Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4384 and Echvi_4385 are separated by 170 nucleotides Echvi_4385 and Echvi_4386 overlap by 1 nucleotides Echvi_4386 and Echvi_4387 are separated by 236 nucleotides
Echvi_4384: Echvi_4384 - Transposase and inactivated derivatives, at 5,242,055 to 5,243,608
_4384
Echvi_4385: Echvi_4385 - Transposase and inactivated derivatives, at 5,243,779 to 5,244,120
_4385
Echvi_4386: Echvi_4386 - hypothetical protein, at 5,244,120 to 5,244,407
_4386
Echvi_4387: Echvi_4387 - Predicted sugar nucleotidyltransferases, at 5,244,644 to 5,245,570
_4387
Position (kb)
5244
5245 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5244.460 kb on + strand at 5244.460 kb on + strand at 5244.467 kb on + strand at 5244.483 kb on + strand at 5244.483 kb on + strand at 5244.484 kb on - strand at 5244.642 kb on - strand at 5244.779 kb on + strand, within Echvi_4387 at 5244.834 kb on + strand, within Echvi_4387 at 5244.834 kb on + strand, within Echvi_4387 at 5244.847 kb on + strand, within Echvi_4387 at 5244.847 kb on + strand, within Echvi_4387 at 5244.850 kb on + strand, within Echvi_4387 at 5244.850 kb on + strand, within Echvi_4387 at 5245.036 kb on + strand, within Echvi_4387 at 5245.177 kb on + strand, within Echvi_4387 at 5245.177 kb on + strand, within Echvi_4387 at 5245.177 kb on + strand, within Echvi_4387 at 5245.178 kb on - strand, within Echvi_4387 at 5245.191 kb on + strand, within Echvi_4387 at 5245.229 kb on + strand, within Echvi_4387 at 5245.229 kb on + strand, within Echvi_4387 at 5245.232 kb on + strand, within Echvi_4387 at 5245.251 kb on - strand, within Echvi_4387 at 5245.251 kb on - strand, within Echvi_4387 at 5245.264 kb on + strand, within Echvi_4387 at 5245.296 kb on + strand, within Echvi_4387 at 5245.358 kb on + strand, within Echvi_4387 at 5245.358 kb on + strand, within Echvi_4387 at 5245.358 kb on + strand, within Echvi_4387 at 5245.358 kb on + strand, within Echvi_4387 at 5245.359 kb on - strand, within Echvi_4387 at 5245.359 kb on - strand, within Echvi_4387 at 5245.383 kb on - strand, within Echvi_4387 at 5245.406 kb on + strand, within Echvi_4387
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 5,244,460 + -0.4 5,244,460 + +0.3 5,244,467 + -1.9 5,244,483 + -1.7 5,244,483 + -2.5 5,244,484 - +0.5 5,244,642 - -0.3 5,244,779 + Echvi_4387 0.15 -1.2 5,244,834 + Echvi_4387 0.20 -0.0 5,244,834 + Echvi_4387 0.20 -0.5 5,244,847 + Echvi_4387 0.22 +0.7 5,244,847 + Echvi_4387 0.22 -1.1 5,244,850 + Echvi_4387 0.22 -0.5 5,244,850 + Echvi_4387 0.22 -1.7 5,245,036 + Echvi_4387 0.42 -1.5 5,245,177 + Echvi_4387 0.57 +0.2 5,245,177 + Echvi_4387 0.57 -2.8 5,245,177 + Echvi_4387 0.57 +0.1 5,245,178 - Echvi_4387 0.58 +0.0 5,245,191 + Echvi_4387 0.59 -0.4 5,245,229 + Echvi_4387 0.63 -0.4 5,245,229 + Echvi_4387 0.63 +0.3 5,245,232 + Echvi_4387 0.63 -0.5 5,245,251 - Echvi_4387 0.65 -1.7 5,245,251 - Echvi_4387 0.65 +0.2 5,245,264 + Echvi_4387 0.67 -3.0 5,245,296 + Echvi_4387 0.70 -0.6 5,245,358 + Echvi_4387 0.77 -2.6 5,245,358 + Echvi_4387 0.77 -0.8 5,245,358 + Echvi_4387 0.77 -0.6 5,245,358 + Echvi_4387 0.77 -1.3 5,245,359 - Echvi_4387 0.77 -1.8 5,245,359 - Echvi_4387 0.77 -0.5 5,245,383 - Echvi_4387 0.80 +0.1 5,245,406 + Echvi_4387 0.82 +0.2
Or see this region's nucleotide sequence