Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2177

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2175 and Echvi_2176 are separated by 127 nucleotidesEchvi_2176 and Echvi_2177 are separated by 83 nucleotidesEchvi_2177 and Echvi_2178 are separated by 34 nucleotides Echvi_2175: Echvi_2175 - hypothetical protein, at 2,598,394 to 2,598,486 _2175 Echvi_2176: Echvi_2176 - RNA polymerase sigma factor, sigma-70 family, at 2,598,614 to 2,599,261 _2176 Echvi_2177: Echvi_2177 - Fe2+-dicitrate sensor, membrane component, at 2,599,345 to 2,600,397 _2177 Echvi_2178: Echvi_2178 - TonB-linked outer membrane protein, SusC/RagA family, at 2,600,432 to 2,603,869 _2178 Position (kb) 2599 2600 2601Strain fitness (log2 ratio) -2 -1 0 1 2at 2598.349 kb on - strandat 2598.374 kb on + strandat 2598.584 kb on - strandat 2598.638 kb on + strandat 2598.712 kb on + strand, within Echvi_2176at 2598.751 kb on + strand, within Echvi_2176at 2598.752 kb on - strand, within Echvi_2176at 2598.752 kb on - strand, within Echvi_2176at 2598.754 kb on - strand, within Echvi_2176at 2598.757 kb on + strand, within Echvi_2176at 2598.757 kb on + strand, within Echvi_2176at 2598.757 kb on + strand, within Echvi_2176at 2598.758 kb on - strand, within Echvi_2176at 2598.758 kb on - strand, within Echvi_2176at 2598.758 kb on - strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.759 kb on + strand, within Echvi_2176at 2598.760 kb on - strand, within Echvi_2176at 2598.760 kb on - strand, within Echvi_2176at 2598.760 kb on - strand, within Echvi_2176at 2598.760 kb on - strand, within Echvi_2176at 2598.760 kb on - strand, within Echvi_2176at 2598.760 kb on - strand, within Echvi_2176at 2598.761 kb on + strand, within Echvi_2176at 2598.761 kb on + strand, within Echvi_2176at 2598.761 kb on + strand, within Echvi_2176at 2598.761 kb on + strand, within Echvi_2176at 2598.761 kb on + strand, within Echvi_2176at 2598.761 kb on + strand, within Echvi_2176at 2598.762 kb on - strand, within Echvi_2176at 2598.762 kb on - strand, within Echvi_2176at 2598.762 kb on - strand, within Echvi_2176at 2598.763 kb on + strand, within Echvi_2176at 2598.847 kb on + strand, within Echvi_2176at 2598.847 kb on + strand, within Echvi_2176at 2598.886 kb on + strand, within Echvi_2176at 2598.886 kb on + strand, within Echvi_2176at 2598.886 kb on + strand, within Echvi_2176at 2598.887 kb on - strand, within Echvi_2176at 2598.887 kb on - strand, within Echvi_2176at 2598.960 kb on - strand, within Echvi_2176at 2598.994 kb on + strand, within Echvi_2176at 2599.000 kb on - strand, within Echvi_2176at 2599.115 kb on + strand, within Echvi_2176at 2599.115 kb on + strand, within Echvi_2176at 2599.163 kb on + strand, within Echvi_2176at 2599.186 kb on + strand, within Echvi_2176at 2599.187 kb on - strand, within Echvi_2176at 2599.190 kb on - strand, within Echvi_2176at 2599.397 kb on + strandat 2599.484 kb on - strand, within Echvi_2177at 2599.514 kb on - strand, within Echvi_2177at 2599.525 kb on + strand, within Echvi_2177at 2599.626 kb on - strand, within Echvi_2177at 2599.680 kb on - strand, within Echvi_2177at 2599.732 kb on - strand, within Echvi_2177at 2599.732 kb on - strand, within Echvi_2177at 2599.819 kb on - strand, within Echvi_2177at 2599.831 kb on - strand, within Echvi_2177at 2599.950 kb on - strand, within