Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4290

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4285 and Echvi_4289 are separated by 22 nucleotidesEchvi_4289 and Echvi_4290 are separated by 121 nucleotidesEchvi_4290 and Echvi_4291 are separated by 4 nucleotidesEchvi_4291 and Echvi_4292 are separated by 66 nucleotides Echvi_4285: Echvi_4285 - hypothetical protein, at 5,130,458 to 5,133,657 _4285 Echvi_4289: Echvi_4289 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 5,133,680 to 5,134,252 _4289 Echvi_4290: Echvi_4290 - Activator of Hsp90 ATPase homolog 1-like protein., at 5,134,374 to 5,134,778 _4290 Echvi_4291: Echvi_4291 - Dihydrofolate reductase, at 5,134,783 to 5,135,319 _4291 Echvi_4292: Echvi_4292 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,135,386 to 5,136,114 _4292 Position (kb) 5134 5135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5133.394 kb on + strandat 5133.401 kb on + strandat 5133.403 kb on + strandat 5133.409 kb on + strandat 5133.409 kb on + strandat 5133.410 kb on - strandat 5133.410 kb on - strandat 5133.411 kb on + strandat 5133.411 kb on + strandat 5133.417 kb on + strandat 5133.417 kb on + strandat 5133.418 kb on - strandat 5133.426 kb on - strandat 5133.463 kb on + strandat 5133.463 kb on + strandat 5133.464 kb on - strandat 5133.526 kb on + strandat 5133.528 kb on + strandat 5133.529 kb on - strandat 5133.533 kb on - strandat 5133.533 kb on - strandat 5133.541 kb on + strandat 5133.563 kb on - strandat 5133.563 kb on - strandat 5133.566 kb on - strandat 5133.566 kb on - strandat 5133.633 kb on + strandat 5133.645 kb on + strandat 5133.646 kb on - strandat 5133.663 kb on + strandat 5133.663 kb on + strandat 5133.663 kb on + strandat 5133.663 kb on + strandat 5133.681 kb on + strandat 5133.681 kb on + strandat 5133.682 kb on - strandat 5133.686 kb on - strandat 5133.734 kb on + strandat 5133.734 kb on + strandat 5133.734 kb on + strandat 5133.735 kb on - strandat 5133.746 kb on + strand, within Echvi_4289at 5133.746 kb on + strand, within Echvi_4289at 5133.746 kb on + strand, within Echvi_4289at 5133.770 kb on + strand, within Echvi_4289at 5133.771 kb on - strand, within Echvi_4289at 5133.773 kb on + strand, within Echvi_4289at 5133.773 kb on + strand, within Echvi_4289at 5133.791 kb on - strand, within Echvi_4289at 5133.791 kb on - strand, within Echvi_4289at 5133.860 kb on + strand, within Echvi_4289at 5133.866 kb on + strand, within Echvi_4289at 5133.866 kb on + strand, within Echvi_4289at 5133.866 kb on + strand, within Echvi_4289at 5133.866 kb on + strand, within Echvi_4289at 5133.867 kb on - strand, within Echvi_4289at 5133.867 kb on - strand, within Echvi_4289at 5133.875 kb on + strand, within Echvi_4289at 5133.875 kb on + strand, within Echvi_4289at 5133.876 kb on - strand, within Echvi_4289at 5133.930 kb on - strand, within Echvi_4289at 5133.949 kb on + strand, within Echvi_4289at 