Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2175 and Echvi_2176 are separated by 127 nucleotides Echvi_2176 and Echvi_2177 are separated by 83 nucleotides Echvi_2177 and Echvi_2178 are separated by 34 nucleotides
Echvi_2175: Echvi_2175 - hypothetical protein, at 2,598,394 to 2,598,486
_2175
Echvi_2176: Echvi_2176 - RNA polymerase sigma factor, sigma-70 family, at 2,598,614 to 2,599,261
_2176
Echvi_2177: Echvi_2177 - Fe2+-dicitrate sensor, membrane component, at 2,599,345 to 2,600,397
_2177
Echvi_2178: Echvi_2178 - TonB-linked outer membrane protein, SusC/RagA family, at 2,600,432 to 2,603,869
_2178
Position (kb)
2599
2600
2601 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2598.349 kb on - strand at 2598.374 kb on + strand at 2598.584 kb on - strand at 2598.638 kb on + strand at 2598.712 kb on + strand, within Echvi_2176 at 2598.751 kb on + strand, within Echvi_2176 at 2598.752 kb on - strand, within Echvi_2176 at 2598.752 kb on - strand, within Echvi_2176 at 2598.754 kb on - strand, within Echvi_2176 at 2598.757 kb on + strand, within Echvi_2176 at 2598.757 kb on + strand, within Echvi_2176 at 2598.757 kb on + strand, within Echvi_2176 at 2598.758 kb on - strand, within Echvi_2176 at 2598.758 kb on - strand, within Echvi_2176 at 2598.758 kb on - strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.759 kb on + strand, within Echvi_2176 at 2598.760 kb on - strand, within Echvi_2176 at 2598.760 kb on - strand, within Echvi_2176 at 2598.760 kb on - strand, within Echvi_2176 at 2598.760 kb on - strand, within Echvi_2176 at 2598.760 kb on - strand, within Echvi_2176 at 2598.760 kb on - strand, within Echvi_2176 at 2598.761 kb on + strand, within Echvi_2176 at 2598.761 kb on + strand, within Echvi_2176 at 2598.761 kb on + strand, within Echvi_2176 at 2598.761 kb on + strand, within Echvi_2176 at 2598.761 kb on + strand, within Echvi_2176 at 2598.761 kb on + strand, within Echvi_2176 at 2598.762 kb on - strand, within Echvi_2176 at 2598.762 kb on - strand, within Echvi_2176 at 2598.762 kb on - strand, within Echvi_2176 at 2598.763 kb on + strand, within Echvi_2176 at 2598.847 kb on + strand, within Echvi_2176 at 2598.847 kb on + strand, within Echvi_2176 at 2598.886 kb on + strand, within Echvi_2176 at 2598.886 kb on + strand, within Echvi_2176 at 2598.886 kb on + strand, within Echvi_2176 at 2598.887 kb on - strand, within Echvi_2176 at 2598.887 kb on - strand, within Echvi_2176 at 2598.960 kb on - strand, within Echvi_2176 at 2598.994 kb on + strand, within Echvi_2176 at 2599.000 kb on - strand, within Echvi_2176 at 2599.115 kb on + strand, within Echvi_2176 at 2599.115 kb on + strand, within Echvi_2176 at 2599.163 kb on + strand, within Echvi_2176 at 2599.186 kb on + strand, within Echvi_2176 at 2599.187 kb on - strand, within Echvi_2176 at 2599.190 kb on - strand, within Echvi_2176 at 2599.397 kb on + strand at 2599.484 kb on - strand, within Echvi_2177 at 2599.514 kb on - strand, within Echvi_2177 at 2599.525 kb on + strand, within Echvi_2177 at 2599.626 kb on - strand, within Echvi_2177 at 2599.680 kb on - strand, within Echvi_2177 at 2599.732 kb on - strand, within Echvi_2177 at 2599.732 kb on - strand, within Echvi_2177 at 2599.819 kb on - strand, within Echvi_2177 at 2599.831 kb on - strand, within Echvi_2177 at 2599.950 kb on - strand, within