Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2441 and Echvi_2442 are separated by 50 nucleotides Echvi_2442 and Echvi_2443 overlap by 4 nucleotides Echvi_2443 and Echvi_2444 are separated by 27 nucleotides Echvi_2444 and Echvi_2445 are separated by 8 nucleotides
Echvi_2441: Echvi_2441 - Methylmalonyl-CoA mutase, N-terminal domain/subunit, at 2,897,257 to 2,900,634
_2441
Echvi_2442: Echvi_2442 - Predicted redox protein, regulator of disulfide bond formation, at 2,900,685 to 2,901,098
_2442
Echvi_2443: Echvi_2443 - hypothetical protein, at 2,901,095 to 2,901,334
_2443
Echvi_2444: Echvi_2444 - Predicted cysteine protease (OTU family), at 2,901,362 to 2,902,372
_2444
Echvi_2445: Echvi_2445 - PAS domain S-box, at 2,902,381 to 2,905,251
_2445
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2900.412 kb on + strand at 2900.523 kb on + strand at 2900.523 kb on + strand at 2900.550 kb on + strand at 2900.551 kb on - strand at 2900.551 kb on - strand at 2900.586 kb on + strand at 2900.633 kb on - strand at 2900.658 kb on + strand at 2900.659 kb on - strand at 2900.667 kb on + strand at 2900.731 kb on - strand, within Echvi_2442 at 2900.767 kb on + strand, within Echvi_2442 at 2900.767 kb on + strand, within Echvi_2442 at 2900.767 kb on + strand, within Echvi_2442 at 2900.768 kb on - strand, within Echvi_2442 at 2900.768 kb on - strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.771 kb on + strand, within Echvi_2442 at 2900.772 kb on - strand, within Echvi_2442 at 2900.772 kb on - strand, within Echvi_2442 at 2900.772 kb on - strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.775 kb on + strand, within Echvi_2442 at 2900.776 kb on - strand, within Echvi_2442 at 2900.776 kb on - strand, within Echvi_2442 at 2900.776 kb on - strand, within Echvi_2442 at 2900.807 kb on + strand, within Echvi_2442 at 2900.807 kb on + strand, within Echvi_2442 at 2900.807 kb on + strand, within Echvi_2442 at 2900.819 kb on - strand, within Echvi_2442 at 2900.848 kb on + strand, within Echvi_2442 at 2900.848 kb on + strand, within Echvi_2442 at 2900.897 kb on + strand, within Echvi_2442 at 2900.898 kb on - strand, within Echvi_2442 at 2900.902 kb on + strand, within Echvi_2442 at 2900.903 kb on - strand, within Echvi_2442 at 2900.943 kb on + strand, within Echvi_2442 at 2900.943 kb on + strand, within Echvi_2442 at 2900.943 kb on + strand, within Echvi_2442 at 2900.944 kb on - strand, within Echvi_2442 at 2900.944 kb on - strand, within Echvi_2442 at 2900.945 kb on + strand, within Echvi_2442 at 2900.945 kb on + strand, within Echvi_2442 at 2900.946 kb on - strand, within Echvi_2442 at 2901.029 kb on + strand, within Echvi_2442 at 2901.029 kb on + strand, within Echvi_2442 at 2901.029 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.033 kb on + strand, within Echvi_2442 at 2901.034 kb on - strand, within Echvi_2442 at 2901.034 kb on - strand, within Echvi_2442 at 2901.072 kb on + strand at 2901.073 kb on - strand at 2901.075 kb on - strand at 