Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18845 and PS417_18850 are separated by 73 nucleotides PS417_18850 and PS417_18855 are separated by 46 nucleotides PS417_18855 and PS417_18860 are separated by 164 nucleotides PS417_18860 and PS417_18865 are separated by 82 nucleotides
PS417_18845: PS417_18845 - peptidase, at 4,084,715 to 4,085,242
_18845
PS417_18850: PS417_18850 - hypothetical protein, at 4,085,316 to 4,085,780
_18850
PS417_18855: PS417_18855 - peptidase, at 4,085,827 to 4,086,366
_18855
PS417_18860: PS417_18860 - transcriptional regulator, at 4,086,531 to 4,086,914
_18860
PS417_18865: PS417_18865 - hypothetical protein, at 4,086,997 to 4,087,647
_18865
Position (kb) 4085
4086
4087 Strain fitness (log2 ratio) -1
0
1
2 at 4084.977 kb on + strand at 4084.978 kb on - strand, within PS417_18845 at 4085.069 kb on - strand, within PS417_18845 at 4085.237 kb on + strand at 4085.237 kb on + strand at 4085.238 kb on - strand at 4085.238 kb on - strand at 4085.238 kb on - strand at 4085.238 kb on - strand at 4085.238 kb on - strand at 4085.358 kb on + strand at 4085.358 kb on + strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.359 kb on - strand at 4085.416 kb on + strand, within PS417_18850 at 4085.424 kb on + strand, within PS417_18850 at 4085.425 kb on - strand at 4085.549 kb on - strand, within PS417_18850 at 4085.576 kb on + strand, within PS417_18850 at 4085.820 kb on + strand at 4086.053 kb on + strand, within PS417_18855 at 4086.089 kb on + strand, within PS417_18855 at 4086.089 kb on + strand, within PS417_18855 at 4086.089 kb on + strand, within PS417_18855 at 4086.090 kb on - strand, within PS417_18855 at 4086.219 kb on + strand, within PS417_18855 at 4086.220 kb on - strand at 4086.220 kb on - strand, within PS417_18855 at 4086.299 kb on + strand, within PS417_18855 at 4086.299 kb on + strand, within PS417_18855 at 4086.299 kb on + strand, within PS417_18855 at 4086.299 kb on + strand, within PS417_18855 at 4086.300 kb on - strand, within PS417_18855 at 4086.346 kb on - strand at 4086.346 kb on - strand at 4086.346 kb on - strand at 4086.350 kb on - strand at 4086.452 kb on - strand at 4086.456 kb on - strand at 4086.486 kb on - strand at 4086.493 kb on - strand at 4086.493 kb on - strand at 4086.638 kb on - strand, within PS417_18860 at 4086.638 kb on - strand, within PS417_18860 at 4086.658 kb on - strand, within PS417_18860 at 4086.658 kb on - strand, within PS417_18860 at 4086.658 kb on - strand at 4086.658 kb on - strand, within PS417_18860 at 4086.658 kb on - strand, within PS417_18860 at 4086.680 kb on + strand, within PS417_18860 at 4086.839 kb on - strand, within PS417_18860 at 4086.913 kb on - strand at 4087.062 kb on + strand, within PS417_18865 at 4087.114 kb on + strand, within PS417_18865 at 4087.115 kb on - strand, within PS417_18865 at 4087.210 kb on + strand, within PS417_18865 at 4087.210 kb on + strand, within PS417_18865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,084,977 + +1.6 4,084,978 - PS417_18845 0.50 +0.4 4,085,069 - PS417_18845 0.67 +1.0 4,085,237 + -0.9 4,085,237 + +0.4 4,085,238 - -1.1 4,085,238 - +0.6 4,085,238 - -0.2 4,085,238 - -0.2 4,085,238 - -0.6 4,085,358 + -0.5 4,085,358 + +0.0 4,085,359 - +2.2 4,085,359 - +0.4 4,085,359 - +0.4 4,085,359 - -0.4 4,085,359 - -0.8 4,085,359 - +0.0 4,085,359 - -0.3 4,085,359 - -0.4 4,085,416 + PS417_18850 0.22 +0.1 4,085,424 + PS417_18850 0.23 -0.1 4,085,425 - -0.6 4,085,549 - PS417_18850 0.50 -0.4 4,085,576 + PS417_18850 0.56 -0.7 4,085,820 + +0.3 4,086,053 + PS417_18855 0.42 +0.2 4,086,089 + PS417_18855 0.49 +0.6 4,086,089 + PS417_18855 0.49 -0.1 4,086,089 + PS417_18855 0.49 +0.4 4,086,090 - PS417_18855 0.49 +0.6 4,086,219 + PS417_18855 0.73 +0.0 4,086,220 - -0.6 4,086,220 - PS417_18855 0.73 +0.4 4,086,299 + PS417_18855 0.87 +0.5 4,086,299 + PS417_18855 0.87 -0.0 4,086,299 + PS417_18855 0.87 +2.0 4,086,299 + PS417_18855 0.87 +0.2 4,086,300 - PS417_18855 0.88 +0.6 4,086,346 - -0.0 4,086,346 - +0.4 4,086,346 - -0.3 4,086,350 - +0.6 4,086,452 - -0.5 4,086,456 - -0.5 4,086,486 - -0.2 4,086,493 - -1.0 4,086,493 - -0.4 4,086,638 - PS417_18860 0.28 -0.6 4,086,638 - PS417_18860 0.28 +0.4 4,086,658 - PS417_18860 0.33 +1.3 4,086,658 - PS417_18860 0.33 -0.1 4,086,658 - -1.0 4,086,658 - PS417_18860 0.33 -0.3 4,086,658 - PS417_18860 0.33 -0.6 4,086,680 + PS417_18860 0.39 +0.1 4,086,839 - PS417_18860 0.80 +0.6 4,086,913 - +0.0 4,087,062 + PS417_18865 0.10 -0.5 4,087,114 + PS417_18865 0.18 -0.4 4,087,115 - PS417_18865 0.18 -0.1 4,087,210 + PS417_18865 0.33 +0.1 4,087,210 + PS417_18865 0.33 -0.3
Or see this region's nucleotide sequence