5133.949 kb on + strand, within Echvi_4289at 5133.967 kb on + strand, within Echvi_4289at 5133.968 kb on - strand, within Echvi_4289at 5133.968 kb on - strand, within Echvi_4289at 5133.975 kb on - strand, within Echvi_4289at 5133.975 kb on - strand, within Echvi_4289at 5133.982 kb on - strand, within Echvi_4289at 5134.020 kb on - strand, within Echvi_4289at 5134.020 kb on - strand, within Echvi_4289at 5134.085 kb on - strand, within Echvi_4289at 5134.087 kb on + strand, within Echvi_4289at 5134.088 kb on - strand, within Echvi_4289at 5134.107 kb on + strand, within Echvi_4289at 5134.108 kb on - strand, within Echvi_4289at 5134.127 kb on - strand, within Echvi_4289at 5134.135 kb on + strand, within Echvi_4289at 5134.142 kb on + strand, within Echvi_4289at 5134.142 kb on + strand, within Echvi_4289at 5134.142 kb on + strand, within Echvi_4289at 5134.142 kb on + strand, within Echvi_4289at 5134.143 kb on - strand, within Echvi_4289at 5134.143 kb on - strand, within Echvi_4289at 5134.143 kb on - strand, within Echvi_4289at 5134.143 kb on - strand, within Echvi_4289at 5134.144 kb on + strand, within Echvi_4289at 5134.144 kb on + strand, within Echvi_4289at 5134.145 kb on - strand, within Echvi_4289at 5134.145 kb on - strand, within Echvi_4289at 5134.145 kb on - strand, within Echvi_4289at 5134.145 kb on - strand, within Echvi_4289at 5134.145 kb on - strand, within Echvi_4289at 5134.145 kb on - strand, within Echvi_4289at 5134.184 kb on + strand, within Echvi_4289at 5134.231 kb on - strandat 5134.238 kb on + strandat 5134.289 kb on + strandat 5134.299 kb on - strandat 5134.310 kb on - strandat 5134.311 kb on + strandat 5134.312 kb on - strandat 5134.312 kb on - strandat 5134.315 kb on + strandat 5134.331 kb on + strandat 5134.331 kb on + strandat 5134.331 kb on + strandat 5134.331 kb on + strandat 5134.352 kb on + strandat 5134.352 kb on + strandat 5134.352 kb on + strandat 5134.404 kb on + strandat 5134.417 kb on + strand, within Echvi_4290at 5134.418 kb on - strand, within Echvi_4290at 5134.418 kb on - strand, within Echvi_4290at 5134.418 kb on - strand, within Echvi_4290at 5134.422 kb on - strand, within Echvi_4290at 5134.474 kb on - strand, within Echvi_4290at 5134.499 kb on + strand, within Echvi_4290at 5134.615 kb on + strand, within Echvi_4290at 5134.653 kb on + strand, within Echvi_4290at 5134.659 kb on + strand, within Echvi_4290at 5134.660 kb on - strand, within Echvi_4290at 5134.660 kb on - strand, within Echvi_4290at 5134.661 kb on + strand, within Echvi_4290at 5134.661 kb on + strand, within Echvi_4290at 5134.661 kb on + strand, within Echvi_4290at 5134.661 kb on + strand, within Echvi_4290at 5134.662 kb on - strand, within Echvi_4290at 5134.746 kb on + strandat 5134.803 kb on - strandat 5134.805 kb on + strandat 5134.869 kb on + strand, within Echvi_4291at 5134.869 kb on + strand, within Echvi_4291at 5134.878 kb on + strand, within Echvi_4291at 