2901.161 kb on + strand, within Echvi_2443 at 2901.162 kb on - strand, within Echvi_2443 at 2901.162 kb on - strand, within Echvi_2443 at 2901.162 kb on - strand, within Echvi_2443 at 2901.173 kb on + strand, within Echvi_2443 at 2901.174 kb on - strand, within Echvi_2443 at 2901.200 kb on + strand, within Echvi_2443 at 2901.201 kb on - strand, within Echvi_2443 at 2901.329 kb on - strand at 2901.353 kb on + strand at 2901.353 kb on + strand at 2901.360 kb on - strand at 2901.368 kb on + strand at 2901.368 kb on + strand at 2901.374 kb on + strand at 2901.409 kb on + strand at 2901.418 kb on + strand at 2901.418 kb on + strand at 2901.438 kb on + strand at 2901.439 kb on - strand at 2901.439 kb on - strand at 2901.439 kb on - strand at 2901.439 kb on - strand at 2901.440 kb on + strand at 2901.440 kb on + strand at 2901.440 kb on + strand at 2901.441 kb on - strand at 2901.441 kb on - strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.442 kb on + strand at 2901.443 kb on - strand at 2901.445 kb on + strand at 2901.446 kb on - strand at 2901.469 kb on + strand, within Echvi_2444 at 2901.469 kb on + strand, within Echvi_2444 at 2901.542 kb on + strand, within Echvi_2444 at 2901.566 kb on + strand, within Echvi_2444 at 2901.567 kb on - strand, within Echvi_2444 at 2901.618 kb on + strand, within Echvi_2444 at 2901.618 kb on + strand, within Echvi_2444 at 2901.620 kb on + strand, within Echvi_2444 at 2901.621 kb on - strand, within Echvi_2444 at 2901.649 kb on + strand, within Echvi_2444 at 2901.649 kb on + strand, within Echvi_2444 at 2901.650 kb on - strand, within Echvi_2444 at 2901.650 kb on - strand, within Echvi_2444 at 2901.650 kb on - strand, within Echvi_2444 at 2901.667 kb on + strand, within Echvi_2444 at 2901.667 kb on + strand, within Echvi_2444 at 2901.667 kb on + strand, within Echvi_2444 at 2901.704 kb on + strand, within Echvi_2444 at 2901.705 kb on - strand, within Echvi_2444 at 2901.743 kb on + strand, within Echvi_2444 at 2901.743 kb on + strand, within Echvi_2444 at 2901.779 kb on - strand, within Echvi_2444 at 2901.795 kb on + strand, within Echvi_2444 at 2901.795 kb on + strand, within Echvi_2444 at 2901.796 kb on - strand, within Echvi_2444 at 2901.799 kb on + strand, within Echvi_2444 at 2901.853 kb on + strand, within Echvi_2444 at 2901.853 kb on + strand, within Echvi_2444 at 2901.925 kb on + strand, within Echvi_2444 at 2901.925 kb on + strand, within Echvi_2444 at 2901.925 kb on + strand, within Echvi_2444 at 2901.926 kb on - strand, within Echvi_2444 at 2901.929 kb on + strand, within Echvi_2444 at 2901.996 kb on + strand, within Echvi_2444 at 2902.026 kb on + strand, within Echvi_2444 at 2902.079 kb on - strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.080 kb on + strand, within Echvi_2444 at 2902.131 kb on + strand, within Echvi_2444 at 2902.161 kb on - strand, within Echvi_2444 at 2902.209 kb on + strand, within Echvi_2444 at 2902.210 kb on - strand, within Echvi_2444 at 2902.213 kb on + strand, within Echvi_2444 at 2902.214 kb on - strand, within Echvi_2444 at 2902.277 kb on + strand at 2902.310 kb on + strand at 2902.310 kb on + strand at 2902.311 kb on - strand at 2902.319 kb on + strand at 2902.319 kb on + strand at 2902.324 kb on + strand at 2902.349 kb on + strand at 2902.349 kb on + strand at 2902.349 kb on + strand at 2902.349 kb on + strand at 2902.350 kb on - strand at 2902.350 kb on - strand at 2902.353 kb on + strand at 2902.353 kb on + strand at 2902.421 kb on + strand at 2902.422 kb on - strand at 2902.422 kb on - strand at 2902.545 kb on - strand at 2902.573 kb on - strand at 2902.582 kb on + strand at 2902.597 kb on + strand at 2902.598 kb on - strand at 2902.601 kb on - strand at 2902.622 kb on - strand at 2902.685 kb on - strand, within Echvi_2445 at 2902.698 kb on - strand, within Echvi_2445 at 2902.701 kb on + strand, within Echvi_2445 at 2902.702 kb on - strand, within Echvi_2445 at 2902.759 kb on + strand, within Echvi_2445 at 2902.842 kb on + strand, within Echvi_2445 at 2902.843 kb on - strand, within Echvi_2445 at 2902.853 kb on + strand, within Echvi_2445 at 2902.853 kb on + strand, within Echvi_2445 at 2902.869 kb on - strand, within Echvi_2445 at 2902.907 kb on + strand, within Echvi_2445 at 2902.907 kb on + strand, within Echvi_2445 at 2902.908 kb on - strand, within Echvi_2445 at 2902.923 kb on + strand, within Echvi_2445 at 2902.937 kb on - strand, within Echvi_2445 at 2902.991 kb on + strand, within Echvi_2445 at 2903.051 kb on - strand, within Echvi_2445 at 2903.051 kb on - strand, within Echvi_2445 at 2903.100 kb on - strand, within Echvi_2445 at 2903.158 kb on - strand, within Echvi_2445 at 2903.158 kb on - strand, within Echvi_2445 at 2903.158 kb on - strand, within Echvi_2445 at 2903.194 kb on - strand, within Echvi_2445 at 2903.200 kb on + strand, within Echvi_2445 at 2903.200 kb on + strand, within Echvi_2445 at 2903.210 kb on - strand, within Echvi_2445 at 2903.210 kb on - strand, within Echvi_2445 at 2903.210 kb on - strand, within Echvi_2445 at 2903.210 kb on - strand, within Echvi_2445 at 2903.257 kb on + strand, within Echvi_2445 at 2903.258 kb on - strand, within Echvi_2445 at 2903.258 kb on - strand, within Echvi_2445 at 2903.285 kb on + strand, within Echvi_2445 at 2903.298 kb on + strand, within Echvi_2445 at 2903.298 kb on + strand, within Echvi_2445 at 2903.300 kb on + strand, within Echvi_2445 at 2903.300 kb on + strand, within Echvi_2445 at 2903.301 kb on - strand, within Echvi_2445
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 2,900,412 + -3.2 2,900,523 + -1.7 2,900,523 + -0.4 2,900,550 + +0.2 2,900,551 - -0.4 2,900,551 - +0.4 2,900,586 + -1.0 2,900,633 - +0.3 2,900,658 + -0.5 2,900,659 - +1.6 2,900,667 + -1.8 2,900,731 - Echvi_2442 0.11 +0.9 2,900,767 + Echvi_2442 0.20 -0.9 2,900,767 + Echvi_2442 0.20 -0.7 2,900,767 + Echvi_2442 0.20 +0.0 2,900,768 - Echvi_2442 0.20 -0.1 2,900,768 - Echvi_2442 0.20 -1.0 2,900,771 + Echvi_2442 0.21 -0.2 2,900,771 + Echvi_2442 0.21 -0.9 2,900,771 + Echvi_2442 0.21 -0.2 2,900,771 + Echvi_2442 0.21 -1.6 2,900,771 + Echvi_2442 0.21 -0.8 2,900,771 + Echvi_2442 0.21 -1.9 2,900,771 + Echvi_2442 0.21 -0.0 2,900,771 + Echvi_2442 0.21 -1.8 2,900,771 + Echvi_2442 0.21 -0.2 2,900,771 + Echvi_2442 0.21 -1.2 2,900,771 + Echvi_2442 0.21 -0.6 2,900,771 + Echvi_2442 0.21 -1.0 2,900,771 + Echvi_2442 0.21 -1.7 2,900,772 - Echvi_2442 0.21 +1.6 2,900,772 - Echvi_2442 0.21 -0.1 2,900,772 - Echvi_2442 0.21 -0.1 2,900,775 + Echvi_2442 0.22 -0.7 2,900,775 + Echvi_2442 0.22 -1.6 2,900,775 + Echvi_2442 0.22 -2.3 2,900,775 + Echvi_2442 0.22 -1.0 2,900,775 + Echvi_2442 0.22 +2.9 2,900,775 + Echvi_2442 0.22 -0.5 2,900,775 + Echvi_2442 0.22 -1.2 2,900,775 + Echvi_2442 0.22 -1.7 2,900,775 + Echvi_2442 0.22 -0.3 2,900,775 + Echvi_2442 0.22 -0.2 2,900,775 + Echvi_2442 0.22 -1.4 2,900,776 - Echvi_2442 0.22 -2.8 2,900,776 - Echvi_2442 0.22 +0.5 2,900,776 - Echvi_2442 0.22 -1.6 2,900,807 + Echvi_2442 0.29 +0.3 2,900,807 + Echvi_2442 0.29 -1.8 2,900,807 + Echvi_2442 0.29 -0.3 2,900,819 - Echvi_2442 0.32 +0.7 2,900,848 + Echvi_2442 0.39 -1.3 2,900,848 + Echvi_2442 0.39 -0.7 2,900,897 + Echvi_2442 0.51 -1.5 2,900,898 - Echvi_2442 0.51 -0.1 2,900,902 + Echvi_2442 0.52 -1.2 2,900,903 - Echvi_2442 0.53 +0.4 2,900,943 + Echvi_2442 0.62 -0.7 2,900,943 + Echvi_2442 0.62 -0.0 2,900,943 + Echvi_2442 0.62 -2.1 2,900,944 - Echvi_2442 0.63 -0.9 2,900,944 - Echvi_2442 0.63 +1.3 2,900,945 + Echvi_2442 0.63 -0.1 2,900,945 + Echvi_2442 0.63 -0.7 2,900,946 - Echvi_2442 0.63 -2.4 2,901,029 + Echvi_2442 0.83 -0.9 2,901,029 + Echvi_2442 0.83 +1.3 2,901,029 + Echvi_2442 0.83 -1.3 2,901,033 + Echvi_2442 0.84 -1.5 2,901,033 + Echvi_2442 0.84 -0.1 2,901,033 + Echvi_2442 0.84 -3.7 2,901,033 + Echvi_2442 0.84 -0.4 2,901,033 + Echvi_2442 0.84 -1.7 2,901,033 + Echvi_2442 0.84 -0.2 2,901,034 - Echvi_2442 0.84 +0.0 2,901,034 - Echvi_2442 0.84 +0.1 2,901,072 + -0.9 2,901,073 - +2.9 2,901,075 - +0.6 2,901,161 + Echvi_2443 0.28 -1.0 2,901,162 - Echvi_2443 0.28 +1.0 2,901,162 - Echvi_2443 0.28 +0.2 2,901,162 - Echvi_2443 0.28 +0.5 2,901,173 + Echvi_2443 0.33 -1.4 2,901,174 - Echvi_2443 0.33 +0.4 2,901,200 + Echvi_2443 0.44 -2.8 2,901,201 - Echvi_2443 0.44 +3.9 2,901,329 - +0.2 2,901,353 + -2.2 2,901,353 + +0.1 2,901,360 - +0.2 2,901,368 + -2.1 2,901,368 + -3.3 2,901,374 + -1.0 2,901,409 + -2.0 2,901,418 + -2.1 2,901,418 + -1.0 2,901,438 + -1.6 2,901,439 - +1.5 2,901,439 - +1.5 2,901,439 - -0.5 2,901,439 - -0.5 2,901,440 + -0.6 2,901,440 + -1.9 2,901,440 + +0.5 2,901,441 - -1.3 2,901,441 - -1.3 2,901,442 + -1.0 2,901,442 + -0.9 2,901,442 + -0.6 2,901,442 + -2.3 2,901,442 + -2.1 2,901,442 + -1.1 2,901,442 + +0.9 2,901,442 + -1.8 2,901,442 + -1.0 2,901,443 - -1.6 2,901,445 + -1.3 2,901,446 - +1.9 2,901,469 + Echvi_2444 0.11 -1.6 2,901,469 + Echvi_2444 0.11 -1.8 2,901,542 + Echvi_2444 0.18 -1.9 2,901,566 + Echvi_2444 0.20 -2.9 2,901,567 - Echvi_2444 0.20 +1.9 2,901,618 + Echvi_2444 0.25 -0.6 2,901,618 + Echvi_2444 0.25 -2.0 2,901,620 + Echvi_2444 0.26 +0.3 2,901,621 - Echvi_2444 0.26 -2.2 2,901,649 + Echvi_2444 0.28 -1.1 2,901,649 + Echvi_2444 0.28 -1.8 2,901,650 - Echvi_2444 0.28 +0.3 2,901,650 - Echvi_2444 0.28 -0.4 2,901,650 - Echvi_2444 0.28 +0.5 2,901,667 + Echvi_2444 0.30 +0.9 2,901,667 + Echvi_2444 0.30 +0.1 2,901,667 + Echvi_2444 0.30 -1.1 2,901,704 + Echvi_2444 0.34 -0.9 2,901,705 - Echvi_2444 0.34 -0.9 2,901,743 + Echvi_2444 0.38 -2.7 2,901,743 + Echvi_2444 0.38 -0.3 2,901,779 - Echvi_2444 0.41 +0.0 2,901,795 + Echvi_2444 0.43 +0.8 2,901,795 + Echvi_2444 0.43 -1.6 2,901,796 - Echvi_2444 0.43 +0.8 2,901,799 + Echvi_2444 0.43 -1.6 2,901,853 + Echvi_2444 0.49 -0.7 2,901,853 + Echvi_2444 0.49 -1.5 2,901,925 + Echvi_2444 0.56 -1.6 2,901,925 + Echvi_2444 0.56 -2.3 2,901,925 + Echvi_2444 0.56 -0.3 2,901,926 - Echvi_2444 0.56 -0.1 2,901,929 + Echvi_2444 0.56 -1.0 2,901,996 + Echvi_2444 0.63 -0.5 2,902,026 + Echvi_2444 0.66 -0.3 2,902,079 - Echvi_2444 0.71 +0.3 2,902,080 + Echvi_2444 0.71 -1.3 2,902,080 + Echvi_2444 0.71 -1.3 2,902,080 + Echvi_2444 0.71 -2.7 2,902,080 + Echvi_2444 0.71 -2.1 2,902,131 + Echvi_2444 0.76 -0.9 2,902,161 - Echvi_2444 0.79 +0.1 2,902,209 + Echvi_2444 0.84 -2.7 2,902,210 - Echvi_2444 0.84 -2.2 2,902,213 + Echvi_2444 0.84 -1.1 2,902,214 - Echvi_2444 0.84 +0.6 2,902,277 + -1.2 2,902,310 + -2.1 2,902,310 + -1.3 2,902,311 - -1.1 2,902,319 + -0.7 2,902,319 + -1.2 2,902,324 + -1.4 2,902,349 + -0.6 2,902,349 + -1.4 2,902,349 + +0.3 2,902,349 + +0.1 2,902,350 - -0.6 2,902,350 - +0.1 2,902,353 + -0.8 2,902,353 + -0.5 2,902,421 + +0.4 2,902,422 - -0.0 2,902,422 - +0.5 2,902,545 - +2.2 2,902,573 - +1.9 2,902,582 + -1.3 2,902,597 + +1.2 2,902,598 - -0.1 2,902,601 - +0.5 2,902,622 - +0.1 2,902,685 - Echvi_2445 0.11 +1.0 2,902,698 - Echvi_2445 0.11 +1.4 2,902,701 + Echvi_2445 0.11 +0.3 2,902,702 - Echvi_2445 0.11 +0.2 2,902,759 + Echvi_2445 0.13 +1.3 2,902,842 + Echvi_2445 0.16 +0.7 2,902,843 - Echvi_2445 0.16 +1.0 2,902,853 + Echvi_2445 0.16 +1.4 2,902,853 + Echvi_2445 0.16 +0.9 2,902,869 - Echvi_2445 0.17 -0.3 2,902,907 + Echvi_2445 0.18 -0.5 2,902,907 + Echvi_2445 0.18 +1.2 2,902,908 - Echvi_2445 0.18 -0.5 2,902,923 + Echvi_2445 0.19 +1.4 2,902,937 - Echvi_2445 0.19 +0.5 2,902,991 + Echvi_2445 0.21 +1.5 2,903,051 - Echvi_2445 0.23 -1.5 2,903,051 - Echvi_2445 0.23 +1.3 2,903,100 - Echvi_2445 0.25 +1.6 2,903,158 - Echvi_2445 0.27 +0.9 2,903,158 - Echvi_2445 0.27 -0.3 2,903,158 - Echvi_2445 0.27 +0.9 2,903,194 - Echvi_2445 0.28 -1.0 2,903,200 + Echvi_2445 0.29 +0.6 2,903,200 + Echvi_2445 0.29 +0.0 2,903,210 - Echvi_2445 0.29 +0.0 2,903,210 - Echvi_2445 0.29 +1.4 2,903,210 - Echvi_2445 0.29 +0.3 2,903,210 - Echvi_2445 0.29 +1.0 2,903,257 + Echvi_2445 0.31 +1.9 2,903,258 - Echvi_2445 0.31 +2.3 2,903,258 - Echvi_2445 0.31 -0.5 2,903,285 + Echvi_2445 0.31 +1.0 2,903,298 + Echvi_2445 0.32 -0.3 2,903,298 + Echvi_2445 0.32 -0.5 2,903,300 + Echvi_2445 0.32 +1.5 2,903,300 + Echvi_2445 0.32 +4.0 2,903,301 - Echvi_2445 0.32 +1.9
Or see this region's nucleotide sequence