Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1437 and Echvi_1438 are separated by 323 nucleotides Echvi_1438 and Echvi_1439 are separated by 18 nucleotides Echvi_1439 and Echvi_1440 are separated by 31 nucleotides
Echvi_1437: Echvi_1437 - Inner membrane protein involved in colicin E2 resistance, at 1,649,380 to 1,650,729
_1437
Echvi_1438: Echvi_1438 - hypothetical protein, at 1,651,053 to 1,651,604
_1438
Echvi_1439: Echvi_1439 - Choline dehydrogenase and related flavoproteins, at 1,651,623 to 1,653,323
_1439
Echvi_1440: Echvi_1440 - hypothetical protein, at 1,653,355 to 1,654,353
_1440
Position (kb)
1651
1652
1653
1654 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1650.670 kb on + strand at 1650.670 kb on + strand at 1650.671 kb on - strand at 1650.685 kb on - strand at 1650.694 kb on + strand at 1650.724 kb on - strand at 1650.737 kb on - strand at 1650.834 kb on + strand at 1650.834 kb on + strand at 1650.857 kb on + strand at 1650.858 kb on - strand at 1650.858 kb on - strand at 1650.878 kb on + strand at 1650.920 kb on + strand at 1650.920 kb on + strand at 1650.921 kb on - strand at 1650.921 kb on - strand at 1650.921 kb on - strand at 1650.921 kb on - strand at 1650.921 kb on - strand at 1650.921 kb on - strand at 1650.921 kb on - strand at 1650.923 kb on - strand at 1651.035 kb on + strand at 1651.111 kb on + strand, within Echvi_1438 at 1651.275 kb on - strand, within Echvi_1438 at 1651.275 kb on - strand, within Echvi_1438 at 1651.300 kb on - strand, within Echvi_1438 at 1651.341 kb on + strand, within Echvi_1438 at 1651.342 kb on - strand, within Echvi_1438 at 1651.342 kb on - strand, within Echvi_1438 at 1651.342 kb on - strand, within Echvi_1438 at 1651.399 kb on + strand, within Echvi_1438 at 1651.399 kb on + strand, within Echvi_1438 at 1651.400 kb on - strand, within Echvi_1438 at 1651.422 kb on + strand, within Echvi_1438 at 1651.423 kb on - strand, within Echvi_1438 at 1651.441 kb on + strand, within Echvi_1438 at 1651.465 kb on - strand, within Echvi_1438 at 1651.502 kb on + strand, within Echvi_1438 at 1651.503 kb on - strand, within Echvi_1438 at 1651.503 kb on - strand, within Echvi_1438 at 1651.503 kb on - strand, within Echvi_1438 at 1651.607 kb on + strand at 1651.608 kb on - strand at 1651.660 kb on - strand at 1651.810 kb on + strand, within Echvi_1439 at 1651.926 kb on + strand, within Echvi_1439 at 1651.926 kb on + strand, within Echvi_1439 at 1651.926 kb on + strand, within Echvi_1439 at 1651.926 kb on + strand, within Echvi_1439 at 1651.927 kb on - strand, within Echvi_1439 at 1651.927 kb on - strand, within Echvi_1439 at 1651.928 kb on + strand, within Echvi_1439 at 1651.928 kb on + strand, within Echvi_1439 at 1651.928 kb on + strand, within Echvi_1439 at 1651.936 kb on + strand, within Echvi_1439 at 1651.937 kb on - strand, within Echvi_1439 at 1652.019 kb on - strand, within Echvi_1439 at 1652.074 kb on - strand, within Echvi_1439 at 1652.075 kb on + strand, within Echvi_1439 at 1652.076 kb on - strand, within Echvi_1439 at 1652.076 kb on - strand, within Echvi_1439 at 1652.094 kb on + strand, within Echvi_1439 at 1652.100 kb on + strand, within Echvi_1439 at 1652.100 kb on + strand, within Echvi_1439 at 1652.100 kb on + strand, within Echvi_1439 at 1652.101 kb on - strand, within Echvi_1439 at 1652.218 kb on + strand, within Echvi_1439 at 1652.246 kb on + strand, within Echvi_1439 at 1652.247 kb on - strand, within Echvi_1439 at 1652.247 kb on - strand, within Echvi_1439 at 1652.344 kb on - strand, within Echvi_1439 at 1652.344 kb on - strand, within Echvi_1439 at 1652.348 kb on + strand, within Echvi_1439 at 1652.348 kb on + strand, within Echvi_1439 at 1652.355 kb on - strand, within Echvi_1439 at 1652.403 kb on - strand, within Echvi_1439 at 1652.433 kb on + strand, within Echvi_1439 at 1652.494 kb on - strand, within Echvi_1439 at 1652.502 kb on + strand, within Echvi_1439 at 1652.503 kb on - strand, within Echvi_1439 at 1652.503 kb on - strand, within Echvi_1439 at 1652.604 kb on - strand, within Echvi_1439 at 1652.641 kb on - strand, within Echvi_1439 at 1652.641 kb on - strand, within Echvi_1439 at 1652.685 kb on + strand at 1652.686 kb on - strand, within Echvi_1439 at 1652.686 kb on - strand, within Echvi_1439 at 1652.692 kb on - strand, within Echvi_1439 at 1652.715 kb on + strand, within Echvi_1439 at 1652.715 kb on + strand, within Echvi_1439 at 1652.719 kb on + strand, within Echvi_1439 at 1652.735 kb on + strand, within Echvi_1439 at 1652.763 kb on + strand, within Echvi_1439 at 1652.764 kb on - strand, within Echvi_1439 at 1652.767 kb on + strand, within Echvi_1439 at 1652.916 kb on + strand, within Echvi_1439 at 1652.916 kb on + strand, within Echvi_1439 at 1652.916 kb on + strand, within Echvi_1439 at 1652.916 kb on + strand, within Echvi_1439 at 1652.917 kb on - strand, within Echvi_1439 at 1652.929 kb on + strand, within Echvi_1439 at 1652.929 kb on + strand, within Echvi_1439 at 1652.945 kb on + strand, within Echvi_1439 at 1652.946 kb on - strand, within Echvi_1439 at 1652.946 kb on - strand, within Echvi_1439 at 1652.946 kb on - strand, within Echvi_1439 at 1652.950 kb on + strand, within Echvi_1439 at 1652.951 kb on - strand, within Echvi_1439 at 1652.951 kb on - strand, within Echvi_1439 at 1652.951 kb on - strand, within Echvi_1439 at 1652.959 kb on - strand, within Echvi_1439 at 1653.018 kb on - strand, within Echvi_1439 at 1653.018 kb on - strand, within Echvi_1439 at 1653.050 kb on - strand, within Echvi_1439 at 1653.050 kb on - strand, within Echvi_1439 at 1653.081 kb on + strand, within Echvi_1439 at 1653.087 kb on - strand, within Echvi_1439 at 1653.173 kb on + strand at 1653.174 kb on - strand at 1653.201 kb on + strand at 1653.201 kb on + strand at 1653.201 kb on + strand at 1653.201 kb on + strand at 1653.201 kb on + strand at 1653.202 kb on - strand at 1653.202 kb on - strand at 1653.202 kb on - strand at 1653.221 kb on + strand at 1653.255 kb on - strand at 1653.255 kb on - strand at 1653.259 kb on - strand at 1653.259 kb on - strand at 1653.259 kb on - strand at 1653.259 kb on - strand at 1653.259 kb on - strand at 1653.260 kb on + strand at 1653.347 kb on + strand at 1653.360 kb on + strand at 1653.361 kb on - strand at 1653.361 kb on - strand at 1653.362 kb on + strand at 1653.362 kb on + strand at 1653.362 kb on + strand at 1653.362 kb on + strand at 1653.363 kb on - strand at 1653.375 kb on + strand at 1653.393 kb on + strand at 1653.393 kb on + strand