Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4096 and Echvi_4097 overlap by 10 nucleotides Echvi_4097 and Echvi_4098 overlap by 14 nucleotides Echvi_4098 and Echvi_4099 are separated by 3 nucleotides
Echvi_4096: Echvi_4096 - Bacteroides conjugative transposon TraJ protein, at 4,913,676 to 4,914,695
_4096
Echvi_4097: Echvi_4097 - hypothetical protein, at 4,914,686 to 4,915,315
_4097
Echvi_4098: Echvi_4098 - hypothetical protein, at 4,915,302 to 4,915,964
_4098
Echvi_4099: Echvi_4099 - hypothetical protein, at 4,915,968 to 4,916,663
_4099
Position (kb)
4914
4915
4916 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4913.736 kb on + strand at 4913.736 kb on + strand at 4913.736 kb on + strand at 4913.737 kb on - strand at 4913.738 kb on + strand at 4913.757 kb on + strand at 4913.810 kb on + strand, within Echvi_4096 at 4913.846 kb on + strand, within Echvi_4096 at 4913.846 kb on + strand, within Echvi_4096 at 4913.847 kb on - strand, within Echvi_4096 at 4913.849 kb on - strand, within Echvi_4096 at 4913.849 kb on - strand, within Echvi_4096 at 4913.849 kb on - strand, within Echvi_4096 at 4913.945 kb on + strand, within Echvi_4096 at 4913.946 kb on - strand, within Echvi_4096 at 4913.957 kb on + strand, within Echvi_4096 at 4913.957 kb on + strand, within Echvi_4096 at 4913.957 kb on + strand, within Echvi_4096 at 4913.957 kb on + strand, within Echvi_4096 at 4913.984 kb on + strand, within Echvi_4096 at 4914.004 kb on - strand, within Echvi_4096 at 4914.066 kb on - strand, within Echvi_4096 at 4914.066 kb on - strand, within Echvi_4096 at 4914.069 kb on - strand, within Echvi_4096 at 4914.069 kb on - strand, within Echvi_4096 at 4914.105 kb on + strand at 4914.106 kb on - strand at 4914.109 kb on - strand, within Echvi_4096 at 4914.154 kb on + strand, within Echvi_4096 at 4914.154 kb on + strand, within Echvi_4096 at 4914.155 kb on - strand, within Echvi_4096 at 4914.189 kb on - strand, within Echvi_4096 at 4914.214 kb on + strand, within Echvi_4096 at 4914.258 kb on + strand, within Echvi_4096 at 4914.280 kb on - strand, within Echvi_4096 at 4914.280 kb on - strand, within Echvi_4096 at 4914.312 kb on - strand, within Echvi_4096 at 4914.342 kb on + strand, within Echvi_4096 at 4914.359 kb on + strand, within Echvi_4096 at 4914.360 kb on - strand, within Echvi_4096 at 4914.365 kb on + strand, within Echvi_4096 at 4914.368 kb on + strand, within Echvi_4096 at 4914.458 kb on + strand, within Echvi_4096 at 4914.458 kb on + strand, within Echvi_4096 at 4914.458 kb on + strand, within Echvi_4096 at 4914.557 kb on + strand, within Echvi_4096 at 4914.559 kb on + strand, within Echvi_4096 at 4914.559 kb on + strand, within Echvi_4096 