Echvi_2177at 2599.953 kb on - strand, within Echvi_2177at 2599.978 kb on - strand, within Echvi_2177at 2600.069 kb on + strand, within Echvi_2177at 2600.069 kb on + strand, within Echvi_2177at 2600.070 kb on - strand, within Echvi_2177at 2600.077 kb on + strand, within Echvi_2177at 2600.078 kb on - strand, within Echvi_2177at 2600.081 kb on + strand, within Echvi_2177at 2600.105 kb on + strand, within Echvi_2177at 2600.106 kb on - strand, within Echvi_2177at 2600.200 kb on - strand, within Echvi_2177at 2600.200 kb on - strand, within Echvi_2177at 2600.201 kb on + strand, within Echvi_2177at 2600.201 kb on + strand, within Echvi_2177at 2600.201 kb on + strand, within Echvi_2177at 2600.201 kb on + strand, within Echvi_2177at 2600.202 kb on - strand, within Echvi_2177at 2600.202 kb on - strand, within Echvi_2177at 2600.247 kb on - strand, within Echvi_2177at 2600.399 kb on + strandat 2600.431 kb on + strandat 2600.496 kb on + strandat 2600.508 kb on + strandat 2600.508 kb on + strandat 2600.572 kb on + strandat 2600.573 kb on - strandat 2600.597 kb on - strandat 2600.622 kb on + strandat 2600.623 kb on - strandat 2600.949 kb on + strand, within Echvi_2178at 2600.949 kb on + strand, within Echvi_2178at 2600.950 kb on - strand, within Echvi_2178at 2600.950 kb on - strand, within Echvi_2178at 2600.990 kb on - strand, within Echvi_2178at 2600.990 kb on - strand, within Echvi_2178at 2601.018 kb on + strand, within Echvi_2178at 2601.059 kb on - strand, within Echvi_2178at 2601.078 kb on + strand, within Echvi_2178at 2601.079 kb on - strand, within Echvi_2178at 2601.079 kb on - strand, within Echvi_2178at 2601.088 kb on - strand, within Echvi_2178at 2601.097 kb on + strand, within Echvi_2178at 2601.098 kb on - strand, within Echvi_2178at 2601.178 kb on - strand, within Echvi_2178at 2601.178 kb on - strand, within Echvi_2178at 2601.201 kb on + strand, within Echvi_2178at 2601.201 kb on + strand, within Echvi_2178at 2601.202 kb on - strand, within Echvi_2178at 2601.202 kb on - strand, within Echvi_2178at 2601.202 kb on - strand, within Echvi_2178at 2601.202 kb on - strand, within Echvi_2178at 2601.202 kb on - strand, within Echvi_2178at 2601.202 kb on - strand, within Echvi_2178at 2601.257 kb on - strand, within Echvi_2178at 2601.257 kb on - strand, within Echvi_2178at 2601.257 kb on - strand, within Echvi_2178at 2601.271 kb on + strand, within Echvi_2178at 2601.330 kb on + strand, within Echvi_2178at 2601.330 kb on + strand, within Echvi_2178at 2601.331 kb on - strand, within Echvi_2178at 2601.352 kb on - strand, within Echvi_2178

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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2,598,349 - +0.1
2,598,374 + +0.4
2,598,584 - -1.3
2,598,638 + -2.0
2,598,712 + Echvi_2176 0.15 +1.2
2,598,751 + Echvi_2176 0.21 -0.3
2,598,752 - Echvi_2176 0.21 +0.7
2,598,752 - Echvi_2176 0.21 -0.7
2,598,754 - Echvi_2176 0.22 -0.2
2,598,757 + Echvi_2176 0.22 +0.0
2,598,757 + Echvi_2176 0.22 -2.2
2,598,757 + Echvi_2176 0.22 -0.1
2,598,758 - Echvi_2176 0.22 +0.5
2,598,758 - Echvi_2176 0.22 +0.1
2,598,758 - Echvi_2176 0.22 +0.4
2,598,759 + Echvi_2176 0.22 +1.9
2,598,759 + Echvi_2176 0.22 +0.8
2,598,759 + Echvi_2176 0.22 -0.4
2,598,759 + Echvi_2176 0.22 +1.9
2,598,759 + Echvi_2176 0.22 -0.6
2,598,759 + Echvi_2176 0.22 -0.9
