896 - PS417_19130 0.22 +0.4 4,131,896 - PS417_19130 0.22 -2.0 4,131,896 - PS417_19130 0.22 +0.0 4,131,896 - PS417_19130 0.22 +0.0 4,131,896 - PS417_19130 0.22 +0.3 4,131,896 - PS417_19130 0.22 +0.3 4,132,030 + PS417_19130 0.34 -0.3 4,132,030 + PS417_19130 0.34 +0.1 4,132,030 + PS417_19130 0.34 +0.6 4,132,030 + PS417_19130 0.34 +0.9 4,132,031 - PS417_19130 0.34 +0.3 4,132,031 - PS417_19130 0.34 -0.0 4,132,031 - PS417_19130 0.34 +0.2 4,132,104 - PS417_19130 0.40 +0.1 4,132,104 - PS417_19130 0.40 +0.1 4,132,107 + PS417_19130 0.41 +0.5 4,132,263 + PS417_19130 0.55 -0.4 4,132,264 - PS417_19130 0.55 +0.6 4,132,303 + PS417_19130 0.58 +0.2 4,132,304 - PS417_19130 0.58 +0.5 4,132,304 - PS417_19130 0.58 +0.1 4,132,402 - PS417_19130 0.67 +2.4 4,132,592 + PS417_19130 0.84 +0.5 4,132,593 - PS417_19130 0.84 +0.1 4,132,645 + PS417_19130 0.88 +0.3 4,132,645 + PS417_19130 0.88 +0.5 4,132,885 + -0.0 4,132,890 + -1.5 4,132,891 - -0.3 4,132,918 - -2.8 4,132,918 - -0.3 4,132,975 + +0.0 4,133,135 - -1.5 4,133,162 + +0.2 4,133,163 - -0.0 4,133,167 - +0.5 4,133,167 - -0.8 4,133,174 - +0.7 4,133,246 - +0.0 4,133,246 - +0.3 4,133,544 - PS417_19135 0.31 -0.5
Or see this region's nucleotide sequence