Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4329 and Echvi_4330 are separated by 46 nucleotides Echvi_4330 and Echvi_4331 are separated by 18 nucleotides
Echvi_4329: Echvi_4329 - Outer membrane receptor proteins, mostly Fe transport, at 5,174,124 to 5,176,478
_4329
Echvi_4330: Echvi_4330 - hypothetical protein, at 5,176,525 to 5,177,778
_4330
Echvi_4331: Echvi_4331 - Uncharacterized iron-regulated membrane protein, at 5,177,797 to 5,179,020
_4331
Position (kb) 5176
5177
5178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5175.536 kb on - strand, within Echvi_4329 at 5175.536 kb on - strand, within Echvi_4329 at 5175.548 kb on + strand, within Echvi_4329 at 5175.548 kb on + strand, within Echvi_4329 at 5175.625 kb on - strand, within Echvi_4329 at 5175.812 kb on + strand, within Echvi_4329 at 5175.813 kb on - strand, within Echvi_4329 at 5175.833 kb on - strand, within Echvi_4329 at 5175.953 kb on + strand, within Echvi_4329 at 5175.953 kb on + strand, within Echvi_4329 at 5176.015 kb on + strand, within Echvi_4329 at 5176.015 kb on + strand, within Echvi_4329 at 5176.159 kb on - strand, within Echvi_4329 at 5176.172 kb on + strand, within Echvi_4329 at 5176.173 kb on - strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.180 kb on + strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.181 kb on - strand, within Echvi_4329 at 5176.185 kb on + strand, within Echvi_4329 at 5176.250 kb on - strand at 5176.250 kb on - strand at 5176.260 kb on + strand at 5176.342 kb on - strand at 5176.413 kb on + strand at 5176.452 kb on + strand at 5176.453 kb on - strand at 5176.503 kb on + strand at 5176.503 kb on + strand at 5176.504 kb on - strand at 5176.504 kb on - strand at 5176.504 kb on - strand at 5176.508 kb on - strand at 5176.508 kb on - strand at 5176.509 kb on + strand at 5176.516 kb on + strand at 5176.677 kb on - strand, within Echvi_4330 at 5176.715 kb on - strand, within Echvi_4330 at 5176.715 kb on - strand, within Echvi_4330 at 5176.717 kb on - strand, within Echvi_4330 at 5176.942 kb on - strand, within Echvi_4330 at 5176.944 kb on + strand, within Echvi_4330 at 5176.944 kb on + strand, within Echvi_4330 at 5176.963 kb on - strand, within Echvi_4330 at 5176.970 kb on - strand, within Echvi_4330 at 5176.981 kb on + strand, within Echvi_4330 at 5176.982 kb on - strand, within Echvi_4330 at 5176.982 kb on - strand, within Echvi_4330 at 5176.984 kb on - strand, within Echvi_4330 at 5176.984 kb on - strand, within Echvi_4330 at 5177.128 kb on + strand, within Echvi_4330 at 5177.129 kb on - strand, within Echvi_4330 at 5177.129 kb on - strand, within Echvi_4330 at 5177.130 kb on + strand, within Echvi_4330 at 5177.130 kb on + strand, within Echvi_4330 at 5177.167 kb on + strand, within Echvi_4330 at 5177.225 kb on - strand, within Echvi_4330 at 5177.302 kb on + strand, within Echvi_4330 at 5177.303 kb on - strand, within Echvi_4330 at 5177.303 kb on - strand, within Echvi_4330 at 5177.357 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.407 kb on + strand, within Echvi_4330 at 5177.428 kb on + strand, within Echvi_4330 at 5177.431 kb on - strand, within Echvi_4330 at 5177.431 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.477 