5134.890 kb on + strand, within Echvi_4291at 5134.923 kb on + strand, within Echvi_4291at 5134.940 kb on - strand, within Echvi_4291at 5134.988 kb on + strand, within Echvi_4291at 5134.988 kb on + strand, within Echvi_4291at 5135.014 kb on + strand, within Echvi_4291at 5135.026 kb on + strand, within Echvi_4291at 5135.027 kb on - strand, within Echvi_4291at 5135.049 kb on - strand, within Echvi_4291at 5135.049 kb on - strand, within Echvi_4291at 5135.049 kb on - strand, within Echvi_4291at 5135.049 kb on - strand, within Echvi_4291at 5135.061 kb on + strand, within Echvi_4291at 5135.088 kb on + strand, within Echvi_4291at 5135.089 kb on - strand, within Echvi_4291at 5135.089 kb on - strand, within Echvi_4291at 5135.089 kb on - strand, within Echvi_4291at 5135.092 kb on + strand, within Echvi_4291at 5135.093 kb on - strand, within Echvi_4291at 5135.093 kb on - strand, within Echvi_4291at 5135.093 kb on - strand, within Echvi_4291at 5135.096 kb on + strand, within Echvi_4291at 5135.120 kb on + strand, within Echvi_4291at 5135.143 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.150 kb on + strand, within Echvi_4291at 5135.151 kb on - strand, within Echvi_4291at 5135.151 kb on - strand, within Echvi_4291at 5135.171 kb on - strand, within Echvi_4291at 5135.171 kb on - strand, within Echvi_4291at 5135.173 kb on - strand, within Echvi_4291at 5135.173 kb on - strand, within Echvi_4291at 5135.175 kb on + strand, within Echvi_4291at 5135.175 kb on + strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.176 kb on - strand, within Echvi_4291at 5135.191 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.197 kb on - strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.205 kb on + strand, within Echvi_4291at 5135.206 kb on - strand, within Echvi_4291at 5135.208 kb on - strand, within Echvi_4291at 5135.273 kb on - strandat 5135.297 kb on - strandat 5135.298 kb on + strandat 5135.308 kb on + strandat 5135.344 kb on + strandat 5135.412 kb on + strandat 5135.413 kb on - strandat 5135.413 kb on - strandat 5135.450 kb on + strandat 5135.450 kb on + strandat 5135.454 kb on - strandat 5135.472 kb on + strand, within Echvi_4292at 5135.476 kb on + strand, within Echvi_4292at 5135.477 kb on - strand, within Echvi_4292at 5135.509 kb on + strand, within Echvi_4292at 5135.598 kb on + strand, within Echvi_4292at 5135.599 kb on - strand, within Echvi_4292at 5135.607 kb on + strand, within Echvi_4292at 5135.607 kb on + strand, within Echvi_4292at 5135.608 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.681 kb on - strand, within Echvi_4292at 5135.688 kb on - strand, within Echvi_4292

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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5,133,394 + -0.8
5,133,401 + -0.1
5,133,403 + -0.4
5,133,409 + +0.9
5,133,409 + -2.0
5,133,410 - -0.1
5,133,410 - +0.5
5,133,411 + -0.2
5,133,411 + -0.5
5,133,417 + +0.2
