Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4413 and Echvi_4414 are separated by 333 nucleotides Echvi_4414 and Echvi_4415 are separated by 231 nucleotides Echvi_4415 and Echvi_4416 are separated by 62 nucleotides
Echvi_4413: Echvi_4413 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 5,277,343 to 5,279,079
_4413
Echvi_4414: Echvi_4414 - hypothetical protein, at 5,279,413 to 5,279,541
_4414
Echvi_4415: Echvi_4415 - Transcription antiterminator, at 5,279,773 to 5,280,276
_4415
Echvi_4416: Echvi_4416 - hypothetical protein, at 5,280,339 to 5,280,710
_4416
Position (kb) 5279
5280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5278.444 kb on - strand, within Echvi_4413 at 5278.534 kb on + strand, within Echvi_4413 at 5278.545 kb on + strand, within Echvi_4413 at 5278.545 kb on + strand, within Echvi_4413 at 5278.546 kb on - strand, within Echvi_4413 at 5278.546 kb on - strand, within Echvi_4413 at 5278.649 kb on + strand, within Echvi_4413 at 5278.806 kb on - strand, within Echvi_4413 at 5278.832 kb on + strand, within Echvi_4413 at 5278.833 kb on - strand, within Echvi_4413 at 5278.833 kb on - strand, within Echvi_4413 at 5278.940 kb on + strand at 5278.941 kb on - strand at 5278.992 kb on + strand at 5279.047 kb on + strand at 5279.076 kb on - strand at 5279.080 kb on - strand at 5279.110 kb on + strand at 5279.260 kb on + strand at 5279.260 kb on + strand at 5279.271 kb on + strand at 5279.277 kb on - strand at 5279.434 kb on + strand, within Echvi_4414 at 5279.552 kb on - strand at 5279.706 kb on + strand at 5279.736 kb on + strand at 5279.737 kb on - strand at 5279.737 kb on - strand at 5279.739 kb on - strand at 5279.739 kb on - strand at 5279.795 kb on - strand at 5279.803 kb on + strand at 5279.803 kb on + strand at 5279.803 kb on + strand at 5279.803 kb on + strand at 5279.804 kb on - strand at 5279.804 kb on - strand at 5279.804 kb on - strand at 5279.866 kb on + strand, within Echvi_4415 at 5279.888 kb on + strand, within Echvi_4415 at 5279.941 kb on + strand, within Echvi_4415 at 5279.943 kb on + strand, within Echvi_4415 at 5280.112 kb on - strand, within Echvi_4415 at 5280.112 kb on - strand, within Echvi_4415 at 5280.152 kb on + strand, within Echvi_4415 at 5280.201 kb on + strand, within Echvi_4415 at 5280.243 kb on + strand at 5280.307 kb on - strand at 5280.309 kb on - strand at 5280.309 kb on - strand at 5280.309 kb on - strand at 5280.352 kb on + strand at 5280.355 kb on + strand at 5280.355 kb on + strand at 5280.355 kb on + strand at 5280.529 kb on + strand, within Echvi_4416 at 5280.529 kb on + strand, within Echvi_4416
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 5,278,444 - Echvi_4413 0.63 +1.4 5,278,534 + Echvi_4413 0.69 +0.1 5,278,545 + Echvi_4413 0.69 +0.7 5,278,545 + Echvi_4413 0.69 -0.2 5,278,546 - Echvi_4413 0.69 -0.6 5,278,546 - Echvi_4413 0.69 +2.0 5,278,649 + Echvi_4413 0.75 -0.6 5,278,806 - Echvi_4413 0.84 +0.7 5,278,832 + Echvi_4413 0.86 +0.3 5,278,833 - Echvi_4413 0.86 +0.2 5,278,833 - Echvi_4413 0.86 +0.2 5,278,940 + -0.1 5,278,941 - -0.3 5,278,992 + -0.9 5,279,047 + -0.5 5,279,076 - -0.0 5,279,080 - -1.1 5,279,110 + +0.8 5,279,260 + +0.8 5,279,260 + -0.7 5,279,271 + +0.1 5,279,277 - +0.2 5,279,434 + Echvi_4414 0.16 -1.6 5,279,552 - -1.6 5,279,706 + +1.1 5,279,736 + -1.2 5,279,737 - -0.9 5,279,737 - -1.0 5,279,739 - -1.6 5,279,739 - -3.2 5,279,795 - -1.5 5,279,803 + -2.5 5,279,803 + -0.0 5,279,803 + -2.1 5,279,803 + -0.8 5,279,804 - -0.9 5,279,804 - -2.1 5,279,804 - -2.6 5,279,866 + Echvi_4415 0.18 -2.2 5,279,888 + Echvi_4415 0.23 -0.8 5,279,941 + Echvi_4415 0.33 -3.7 5,279,943 + Echvi_4415 0.34 -1.7 5,280,112 - Echvi_4415 0.67 -1.0 5,280,112 - Echvi_4415 0.67 -2.6 5,280,152 + Echvi_4415 0.75 -2.4 5,280,201 + Echvi_4415 0.85 -2.2 5,280,243 + -3.4 5,280,307 - -1.8 5,280,309 - -1.2 5,280,309 - -0.6 5,280,309 - +0.1 5,280,352 + +0.2 5,280,355 + +0.6 5,280,355 + +0.7 5,280,355 + +0.5 5,280,529 + Echvi_4416 0.51 +0.3 5,280,529 + Echvi_4416 0.51 +0.7
Or see this region's nucleotide sequence