kb on - strand, within Echvi_4330 at 5177.480 kb on + strand, within Echvi_4330 at 5177.480 kb on + strand, within Echvi_4330 at 5177.481 kb on - strand, within Echvi_4330 at 5177.541 kb on + strand, within Echvi_4330 at 5177.541 kb on + strand, within Echvi_4330 at 5177.542 kb on - strand, within Echvi_4330 at 5177.546 kb on + strand, within Echvi_4330 at 5177.547 kb on - strand, within Echvi_4330 at 5177.623 kb on + strand, within Echvi_4330 at 5177.623 kb on + strand, within Echvi_4330 at 5177.623 kb on + strand, within Echvi_4330 at 5177.624 kb on - strand, within Echvi_4330 at 5177.624 kb on - strand, within Echvi_4330 at 5177.624 kb on - strand, within Echvi_4330 at 5177.639 kb on - strand, within Echvi_4330 at 5177.643 kb on + strand, within Echvi_4330 at 5177.659 kb on + strand at 5177.667 kb on + strand at 5177.772 kb on - strand at 5177.772 kb on - strand at 5177.777 kb on - strand at 5177.856 kb on - strand at 5177.866 kb on - strand at 5177.866 kb on - strand at 5177.909 kb on + strand at 5177.909 kb on + strand at 5177.910 kb on - strand at 5177.910 kb on - strand at 5177.910 kb on - strand at 5177.910 kb on - strand at 5177.938 kb on + strand, within Echvi_4331 at 5177.939 kb on - strand, within Echvi_4331 at 5178.044 kb on - strand, within Echvi_4331 at 5178.070 kb on + strand, within Echvi_4331 at 5178.130 kb on + strand, within Echvi_4331 at 5178.139 kb on + strand, within Echvi_4331 at 5178.145 kb on + strand, within Echvi_4331 at 5178.145 kb on + strand, within Echvi_4331 at 5178.152 kb on + strand, within Echvi_4331 at 5178.152 kb on + strand, within Echvi_4331 at 5178.153 kb on - strand, within Echvi_4331 at 5178.153 kb on - strand, within Echvi_4331 at 5178.287 kb on + strand, within Echvi_4331 at 5178.288 kb on - strand, within Echvi_4331 at 5178.323 kb on + strand, within Echvi_4331 at 5178.409 kb on + strand, within Echvi_4331 at 5178.410 kb on - strand, within Echvi_4331 at 5178.436 kb on + strand, within Echvi_4331 at 5178.436 kb on + strand, within Echvi_4331 at 5178.437 kb on - strand, within Echvi_4331 at 5178.480 kb on - strand, within Echvi_4331 at 5178.597 kb on - strand, within Echvi_4331 at 5178.653 kb on - strand, within Echvi_4331 at 5178.728 kb on - strand, within Echvi_4331 at 5178.742 kb on - strand, within Echvi_4331 at 5178.742 kb on - strand, within Echvi_4331 at 5178.751 kb on + strand, within Echvi_4331
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 5,175,536 - Echvi_4329 0.60 -1.6 5,175,536 - Echvi_4329 0.60 -0.1 5,175,548 + Echvi_4329 0.60 +0.7 5,175,548 + Echvi_4329 0.60 +0.8 5,175,625 - Echvi_4329 0.64 -0.3 5,175,812 + Echvi_4329 0.72 -0.1 5,175,813 - Echvi_4329 0.72 -1.4 5,175,833 - Echvi_4329 0.73 +0.9 5,175,953 + Echvi_4329 0.78 +0.8 5,175,953 + Echvi_4329 0.78 +0.9 5,176,015 + Echvi_4329 0.80 -0.3 5,176,015 + Echvi_4329 0.80 -0.9 5,176,159 - Echvi_4329 0.86 +0.3 5,176,172 + Echvi_4329 0.87 +0.7 5,176,173 - Echvi_4329 0.87 +0.2 5,176,180 + Echvi_4329 0.87 +0.2 5,176,180 + Echvi_4329 0.87 -1.1 5,176,180 + Echvi_4329 0.87 -0.2 5,176,180 + Echvi_4329 0.87 +0.0 5,176,181 - Echvi_4329 0.87 -0.4 5,176,181 - Echvi_4329 0.87 -0.9 5,176,181 - Echvi_4329 0.87 -2.0 5,176,181 - Echvi_4329 