at 4914.733 kb on + strand at 4914.733 kb on + strand at 4914.865 kb on + strand, within Echvi_4097 at 4914.865 kb on + strand, within Echvi_4097 at 4914.866 kb on - strand, within Echvi_4097 at 4914.866 kb on - strand, within Echvi_4097 at 4914.870 kb on - strand, within Echvi_4097 at 4914.936 kb on + strand, within Echvi_4097 at 4915.047 kb on + strand, within Echvi_4097 at 4915.141 kb on - strand, within Echvi_4097 at 4915.150 kb on + strand, within Echvi_4097 at 4915.150 kb on + strand, within Echvi_4097 at 4915.151 kb on - strand, within Echvi_4097 at 4915.170 kb on + strand, within Echvi_4097 at 4915.170 kb on + strand, within Echvi_4097 at 4915.170 kb on + strand, within Echvi_4097 at 4915.171 kb on - strand, within Echvi_4097 at 4915.289 kb on - strand at 4915.289 kb on - strand at 4915.292 kb on + strand at 4915.293 kb on - strand at 4915.293 kb on - strand at 4915.293 kb on - strand at 4915.296 kb on - strand at 4915.296 kb on - strand at 4915.304 kb on - strand at 4915.318 kb on + strand at 4915.332 kb on + strand at 4915.419 kb on - strand, within Echvi_4098 at 4915.428 kb on + strand, within Echvi_4098 at 4915.429 kb on - strand, within Echvi_4098 at 4915.429 kb on - strand, within Echvi_4098 at 4915.446 kb on + strand, within Echvi_4098 at 4915.492 kb on - strand, within Echvi_4098 at 4915.649 kb on + strand, within Echvi_4098 at 4915.677 kb on + strand, within Echvi_4098 at 4915.677 kb on + strand, within Echvi_4098 at 4915.677 kb on + strand, within Echvi_4098 at 4915.678 kb on - strand, within Echvi_4098 at 4915.678 kb on - strand, within Echvi_4098 at 4915.778 kb on + strand, within Echvi_4098 at 4915.778 kb on + strand, within Echvi_4098 at 4915.824 kb on + strand, within Echvi_4098 at 4915.824 kb on + strand, within Echvi_4098 at 4915.824 kb on + strand, within Echvi_4098 at 4915.825 kb on - strand, within Echvi_4098 at 4915.917 kb on + strand at 4915.917 kb on + strand at 4915.917 kb on + strand at 4915.918 kb on - strand at 4915.918 kb on - strand at 4915.964 kb on + strand at 4915.965 kb on - strand at 4915.981 kb on + strand at 4915.982 kb on - strand at 4916.201 kb on + strand, within Echvi_4099 at 4916.201 kb on + strand, within Echvi_4099 at 4916.209 kb on + strand, within Echvi_4099
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 4,913,736 + -0.9 4,913,736 + +1.9 4,913,736 + -0.3 4,913,737 - +1.2 4,913,738 + +0.1 4,913,757 + -0.5 4,913,810 + Echvi_4096 0.13 -1.1 4,913,846 + Echvi_4096 0.17 +0.5 4,913,846 + Echvi_4096 0.17 +0.1 4,913,847 - Echvi_4096 0.17 +0.3 4,913,849 - Echvi_4096 0.17 -0.1 4,913,849 - Echvi_4096 0.17 -1.1 4,913,849 - Echvi_4096 0.17 +0.6 4,913,945 + Echvi_4096 0.26 +0.2 4,913,946 - Echvi_4096 0.26 -0.5 4,913,957 + Echvi_4096 0.28 +0.5 4,913,957 + Echvi_4096 0.28 +0.3 4,913,957 + Echvi_4096 0.28 -0.5 4,913,957 + Echvi_4096 0.28 -0.6 4,913,984 + Echvi_4096 0.30 -1.9 4,914,004 - Echvi_4096 0.32 -0.8 4,914,066 - Echvi_4096 0.38 +0.4 4,914,066 - Echvi_4096 0.38 -0.0 4,914,069 - Echvi_4096 0.39 -0.3 4,914,069 - Echvi_4096 0.39 +0.1 4,914,105 + +1.9 4,914,106 - -0.1 4,914,109 - Echvi_4096 0.42 -0.5 4,914,154 + Echvi_4096 0.47 +1.2 4,914,154 + Echvi_4096 0.47 -1.3 4,914,155 - Echvi_4096 0.47 -0.6 4,914,189 - Echvi_4096 0.50 +1.1 4,914,214 + Echvi_4096 0.53 +0.5 4,914,258 + Echvi_4096 0.57 +0.4 4,914,280 - Echvi_4096 0.59 -0.3 4,914,280 - Echvi_4096 0.59 -0.6 4,914,312 - Echvi_4096 0.62 -0.0 4,914,342 + Echvi_4096 0.65 -0.6 4,914,359 + Echvi_4096 0.67 -0.5 4,914,360 - Echvi_4096 0.67 +0.0 4,914,365 + Echvi_4096 0.68 -1.9 4,914,368 + Echvi_4096 0.68 +0.0 4,914,458 + Echvi_4096 0.77 -0.5 4,914,458 + Echvi_4096 0.77 -0.4 4,914,458 + Echvi_4096 0.77 -0.6 4,914,557 + Echvi_4096 0.86 -2.4 4,914,559 + Echvi_4096 0.87 -0.3 4,914,559 + Echvi_4096 0.87 -1.9 4,914,733 + +0.7 4,914,733 + +0.2 4,914,865 + Echvi_4097 0.28 +0.4 4,914,865 + Echvi_4097 0.28 +0.7 4,914,866 - Echvi_4097 0.29 +0.1 4,914,866 - Echvi_4097 0.29 +0.9 4,914,870 - Echvi_4097 0.29 -0.9 4,914,936 + Echvi_4097 0.40 -0.6 4,915,047 + Echvi_4097 0.57 -2.4 4,915,141 - Echvi_4097 0.72 +0.4 4,915,150 + Echvi_4097 0.74 +0.4 4,915,150 + Echvi_4097 0.74 -1.8 4,915,151 - Echvi_4097 0.74 +0.3 4,915,170 + Echvi_4097 0.77 +1.3 4,915,170 + Echvi_4097 0.77 -1.0 4,915,170 + Echvi_4097 0.77 +2.7 4,915,171 - Echvi_4097 0.77 +0.6 4,915,289 - -0.4 4,915,289 - -0.2 4,915,292 + +0.1 4,915,293 - +0.9 4,915,293 - -2.2 4,915,293 - -0.4 4,915,296 - -0.7 4,915,296 - +1.5 4,915,304 - -0.2 4,915,318 + -0.3 4,915,332 + -0.1 4,915,419 - Echvi_4098 0.18 +0.8 4,915,428 + Echvi_4098 0.19 -1.6 4,915,429 - Echvi_4098 0.19 +0.4 4,915,429 - Echvi_4098 0.19 +1.2 4,915,446 + Echvi_4098 0.22 -0.4 4,915,492 - Echvi_4098 0.29 +0.6 4,915,649 + Echvi_4098 0.52 +0.2 4,915,677 + Echvi_4098 0.57 +1.7 4,915,677 + Echvi_4098 0.57 +0.4 4,915,677 + Echvi_4098 0.57 -1.4 4,915,678 - Echvi_4098 0.57 -0.1 4,915,678 - Echvi_4098 0.57 +0.8 4,915,778 + Echvi_4098 0.72 -0.3 4,915,778 + Echvi_4098 0.72 -0.1 4,915,824 + Echvi_4098 0.79 +0.2 4,915,824 + Echvi_4098 0.79 -0.1 4,915,824 + Echvi_4098 0.79 +0.3 4,915,825 - Echvi_4098 0.79 +0.3 4,915,917 + -0.3 4,915,917 + -0.6 4,915,917 + +1.7 4,915,918 - +0.7 4,915,918 - +0.3 4,915,964 + -0.9 4,915,965 - +0.3 4,915,981 + -0.1 4,915,982 - +1.5 4,916,201 + Echvi_4099 0.33 +0.2 4,916,201 + Echvi_4099 0.33 -0.3 4,916,209 + Echvi_4099 0.35 +1.0
Or see this region's nucleotide sequence