Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2929 and Echvi_2930 are separated by 13 nucleotides Echvi_2930 and Echvi_2931 are separated by 146 nucleotides
Echvi_2929: Echvi_2929 - Membrane proteins related to metalloendopeptidases, at 3,506,341 to 3,508,182
_2929
Echvi_2930: Echvi_2930 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 3,508,196 to 3,508,807
_2930
Echvi_2931: Echvi_2931 - Pirin-related protein, at 3,508,954 to 3,509,823
_2931
Position (kb)
3508
3509 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3507.238 kb on - strand, within Echvi_2929 at 3507.299 kb on + strand, within Echvi_2929 at 3507.315 kb on + strand, within Echvi_2929 at 3507.316 kb on - strand, within Echvi_2929 at 3507.317 kb on + strand, within Echvi_2929 at 3507.318 kb on - strand, within Echvi_2929 at 3507.339 kb on + strand, within Echvi_2929 at 3507.368 kb on - strand, within Echvi_2929 at 3507.380 kb on - strand, within Echvi_2929 at 3507.435 kb on - strand, within Echvi_2929 at 3507.467 kb on + strand, within Echvi_2929 at 3507.467 kb on + strand, within Echvi_2929 at 3507.467 kb on + strand, within Echvi_2929 at 3507.467 kb on + strand, within Echvi_2929 at 3507.468 kb on - strand, within Echvi_2929 at 3507.468 kb on - strand, within Echvi_2929 at 3507.508 kb on + strand, within Echvi_2929 at 3507.509 kb on - strand, within Echvi_2929 at 3507.509 kb on - strand, within Echvi_2929 at 3507.541 kb on + strand, within Echvi_2929 at 3507.542 kb on - strand, within Echvi_2929 at 3507.615 kb on + strand, within Echvi_2929 at 3507.615 kb on + strand, within Echvi_2929 at 3507.616 kb on - strand, within Echvi_2929 at 3507.624 kb on + strand, within Echvi_2929 at 3507.625 kb on - strand, within Echvi_2929 at 3507.664 kb on + strand, within Echvi_2929 at 3507.664 kb on + strand, within Echvi_2929 at 3507.767 kb on + strand, within Echvi_2929 at 3507.863 kb on + strand, within Echvi_2929 at 3507.863 kb on + strand, within Echvi_2929 at 3507.864 kb on - strand, within Echvi_2929 at 3507.864 kb on - strand, within Echvi_2929 at 3507.864 kb on - strand, within Echvi_2929 at 3507.864 kb on - strand, within Echvi_2929 at 3507.864 kb on - strand, within Echvi_2929 at 3507.864 kb on - strand, within Echvi_2929 at 3507.868 kb on - strand, within Echvi_2929 at 3507.892 kb on + strand, within Echvi_2929 at 3507.902 kb on + strand, within Echvi_2929 at 3507.902 kb on + strand, within Echvi_2929 at 3507.902 kb on + strand, within Echvi_2929 at 3507.902 kb on + strand, within Echvi_2929 at 3507.902 kb on + strand, within Echvi_2929 at 3507.903 kb on - strand, within Echvi_2929 at 3507.903 kb on - strand, within Echvi_2929 at 3507.903 kb on - strand, within Echvi_2929 at 3507.904 kb on + strand, within Echvi_2929 at 3507.904 kb on + strand, within Echvi_2929 at 3507.904 kb on + strand, within Echvi_2929 at 3507.904 kb on + strand, within Echvi_2929 at 3507.905 kb on - strand, within Echvi_2929 at 3507.905 kb on - strand, within Echvi_2929 at 3507.935 kb on + strand, within Echvi_2929 at 3507.950 kb on + strand, within Echvi_2929 at 