0.87 +1.2 5,176,181 - Echvi_4329 0.87 -0.1 5,176,185 + Echvi_4329 0.88 +0.5 5,176,250 - +0.4 5,176,250 - +1.0 5,176,260 + -0.5 5,176,342 - +0.2 5,176,413 + -0.2 5,176,452 + +0.5 5,176,453 - +0.4 5,176,503 + -0.5 5,176,503 + +3.2 5,176,504 - +0.9 5,176,504 - -0.1 5,176,504 - -2.1 5,176,508 - -0.2 5,176,508 - +0.3 5,176,509 + +0.1 5,176,516 + +0.4 5,176,677 - Echvi_4330 0.12 -1.1 5,176,715 - Echvi_4330 0.15 -0.7 5,176,715 - Echvi_4330 0.15 +1.0 5,176,717 - Echvi_4330 0.15 +0.4 5,176,942 - Echvi_4330 0.33 -2.1 5,176,944 + Echvi_4330 0.33 -1.6 5,176,944 + Echvi_4330 0.33 -0.3 5,176,963 - Echvi_4330 0.35 -0.0 5,176,970 - Echvi_4330 0.35 +0.4 5,176,981 + Echvi_4330 0.36 +0.9 5,176,982 - Echvi_4330 0.36 +0.4 5,176,982 - Echvi_4330 0.36 +0.7 5,176,984 - Echvi_4330 0.37 +0.6 5,176,984 - Echvi_4330 0.37 -0.1 5,177,128 + Echvi_4330 0.48 -0.4 5,177,129 - Echvi_4330 0.48 +0.1 5,177,129 - Echvi_4330 0.48 +2.5 5,177,130 + Echvi_4330 0.48 +1.2 5,177,130 + Echvi_4330 0.48 +0.9 5,177,167 + Echvi_4330 0.51 +0.4 5,177,225 - Echvi_4330 0.56 +2.9 5,177,302 + Echvi_4330 0.62 -1.2 5,177,303 - Echvi_4330 0.62 -3.2 5,177,303 - Echvi_4330 0.62 +0.2 5,177,357 + Echvi_4330 0.66 +0.8 5,177,407 + Echvi_4330 0.70 -0.1 5,177,407 + Echvi_4330 0.70 +1.1 5,177,407 + Echvi_4330 0.70 +1.5 5,177,428 + Echvi_4330 0.72 +0.5 5,177,431 - Echvi_4330 0.72 -0.3 5,177,431 - Echvi_4330 0.72 +1.3 5,177,477 - Echvi_4330 0.76 +0.4 5,177,477 - Echvi_4330 0.76 +0.5 5,177,477 - Echvi_4330 0.76 +0.4 5,177,477 - Echvi_4330 0.76 -0.4 5,177,480 + Echvi_4330 0.76 +0.3 5,177,480 + Echvi_4330 0.76 -0.1 5,177,481 - Echvi_4330 0.76 -1.1 5,177,541 + Echvi_4330 0.81 +0.3 5,177,541 + Echvi_4330 0.81 -0.4 5,177,542 - Echvi_4330 0.81 +0.1 5,177,546 + Echvi_4330 0.81 -0.4 5,177,547 - Echvi_4330 0.81 -0.6 5,177,623 + Echvi_4330 0.88 +0.4 5,177,623 + Echvi_4330 0.88 +0.9 5,177,623 + Echvi_4330 0.88 +0.1 5,177,624 - Echvi_4330 0.88 -1.2 5,177,624 - Echvi_4330 0.88 +0.9 5,177,624 - Echvi_4330 0.88 +1.0 5,177,639 - Echvi_4330 0.89 +0.8 5,177,643 + Echvi_4330 0.89 +0.4 5,177,659 + -0.4 5,177,667 + -0.2 5,177,772 - -0.7 5,177,772 - +0.5 5,177,777 - -0.4 5,177,856 - +0.9 5,177,866 - +0.0 5,177,866 - +0.1 5,177,909 + +0.4 5,177,909 + -0.4 5,177,910 - -1.3 5,177,910 - +0.1 5,177,910 - -0.9 5,177,910 - -0.8 5,177,938 + Echvi_4331 0.12 +0.5 5,177,939 - Echvi_4331 0.12 +0.9 5,178,044 - Echvi_4331 0.20 -0.6 5,178,070 + Echvi_4331 0.22 -0.2 5,178,130 + Echvi_4331 0.27 +1.1 5,178,139 + Echvi_4331 0.28 -0.1 5,178,145 + Echvi_4331 0.28 +0.9 5,178,145 + Echvi_4331 0.28 -0.5 5,178,152 + Echvi_4331 0.29 -0.2 5,178,152 + Echvi_4331 0.29 -0.2 5,178,153 - Echvi_4331 0.29 -3.1 5,178,153 - Echvi_4331 0.29 -0.0 5,178,287 + Echvi_4331 0.40 -1.5 5,178,288 - Echvi_4331 0.40 -0.8 5,178,323 + Echvi_4331 0.43 +0.9 5,178,409 + Echvi_4331 0.50 -0.5 5,178,410 - Echvi_4331 0.50 -1.0 5,178,436 + Echvi_4331 0.52 +1.6 5,178,436 + Echvi_4331 0.52 +0.4 5,178,437 - Echvi_4331 0.52 +1.4 5,178,480 - Echvi_4331 0.56 -0.2 5,178,597 - Echvi_4331 0.65 +0.4 5,178,653 - Echvi_4331 0.70 +0.9 5,178,728 - Echvi_4331 0.76 +0.3 5,178,742 - Echvi_4331 0.77 -0.3 5,178,742 - Echvi_4331 0.77 +0.4 5,178,751 + Echvi_4331 0.78 +0.9
Or see this region's nucleotide sequence