5,133,417 + +0.7
5,133,418 - +0.9
5,133,426 - -0.3
5,133,463 + +0.4
5,133,463 + +0.1
5,133,464 - +0.2
5,133,526 + -1.0
5,133,528 + -0.5
5,133,529 - -0.9
5,133,533 - +1.2
5,133,533 - +0.1
5,133,541 + -0.2
5,133,563 - +2.7
5,133,563 - -1.1
5,133,566 - +0.3
5,133,566 - -0.0
5,133,633 + +0.3
5,133,645 + +0.2
5,133,646 - -0.2
5,133,663 + -1.1
5,133,663 + -1.0
5,133,663 + -2.3
5,133,663 + -0.4
5,133,681 + -1.1
5,133,681 + -0.9
5,133,682 - +1.4
5,133,686 - -0.5
5,133,734 + -0.1
5,133,734 + +0.0
5,133,734 + -1.0
5,133,735 - +0.6
5,133,746 + Echvi_4289 0.12 +1.9
5,133,746 + Echvi_4289 0.12 +0.7
5,133,746 + Echvi_4289 0.12 -0.2
5,133,770 + Echvi_4289 0.16 +0.9
5,133,771 - Echvi_4289 0.16 +0.0
5,133,773 + Echvi_4289 0.16 +0.0
5,133,773 + Echvi_4289 0.16 +0.3
5,133,791 - Echvi_4289 0.19 +0.6
5,133,791 - Echvi_4289 0.19 -0.3
5,133,860 + Echvi_4289 0.31 -0.7
5,133,866 + Echvi_4289 0.32 +1.7
5,133,866 + Echvi_4289 0.32 +0.2
5,133,866 + Echvi_4289 0.32 -0.5
5,133,866 + Echvi_4289 0.32 +0.3
5,133,867 - Echvi_4289 0.33 -0.3
5,133,867 - Echvi_4289 0.33 +0.2
5,133,875 + Echvi_4289 0.34 -0.5
5,133,875 + Echvi_4289 0.34 -1.5
5,133,876 - Echvi_4289 0.34 +1.0
5,133,930 - Echvi_4289 0.44 -0.1
5,133,949 + Echvi_4289 0.47 -1.1
5,133,949 + Echvi_4289 0.47 +0.5
5,133,967 + Echvi_4289 0.50 -0.1
5,133,968 - Echvi_4289 0.50 -1.6
5,133,968 - Echvi_4289 0.50 -0.4
5,133,975 - Echvi_4289 0.51 -0.3
5,133,975 - Echvi_4289 0.51 -0.3
5,133,982 - Echvi_4289 0.53 +0.7
5,134,020 - Echvi_4289 0.59 +1.1
5,134,020 - Echvi_4289 0.59 -1.4
5,134,085 - Echvi_4289 0.71 +0.5
5,134,087 + Echvi_4289 0.71 -0.5
5,134,088 - Echvi_4289 0.71 -0.0
5,134,107 + Echvi_4289 0.75 -1.0
5,134,108 - Echvi_4289 0.75 -0.1
5,134,127 - Echvi_4289 0.78 -1.4
5,134,135 + Echvi_4289 0.79 -1.2
5,134,142 + Echvi_4289 0.81 -1.2
5,134,142 + Echvi_4289 0.81 -0.1
5,134,142 + Echvi_4289 0.81 -0.8
5,134,142 + Echvi_4289 0.81 -0.2
5,134,143 - Echvi_4289 0.81 +0.6
5,134,143 - Echvi_4289 0.81 +0.4
5,134,143 - Echvi_4289 0.81 +0.2
5,134,143 - Echvi_4289 0.81 -0.9
5,134,144 + Echvi_4289 0.81 -1.1
5,134,144 + Echvi_4289 0.81 -0.5
5,134,145 - Echvi_4289 0.81 -0.4
5,134,145 - Echvi_4289 0.81 +0.2
5,134,145 - Echvi_4289 0.81 +1.1
5,134,145 - Echvi_4289 0.81 -0.5
5,134,145 - Echvi_4289 0.81 -0.2
5,134,145 - Echvi_4289 0.81 -0.2
5,134,184 + Echvi_4289 0.88 +0.6
5,134,231 - +0.5
5,134,238 + -0.1
5,134,289 + -0.3
5,134,299 - -2.0
5,134,310 - -1.5
5,134,311 + +0.6
5,134,312 - -0.4
5,134,312 - +0.9
5,134,315 + +1.6
5,134,331 + -1.1
5,134,331 + +0.2
5,134,331 + +0.1
5,134,331 + -0.5
5,134,352 + -0.0
5,134,352 + -1.2
5,134,352 + -1.0
5,134,404 + -1.1
5,134,417 + Echvi_4290 0.11 -1.3
5,134,418 - Echvi_4290 0.11 -0.7
5,134,418 - Echvi_4290 0.11 -1.1
5,134,418 - Echvi_4290 0.11 +0.9
5,134,422 - Echvi_4290 0.12 -0.9
5,134,474 - Echvi_4290 0.25 -1.1
5,134,499 + Echvi_4290 0.31 -1.8
5,134,615 + Echvi_4290 0.60 -0.6
5,134,653 + Echvi_4290 0.69 -1.3