at 1653.394 kb on - strand at 1653.439 kb on - strand at 1653.503 kb on + strand, within Echvi_1440 at 1653.503 kb on + strand, within Echvi_1440 at 1653.504 kb on - strand, within Echvi_1440 at 1653.504 kb on - strand, within Echvi_1440 at 1653.510 kb on - strand, within Echvi_1440 at 1653.543 kb on + strand, within Echvi_1440 at 1653.575 kb on + strand, within Echvi_1440 at 1653.575 kb on + strand, within Echvi_1440 at 1653.575 kb on + strand, within Echvi_1440 at 1653.575 kb on + strand, within Echvi_1440 at 1653.576 kb on - strand, within Echvi_1440 at 1653.576 kb on - strand, within Echvi_1440 at 1653.576 kb on - strand, within Echvi_1440 at 1653.580 kb on - strand, within Echvi_1440 at 1653.617 kb on - strand, within Echvi_1440 at 1653.651 kb on + strand, within Echvi_1440 at 1653.651 kb on + strand, within Echvi_1440 at 1653.651 kb on + strand, within Echvi_1440 at 1653.652 kb on - strand, within Echvi_1440 at 1653.652 kb on - strand, within Echvi_1440 at 1653.662 kb on + strand, within Echvi_1440 at 1653.662 kb on + strand, within Echvi_1440 at 1653.663 kb on - strand, within Echvi_1440 at 1653.675 kb on + strand, within Echvi_1440 at 1653.693 kb on + strand, within Echvi_1440 at 1653.694 kb on - strand, within Echvi_1440 at 1653.741 kb on - strand, within Echvi_1440 at 1653.741 kb on - strand, within Echvi_1440 at 1653.741 kb on - strand, within Echvi_1440 at 1653.846 kb on - strand, within Echvi_1440 at 1653.846 kb on - strand, within Echvi_1440 at 1653.873 kb on + strand, within Echvi_1440 at 1653.905 kb on + strand, within Echvi_1440 at 1653.905 kb on + strand, within Echvi_1440 at 1653.906 kb on - strand, within Echvi_1440 at 1653.916 kb on - strand, within Echvi_1440 at 1653.956 kb on + strand, within Echvi_1440 at 1653.956 kb on + strand, within Echvi_1440 at 1653.965 kb on - strand, within Echvi_1440 at 1653.966 kb on + strand, within Echvi_1440 at 1653.966 kb on + strand, within Echvi_1440 at 1653.966 kb on + strand, within Echvi_1440 at 1653.966 kb on + strand, within Echvi_1440 at 1653.967 kb on - strand, within Echvi_1440 at 1653.998 kb on - strand, within Echvi_1440 at 1653.998 kb on - strand, within Echvi_1440 at 1653.998 kb on - strand, within Echvi_1440 at 1654.050 kb on + strand, within Echvi_1440 at 1654.051 kb on - strand, within Echvi_1440 at 1654.051 kb on - strand, within Echvi_1440 at 1654.143 kb on + strand, within Echvi_1440 at 1654.144 kb on - strand, within Echvi_1440 at 1654.144 kb on - strand, within Echvi_1440 at 1654.144 kb on - strand, within Echvi_1440 at 1654.169 kb on - strand, within Echvi_1440 at 1654.229 kb on + strand, within Echvi_1440 at 1654.230 kb on - strand, within Echvi_1440 at 1654.230 kb on - strand, within Echvi_1440 at 1654.230 kb on - strand, within Echvi_1440 at 1654.232 kb on - strand, within Echvi_1440 at 1654.248 kb on + strand, within Echvi_1440 at 1654.248 kb on + strand, within Echvi_1440 at 1654.249 kb on - strand, within Echvi_1440 at 1654.309 kb on + strand at 1654.319 kb on - strand at 1654.