3507.983 kb on + strand, within Echvi_2929 at 3508.001 kb on + strand at 3508.048 kb on - strand at 3508.091 kb on + strand at 3508.092 kb on - strand at 3508.125 kb on - strand at 3508.127 kb on + strand at 3508.150 kb on + strand at 3508.150 kb on + strand at 3508.151 kb on - strand at 3508.202 kb on - strand at 3508.298 kb on + strand, within Echvi_2930 at 3508.336 kb on - strand, within Echvi_2930 at 3508.549 kb on + strand, within Echvi_2930 at 3508.680 kb on + strand, within Echvi_2930 at 3508.815 kb on + strand at 3508.886 kb on - strand at 3508.888 kb on + strand at 3508.896 kb on - strand at 3508.897 kb on + strand at 3508.897 kb on + strand at 3508.923 kb on + strand at 3508.924 kb on - strand at 3508.931 kb on + strand at 3508.940 kb on - strand at 3508.968 kb on + strand at 3508.970 kb on + strand at 3508.970 kb on + strand at 3508.970 kb on + strand at 3508.971 kb on - strand at 3508.971 kb on - strand at 3508.971 kb on - strand at 3508.971 kb on - strand at 3508.971 kb on - strand at 3509.044 kb on - strand, within Echvi_2931 at 3509.068 kb on + strand, within Echvi_2931 at 3509.069 kb on - strand, within Echvi_2931 at 3509.069 kb on - strand, within Echvi_2931 at 3509.112 kb on + strand, within Echvi_2931 at 3509.112 kb on + strand, within Echvi_2931 at 3509.112 kb on + strand, within Echvi_2931 at 3509.113 kb on - strand, within Echvi_2931 at 3509.113 kb on - strand, within Echvi_2931 at 3509.133 kb on + strand, within Echvi_2931 at 3509.133 kb on + strand, within Echvi_2931 at 3509.167 kb on + strand, within Echvi_2931 at 3509.168 kb on - strand, within Echvi_2931 at 3509.168 kb on - strand, within Echvi_2931 at 3509.328 kb on + strand, within Echvi_2931 at 3509.328 kb on + strand, within Echvi_2931 at 3509.354 kb on - strand, within Echvi_2931 at 3509.670 kb on + strand, within Echvi_2931 at 3509.670 kb on + strand, within Echvi_2931 at 3509.670 kb on + strand, within Echvi_2931 at 3509.672 kb on + strand, within Echvi_2931 at 3509.672 kb on + strand, within Echvi_2931 at 3509.672 kb on + strand, within Echvi_2931 at 3509.673 kb on - strand, within Echvi_2931 at 3509.673 kb on - strand, within Echvi_2931 at 3509.673 kb on - strand, within Echvi_2931 at 3509.673 kb on - strand, within Echvi_2931 at 3509.673 kb on - strand, within Echvi_2931 at 3509.703 kb on + strand, within Echvi_2931 at 3509.703 kb on + strand, within Echvi_2931 at 3509.704 kb on - strand, within Echvi_2931 at 3509.729 kb on - strand, within Echvi_2931 at 3509.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 3,507,238 - Echvi_2929 0.49 -0.5 3,507,299 + Echvi_2929 0.52 -1.9 3,507,315 + Echvi_2929 0.53 -0.7 3,507,316 - Echvi_2929 0.53 -0.7 3,507,317 + Echvi_2929 0.53 -0.3 3,507,318 - Echvi_2929 0.53 -0.6 3,507,339 + Echvi_2929 0.54 -1.6 3,507,368 - Echvi_2929 0.56 -1.5 3,507,380 - Echvi_2929 0.56 -1.1 3,507,435 - Echvi_2929 0.59 -0.5 3,507,467 + Echvi_2929 0.61 -0.0 3,507,467 + Echvi_2929 0.61 +2.8 3,507,467 + Echvi_2929 0.61 +0.1 3,507,467 + Echvi_2929 0.61 -1.1 3,507,468 - Echvi_2929 0.61 +0.8 3,507,468 - Echvi_2929 0.61 -1.3 3,507,508 + Echvi_2929 0.63 -0.2 3,507,509 - Echvi_2929 0.63 -1.3 3,507,509 - Echvi_2929 0.63 -1.9 3,507,541 + Echvi_2929 0.65 -1.2 3,507,542 - Echvi_2929 0.65 +0.3 3,507,615 + Echvi_2929 0.69 -1.2 3,507,615 + Echvi_2929 0.69 +0.1 3,507,616 - Echvi_2929 0.69 +1.0 3,507,624 + Echvi_2929 0.70 +0.2 3,507,625 - Echvi_2929 0.70 -1.5 3,507,664 + Echvi_2929 0.72 -0.9 3,507,664 + Echvi_2929 0.72 -1.6 3,507,767 + Echvi_2929 0.77 +0.3 3,507,863 + Echvi_2929 0.83 -0.9 3,507,863 + Echvi_2929 0.83 -0.2 3,507,864 - Echvi_2929 0.83 +0.3 3,507,864 - Echvi_2929 0.83 -0.8 3,507,864 - Echvi_2929 0.83 -0.5 3,507,864 - Echvi_2929 0.83 -1.0 3,507,864 - Echvi_2929 0.83 +0.2 3,507,864 - Echvi_2929 0.83 -0.4 3,507,868 - Echvi_2929 0.83 -1.4 3,507,892 + Echvi_2929 0.84 +0.8 3,507,902 + Echvi_2929 0.85 -1.2 3,507,902 + Echvi_2929 0.85 -1.6 3,507,902 + Echvi_2929 0.85 -0.7 3,507,902 + Echvi_2929 0.85 -2.2 3,507,902 + Echvi_2929 0.85 -0.6 3,507,903 - Echvi_2929 0.85 +0.1 3,507,903 - Echvi_2929 0.85 +0.8 3,507,903 - Echvi_2929 0.85 +0.9 3,507,904 + Echvi_2929 0.85 -1.7 3,507,904 + Echvi_2929 0.85 -0.2 3,507,904 + Echvi_2929 0.85 -0.0 3,507,904 + Echvi_2929 0.85 -0.7 3,507,905 - Echvi_2929 0.85 -1.9 3,507,905 - Echvi_2929 0.85 -3.6 3,507,935 + Echvi_2929 0.87 -1.9 3,507,950 + Echvi_2929 0.87 -0.9 3,507,983 + Echvi_2929 0.89 -1.0 3,508,001 + -0.6 3,508,048 - -0.1 3,508,091 + +1.8 3,508,092 - -0.2 3,508,125 - -0.4 3,508,127 + +0.8 3,508,150 + -0.5 3,508,150 + -1.6 3,508,151 - -0.2 3,508,202 - -1.4 3,508,298 + Echvi_2930 0.17 -0.9 3,508,336 - Echvi_2930 0.23 -1.6 3,508,549 + Echvi_2930 0.58 -0.7 3,508,680 + Echvi_2930 0.79 +0.1 3,508,815 + -0.9 3,508,886 - +0.5 3,508,888 + -0.4 3,508,896 - -1.3 3,508,897 + -0.3 3,508,897 + -0.2 3,508,923 + +0.8 3,508,924 - -0.3 3,508,931 + -1.9 3,508,940 - -0.8 3,508,968 + +1.1 3,508,970 + -0.1 3,508,970 + +0.7 3,508,970 + +0.8 3,508,971 - -2.4 3,508,971 - -3.4 3,508,971 - -0.0 3,508,971 - -0.7 3,508,971 - -0.6 3,509,044 - Echvi_2931 0.10 +0.6 3,509,068 + Echvi_2931 0.13 -1.1 3,509,069 - Echvi_2931 0.13 -0.4 3,509,069 - Echvi_2931 0.13 +0.1 3,509,112 + Echvi_2931 0.18 +0.1 3,509,112 + Echvi_2931 0.18 -2.6 3,509,112 + Echvi_2931 0.18 -0.6 3,509,113 - Echvi_2931 0.18 -0.5 3,509,113 - Echvi_2931 0.18 -1.3 3,509,133 + Echvi_2931 0.21 +2.3 3,509,133 + Echvi_2931 0.21 +2.3 3,509,167 + Echvi_2931 0.24 -0.9 3,509,168 - Echvi_2931 0.25 -0.5 3,509,168 - Echvi_2931 0.25 -1.3 3,509,328 + Echvi_2931 0.43 +1.6 3,509,328 + Echvi_2931 0.43 +0.3 3,509,354 - Echvi_2931 0.46 -0.4 3,509,670 + Echvi_2931 0.82 -0.0 3,509,670 + Echvi_2931 0.82 +0.7 3,509,670 + Echvi_2931 0.82 -0.5 3,509,672 + Echvi_2931 0.83 -0.6 3,509,672 + Echvi_2931 0.83 +0.1 3,509,672 + Echvi_2931 0.83 +1.5 3,509,673 - Echvi_2931 0.83 +2.0 3,509,673 - Echvi_2931 0.83 +0.0 3,509,673 - Echvi_2931 0.83 +0.1 3,509,673 - Echvi_2931 0.83 +0.5 3,509,673 - Echvi_2931 0.83 -1.3 3,509,703 + Echvi_2931 0.86 +0.9 3,509,703 + Echvi_2931 0.86 -0.7 3,509,704 - Echvi_2931 0.86 +0.3 3,509,729 - Echvi_2931 0.89 -1.2 3,509,803 - +0.3
Or see this region's nucleotide sequence