5,134,659 + Echvi_4290 0.70 +0.3
5,134,660 - Echvi_4290 0.71 -0.2
5,134,660 - Echvi_4290 0.71 +0.4
5,134,661 + Echvi_4290 0.71 -0.6
5,134,661 + Echvi_4290 0.71 -1.3
5,134,661 + Echvi_4290 0.71 +1.6
5,134,661 + Echvi_4290 0.71 -0.0
5,134,662 - Echvi_4290 0.71 -0.6
5,134,746 + -0.3
5,134,803 - -0.6
5,134,805 + -2.3
5,134,869 + Echvi_4291 0.16 -1.7
5,134,869 + Echvi_4291 0.16 -1.6
5,134,878 + Echvi_4291 0.18 -0.5
5,134,890 + Echvi_4291 0.20 -1.8
5,134,923 + Echvi_4291 0.26 -0.0
5,134,940 - Echvi_4291 0.29 -1.5
5,134,988 + Echvi_4291 0.38 -0.6
5,134,988 + Echvi_4291 0.38 -0.3
5,135,014 + Echvi_4291 0.43 -1.4
5,135,026 + Echvi_4291 0.45 +0.3
5,135,027 - Echvi_4291 0.45 -1.3
5,135,049 - Echvi_4291 0.50 +0.1
5,135,049 - Echvi_4291 0.50 +0.4
5,135,049 - Echvi_4291 0.50 -0.8
5,135,049 - Echvi_4291 0.50 +0.6
5,135,061 + Echvi_4291 0.52 +0.2
5,135,088 + Echvi_4291 0.57 +0.1
5,135,089 - Echvi_4291 0.57 +0.7
5,135,089 - Echvi_4291 0.57 +0.1
5,135,089 - Echvi_4291 0.57 -0.3
5,135,092 + Echvi_4291 0.58 -1.9
5,135,093 - Echvi_4291 0.58 +0.9
5,135,093 - Echvi_4291 0.58 +0.0
5,135,093 - Echvi_4291 0.58 +1.0
5,135,096 + Echvi_4291 0.58 -2.8
5,135,120 + Echvi_4291 0.63 +0.4
5,135,143 + Echvi_4291 0.67 +1.2
5,135,150 + Echvi_4291 0.68 -1.6
5,135,150 + Echvi_4291 0.68 +0.1
5,135,150 + Echvi_4291 0.68 -0.3
5,135,150 + Echvi_4291 0.68 +0.1
5,135,150 + Echvi_4291 0.68 -0.6
5,135,151 - Echvi_4291 0.69 +0.4
5,135,151 - Echvi_4291 0.69 +0.8
5,135,171 - Echvi_4291 0.72 +0.7
5,135,171 - Echvi_4291 0.72 -0.2
5,135,173 - Echvi_4291 0.73 -0.3
5,135,173 - Echvi_4291 0.73 -0.4
5,135,175 + Echvi_4291 0.73 -0.7
5,135,175 + Echvi_4291 0.73 -0.8
5,135,176 - Echvi_4291 0.73 +0.5
5,135,176 - Echvi_4291 0.73 -0.9
5,135,176 - Echvi_4291 0.73 +0.7
5,135,176 - Echvi_4291 0.73 +0.5
5,135,191 - Echvi_4291 0.76 -1.4
5,135,197 - Echvi_4291 0.77 -0.7
5,135,197 - Echvi_4291 0.77 +0.4
5,135,197 - Echvi_4291 0.77 +0.6
5,135,197 - Echvi_4291 0.77 -0.2
5,135,205 + Echvi_4291 0.79 -0.2
5,135,205 + Echvi_4291 0.79 -0.9
5,135,205 + Echvi_4291 0.79 +0.9
5,135,205 + Echvi_4291 0.79 -0.0
5,135,205 + Echvi_4291 0.79 +2.3
5,135,205 + Echvi_4291 0.79 +0.1
5,135,205 + Echvi_4291 0.79 +0.4
5,135,206 - Echvi_4291 0.79 -1.4
5,135,208 - Echvi_4291 0.79 -0.4
5,135,273 - -1.3
5,135,297 - -1.9
5,135,298 + +0.4
5,135,308 + -1.3
5,135,344 + -0.5
5,135,412 + +0.7
5,135,413 - -0.2
5,135,413 - +0.4
5,135,450 + -2.0
5,135,450 + -0.2
5,135,454 - -0.1
5,135,472 + Echvi_4292 0.12 -0.3
5,135,476 + Echvi_4292 0.12 +0.5
5,135,477 - Echvi_4292 0.12 -1.4
5,135,509 + Echvi_4292 0.17 +1.1
5,135,598 + Echvi_4292 0.29 -0.6
5,135,599 - Echvi_4292 0.29 -0.3
5,135,607 + Echvi_4292 0.30 -0.1
5,135,607 + Echvi_4292 0.30 -0.3
5,135,608 - Echvi_4292 0.30 +0.0
5,135,681 - Echvi_4292 0.40 +0.1
5,135,681 - Echvi_4292 0.40 -0.2
5,135,681 - Echvi_4292 0.40 +1.8
5,135,681 - Echvi_4292 0.40 -0.7
5,135,688 - Echvi_4292 0.41 -0.1

Or see this region's nucleotide sequence