2,598,759 + Echvi_2176 0.22 -0.7
2,598,760 - Echvi_2176 0.23 -0.3
2,598,760 - Echvi_2176 0.23 -0.3
2,598,760 - Echvi_2176 0.23 -0.7
2,598,760 - Echvi_2176 0.23 +0.5
2,598,760 - Echvi_2176 0.23 +0.7
2,598,760 - Echvi_2176 0.23 +0.1
2,598,761 + Echvi_2176 0.23 -0.1
2,598,761 + Echvi_2176 0.23 +0.1
2,598,761 + Echvi_2176 0.23 -0.3
2,598,761 + Echvi_2176 0.23 -0.9
2,598,761 + Echvi_2176 0.23 -0.0
2,598,761 + Echvi_2176 0.23 -0.9
2,598,762 - Echvi_2176 0.23 +0.0
2,598,762 - Echvi_2176 0.23 +0.1
2,598,762 - Echvi_2176 0.23 -0.9
2,598,763 + Echvi_2176 0.23 -0.3
2,598,847 + Echvi_2176 0.36 +0.2
2,598,847 + Echvi_2176 0.36 -0.7
2,598,886 + Echvi_2176 0.42 -1.0
2,598,886 + Echvi_2176 0.42 +0.6
2,598,886 + Echvi_2176 0.42 -0.3
2,598,887 - Echvi_2176 0.42 -0.8
2,598,887 - Echvi_2176 0.42 -1.7
2,598,960 - Echvi_2176 0.53 -0.1
2,598,994 + Echvi_2176 0.59 -1.3
2,599,000 - Echvi_2176 0.60 +2.0
2,599,115 + Echvi_2176 0.77 +0.4
2,599,115 + Echvi_2176 0.77 -0.2
2,599,163 + Echvi_2176 0.85 +0.3
2,599,186 + Echvi_2176 0.88 +0.6
2,599,187 - Echvi_2176 0.88 -1.3
2,599,190 - Echvi_2176 0.89 -0.6
2,599,397 + -1.2
2,599,484 - Echvi_2177 0.13 -0.6
2,599,514 - Echvi_2177 0.16 +0.7
2,599,525 + Echvi_2177 0.17 +1.5
2,599,626 - Echvi_2177 0.27 +1.5
2,599,680 - Echvi_2177 0.32 +1.2
2,599,732 - Echvi_2177 0.37 +0.3
2,599,732 - Echvi_2177 0.37 +0.6
2,599,819 - Echvi_2177 0.45 +0.1
2,599,831 - Echvi_2177 0.46 -0.4
2,599,950 - Echvi_2177 0.57 -0.6
2,599,953 - Echvi_2177 0.58 -0.3
2,599,978 - Echvi_2177 0.60 -0.0
2,600,069 + Echvi_2177 0.69 +1.5
2,600,069 + Echvi_2177 0.69 +0.8
2,600,070 - Echvi_2177 0.69 +0.3
2,600,077 + Echvi_2177 0.70 -1.1
2,600,078 - Echvi_2177 0.70 +0.9
2,600,081 + Echvi_2177 0.70 +0.9
2,600,105 + Echvi_2177 0.72 +1.4
2,600,106 - Echvi_2177 0.72 -0.8
2,600,200 - Echvi_2177 0.81 -1.6
2,600,200 - Echvi_2177 0.81 -0.3
2,600,201 + Echvi_2177 0.81 -0.4
2,600,201 + Echvi_2177 0.81 +1.1
2,600,201 + Echvi_2177 0.81 +1.4
2,600,201 + Echvi_2177 0.81 +0.7
2,600,202 - Echvi_2177 0.81 -0.3
2,600,202 - Echvi_2177 0.81 -0.4
2,600,247 - Echvi_2177 0.86 +1.6
2,600,399 + -0.3
2,600,431 + -0.4
2,600,496 + -1.6
2,600,508 + +1.8
2,600,508 + +0.2
2,600,572 + -0.6
2,600,573 - +0.9
2,600,597 - +0.2
2,600,622 + +0.7
2,600,623 - -1.9
2,600,949 + Echvi_2178 0.15 -0.1
2,600,949 + Echvi_2178 0.15 -0.5
2,600,950 - Echvi_2178 0.15 +0.9
2,600,950 - Echvi_2178 0.15 +0.4
2,600,990 - Echvi_2178 0.16 +1.6
2,600,990 - Echvi_2178 0.16 -0.6
2,601,018 + Echvi_2178 0.17 +0.1
2,601,059 - Echvi_2178 0.18 +0.9
2,601,078 + Echvi_2178 0.19 +0.6
2,601,079 - Echvi_2178 0.19 -0.7
2,601,079 - Echvi_2178 0.19 +1.0
2,601,088 - Echvi_2178 0.19 -1.6
2,601,097 + Echvi_2178 0.19 -0.4
2,601,098 - Echvi_2178 0.19 +0.8
2,601,178 - Echvi_2178 0.22 +1.5
2,601,178 - Echvi_2178 0.22 -0.3
2,601,201 + Echvi_2178 0.22 +0.2
2,601,201 + Echvi_2178 0.22 +1.2
2,601,202 - Echvi_2178 0.22 -1.0
2,601,202 - Echvi_2178 0.22 +1.4
2,601,202 - Echvi_2178 0.22 +0.1
2,601,202 - Echvi_2178 0.22 +2.0
2,601,202 - Echvi_2178 0.22 +0.9
2,601,202 - Echvi_2178 0.22 -0.5
2,601,257 - Echvi_2178 0.24 -1.5
2,601,257 - Echvi_2178 0.24 -0.1
2,601,257 - Echvi_2178 0.24 +0.8
2,601,271 + Echvi_2178 0.24 -0.3
2,601,330 + Echvi_2178 0.26 -0.1
2,601,330 + Echvi_2178 0.26 -1.8
2,601,331 - Echvi_2178 0.26 -0.1
2,601,352 - Echvi_2178 0.27 -0.0

Or see this region's nucleotide sequence