Echvi_2177 at 2599.953 kb on - strand, within Echvi_2177 at 2599.978 kb on - strand, within Echvi_2177 at 2600.069 kb on + strand, within Echvi_2177 at 2600.069 kb on + strand, within Echvi_2177 at 2600.070 kb on - strand, within Echvi_2177 at 2600.077 kb on + strand, within Echvi_2177 at 2600.078 kb on - strand, within Echvi_2177 at 2600.081 kb on + strand, within Echvi_2177 at 2600.105 kb on + strand, within Echvi_2177 at 2600.106 kb on - strand, within Echvi_2177 at 2600.200 kb on - strand, within Echvi_2177 at 2600.200 kb on - strand, within Echvi_2177 at 2600.201 kb on + strand, within Echvi_2177 at 2600.201 kb on + strand, within Echvi_2177 at 2600.201 kb on + strand, within Echvi_2177 at 2600.201 kb on + strand, within Echvi_2177 at 2600.202 kb on - strand, within Echvi_2177 at 2600.202 kb on - strand, within Echvi_2177 at 2600.247 kb on - strand, within Echvi_2177 at 2600.399 kb on + strand at 2600.431 kb on + strand at 2600.496 kb on + strand at 2600.508 kb on + strand at 2600.508 kb on + strand at 2600.572 kb on + strand at 2600.573 kb on - strand at 2600.597 kb on - strand at 2600.622 kb on + strand at 2600.623 kb on - strand at 2600.949 kb on + strand, within Echvi_2178 at 2600.949 kb on + strand, within Echvi_2178 at 2600.950 kb on - strand, within Echvi_2178 at 2600.950 kb on - strand, within Echvi_2178 at 2600.990 kb on - strand, within Echvi_2178 at 2600.990 kb on - strand, within Echvi_2178 at 2601.018 kb on + strand, within Echvi_2178 at 2601.059 kb on - strand, within Echvi_2178 at 2601.078 kb on + strand, within Echvi_2178 at 2601.079 kb on - strand, within Echvi_2178 at 2601.079 kb on - strand, within Echvi_2178 at 2601.088 kb on - strand, within Echvi_2178 at 2601.097 kb on + strand, within Echvi_2178 at 2601.098 kb on - strand, within Echvi_2178 at 2601.178 kb on - strand, within Echvi_2178 at 2601.178 kb on - strand, within Echvi_2178 at 2601.201 kb on + strand, within Echvi_2178 at 2601.201 kb on + strand, within Echvi_2178 at 2601.202 kb on - strand, within Echvi_2178 at 2601.202 kb on - strand, within Echvi_2178 at 2601.202 kb on - strand, within Echvi_2178 at 2601.202 kb on - strand, within Echvi_2178 at 2601.202 kb on - strand, within Echvi_2178 at 2601.202 kb on - strand, within Echvi_2178 at 2601.257 kb on - strand, within Echvi_2178 at 2601.257 kb on - strand, within Echvi_2178 at 2601.257 kb on - strand, within Echvi_2178 at 2601.271 kb on + strand, within Echvi_2178 at 2601.330 kb on + strand, within Echvi_2178 at 2601.330 kb on + strand, within Echvi_2178 at 2601.331 kb on - strand, within Echvi_2178 at 2601.352 kb on - strand, within Echvi_2178
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 2,598,349 - +0.1 2,598,374 + +0.4 2,598,584 - -1.3 2,598,638 + -2.0 2,598,712 + Echvi_2176 0.15 +1.2 2,598,751 + Echvi_2176 0.21 -0.3 2,598,752 - Echvi_2176 0.21 +0.7 2,598,752 - Echvi_2176 0.21 -0.7 2,598,754 - Echvi_2176 0.22 -0.2 2,598,757 + Echvi_2176 0.22 +0.0 2,598,757 + Echvi_2176 0.22 -2.2 2,598,757 + Echvi_2176 0.22 -0.1 2,598,758 - Echvi_2176 0.22 +0.5 2,598,758 - Echvi_2176 0.22 +0.1 2,598,758 - Echvi_2176 0.22 +0.4 2,598,759 + Echvi_2176 0.22 +1.9 2,598,759 + Echvi_2176 0.22 +0.8 2,598,759 + Echvi_2176 0.22 -0.4 2,598,759 + Echvi_2176 0.22 +1.9 2,598,759 + Echvi_2176 0.22 -0.6 2,598,759 + Echvi_2176 0.22 -0.9 2,598,759 + Echvi_2176 0.22 -0.7 2,598,760 - Echvi_2176 0.23 -0.3 2,598,760 - Echvi_2176 0.23 -0.3 2,598,760 - Echvi_2176 0.23 -0.7 2,598,760 - Echvi_2176 0.23 +0.5 2,598,760 - Echvi_2176 0.23 +0.7 2,598,760 - Echvi_2176 0.23 +0.1 2,598,761 + Echvi_2176 0.23 -0.1 2,598,761 + Echvi_2176 0.23 +0.1 2,598,761 + Echvi_2176 0.23 -0.3 2,598,761 + Echvi_2176 0.23 -0.9 2,598,761 + Echvi_2176 0.23 -0.0 2,598,761 + Echvi_2176 0.23 -0.9 2,598,762 - Echvi_2176 0.23 +0.0 2,598,762 - Echvi_2176 0.23 +0.1 2,598,762 - Echvi_2176 0.23 -0.9 2,598,763 + Echvi_2176 0.23 -0.3 2,598,847 + Echvi_2176 0.36 +0.2 2,598,847 + Echvi_2176 0.36 -0.7 2,598,886 + Echvi_2176 0.42 -1.0 2,598,886 + Echvi_2176 0.42 +0.6 2,598,886 + Echvi_2176 0.42 -0.3 2,598,887 - Echvi_2176 0.42 -0.8 2,598,887 - Echvi_2176 0.42 -1.7 2,598,960 - Echvi_2176 0.53 -0.1 2,598,994 + Echvi_2176 0.59 -1.3 2,599,000 - Echvi_2176 0.60 +2.0 2,599,115 + Echvi_2176 0.77 +0.4 2,599,115 + Echvi_2176 0.77 -0.2 2,599,163 + Echvi_2176 0.85 +0.3 2,599,186 + Echvi_2176 0.88 +0.6 2,599,187 - Echvi_2176 0.88 -1.3 2,599,190 - Echvi_2176 0.89 -0.6 2,599,397 + -1.2 2,599,484 - Echvi_2177 0.13 -0.6 2,599,514 - Echvi_2177 0.16 +0.7 2,599,525 + Echvi_2177 0.17 +1.5 2,599,626 - Echvi_2177 0.27 +1.5 2,599,680 - Echvi_2177 0.32 +1.2 2,599,732 - Echvi_2177 0.37 +0.3 2,599,732 - Echvi_2177 0.37 +0.6 2,599,819 - Echvi_2177 0.45 +0.1 2,599,831 - Echvi_2177 0.46 -0.4 2,599,950 - Echvi_2177 0.57 -0.6 2,599,953 - Echvi_2177 0.58 -0.3 2,599,978 - Echvi_2177 0.60 -0.0 2,600,069 + Echvi_2177 0.69 +1.5 2,600,069 + Echvi_2177 0.69 +0.8 2,600,070 - Echvi_2177 0.69 +0.3 2,600,077 + Echvi_2177 0.70 -1.1 2,600,078 - Echvi_2177 0.70 +0.9 2,600,081 + Echvi_2177 0.70 +0.9 2,600,105 + Echvi_2177 0.72 +1.4 2,600,106 - Echvi_2177 0.72 -0.8 2,600,200 - Echvi_2177 0.81 -1.6 2,600,200 - Echvi_2177 0.81 -0.3 2,600,201 + Echvi_2177 0.81 -0.4 2,600,201 + Echvi_2177 0.81 +1.1 2,600,201 + Echvi_2177 0.81 +1.4 2,600,201 + Echvi_2177 0.81 +0.7 2,600,202 - Echvi_2177 0.81 -0.3 2,600,202 - Echvi_2177 0.81 -0.4 2,600,247 - Echvi_2177 0.86 +1.6 2,600,399 + -0.3 2,600,431 + -0.4 2,600,496 + -1.6 2,600,508 + +1.8 2,600,508 + +0.2 2,600,572 + -0.6 2,600,573 - +0.9 2,600,597 - +0.2 2,600,622 + +0.7 2,600,623 - -1.9 2,600,949 + Echvi_2178 0.15 -0.1 2,600,949 + Echvi_2178 0.15 -0.5 2,600,950 - Echvi_2178 0.15 +0.9 2,600,950 - Echvi_2178 0.15 +0.4 2,600,990 - Echvi_2178 0.16 +1.6 2,600,990 - Echvi_2178 0.16 -0.6 2,601,018 + Echvi_2178 0.17 +0.1 2,601,059 - Echvi_2178 0.18 +0.9 2,601,078 + Echvi_2178 0.19 +0.6 2,601,079 - Echvi_2178 0.19 -0.7 2,601,079 - Echvi_2178 0.19 +1.0 2,601,088 - Echvi_2178 0.19 -1.6 2,601,097 + Echvi_2178 0.19 -0.4 2,601,098 - Echvi_2178 0.19 +0.8 2,601,178 - Echvi_2178 0.22 +1.5 2,601,178 - Echvi_2178 0.22 -0.3 2,601,201 + Echvi_2178 0.22 +0.2 2,601,201 + Echvi_2178 0.22 +1.2 2,601,202 - Echvi_2178 0.22 -1.0 2,601,202 - Echvi_2178 0.22 +1.4 2,601,202 - Echvi_2178 0.22 +0.1 2,601,202 - Echvi_2178 0.22 +2.0 2,601,202 - Echvi_2178 0.22 +0.9 2,601,202 - Echvi_2178 0.22 -0.5 2,601,257 - Echvi_2178 0.24 -1.5 2,601,257 - Echvi_2178 0.24 -0.1 2,601,257 - Echvi_2178 0.24 +0.8 2,601,271 + Echvi_2178 0.24 -0.3 2,601,330 + Echvi_2178 0.26 -0.1 2,601,330 + Echvi_2178 0.26 -1.8 2,601,331 - Echvi_2178 0.26 -0.1 2,601,352 - Echvi_2178 0.27 -0.0
Or see this region's nucleotide sequence