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 1,650,670 + -0.2 1,650,670 + +1.2 1,650,671 - -0.3 1,650,685 - +0.2 1,650,694 + +0.9 1,650,724 - -0.5 1,650,737 - -0.5 1,650,834 + +1.6 1,650,834 + +1.3 1,650,857 + +1.3 1,650,858 - -1.0 1,650,858 - -0.6 1,650,878 + -1.3 1,650,920 + +0.0 1,650,920 + -2.0 1,650,921 - -0.1 1,650,921 - -1.5 1,650,921 - +0.5 1,650,921 - +0.8 1,650,921 - -0.4 1,650,921 - +1.1 1,650,921 - -2.3 1,650,923 - +0.1 1,651,035 + +2.0 1,651,111 + Echvi_1438 0.11 +0.1 1,651,275 - Echvi_1438 0.40 +0.4 1,651,275 - Echvi_1438 0.40 +1.6 1,651,300 - Echvi_1438 0.45 -0.1 1,651,341 + Echvi_1438 0.52 -0.6 1,651,342 - Echvi_1438 0.52 +0.0 1,651,342 - Echvi_1438 0.52 -1.5 1,651,342 - Echvi_1438 0.52 -0.4 1,651,399 + Echvi_1438 0.63 -0.8 1,651,399 + Echvi_1438 0.63 +2.0 1,651,400 - Echvi_1438 0.63 +0.0 1,651,422 + Echvi_1438 0.67 +0.0 1,651,423 - Echvi_1438 0.67 +0.6 1,651,441 + Echvi_1438 0.70 +0.5 1,651,465 - Echvi_1438 0.75 -0.2 1,651,502 + Echvi_1438 0.81 +0.9 1,651,503 - Echvi_1438 0.82 +1.0 1,651,503 - Echvi_1438 0.82 -0.5 1,651,503 - Echvi_1438 0.82 -0.4 1,651,607 + +0.3 1,651,608 - -1.5 1,651,660 - -0.1 1,651,810 + Echvi_1439 0.11 -0.1 1,651,926 + Echvi_1439 0.18 -0.1 1,651,926 + Echvi_1439 0.18 +0.8 1,651,926 + Echvi_1439 0.18 +1.6 1,651,926 + Echvi_1439 0.18 -0.3 1,651,927 - Echvi_1439 0.18 -1.4 1,651,927 - Echvi_1439 0.18 +1.3 1,651,928 + Echvi_1439 0.18 +2.0 1,651,928 + Echvi_1439 0.18 +0.8 1,651,928 + Echvi_1439 0.18 +2.5 1,651,936 + Echvi_1439 0.18 -0.5 1,651,937 - Echvi_1439 0.18 +0.3 1,652,019 - Echvi_1439 0.23 +1.8 1,652,074 - Echvi_1439 0.27 +0.5 1,652,075 + Echvi_1439 0.27 +0.8 1,652,076 - Echvi_1439 0.27 -0.2 1,652,076 - Echvi_1439 0.27 +0.7 1,652,094 + Echvi_1439 0.28 +1.0 1,652,100 + Echvi_1439 0.28 -2.0 1,652,100 + Echvi_1439 0.28 +1.0 1,652,100 + Echvi_1439 0.28 +0.0 1,652,101 - Echvi_1439 0.28 -0.0 1,652,218 + Echvi_1439 0.35 +0.8 1,652,246 + Echvi_1439 0.37 +0.0 1,652,247 - Echvi_1439 0.37 -0.2 1,652,247 - Echvi_1439 0.37 +0.5 1,652,344 - Echvi_1439 0.42 +0.0 1,652,344 - Echvi_1439 0.42 +0.0 1,652,348 + Echvi_1439 0.43 -0.1 1,652,348 + Echvi_1439 0.43 -1.4 1,652,355 - Echvi_1439 0.43 +1.3 1,652,403 - Echvi_1439 0.46 +0.8 1,652,433 + Echvi_1439 0.48 +0.1 1,652,494 - Echvi_1439 0.51 -0.6 1,652,502 + Echvi_1439 0.52 +0.8 1,652,503 - Echvi_1439 0.52 -0.3 1,652,503 - Echvi_1439 0.52 -0.4 1,652,604 - Echvi_1439 0.58 -0.5 1,652,641 - Echvi_1439 0.60 -0.8 1,652,641 - Echvi_1439 0.60 +3.0 1,652,685 + +0.5 1,652,686 - Echvi_1439 0.62 +0.5 1,652,686 - Echvi_1439 0.62 -0.3 1,652,692 - Echvi_1439 0.63 -0.5 1,652,715 + Echvi_1439 0.64 -0.1 1,652,715 + Echvi_1439 0.64 -1.0 1,652,719 + Echvi_1439 0.64 +0.9 1,652,735 + Echvi_1439 0.65 -0.4 1,652,763 + Echvi_1439 0.67 -1.1 1,652,764 - Echvi_1439 0.67 -0.4 1,652,767 + Echvi_1439 0.67 +0.5 1,652,916 + Echvi_1439 0.76 +0.8 1,652,916 + Echvi_1439 0.76 +0.5 1,652,916 + Echvi_1439 0.76 +0.4 1,652,916 + Echvi_1439 0.76 -0.3 1,652,917 - Echvi_1439 0.76 -0.4 1,652,929 + Echvi_1439 0.77 +1.0 1,652,929 + Echvi_1439 0.77 -1.0 1,652,945 + Echvi_1439 0.78 +0.3 1,652,946 - Echvi_1439 0.78 -0.3 1,652,946 - Echvi_1439 0.78 -1.2 1,652,946 - Echvi_1439 0.78 +0.9 1,652,950 + Echvi_1439 0.78 -1.2 1,652,951 - Echvi_1439 0.78 +0.7 1,652,951 - Echvi_1439 0.78 +0.6 1,652,951 - Echvi_1439 0.78 -0.1 1,652,959 - Echvi_1439 0.79 -0.3 1,653,018 - Echvi_1439 0.82 -0.5 1,653,018 - Echvi_1439 0.82 +0.3 1,653,050 - Echvi_1439 0.84 +1.0 1,653,050 - Echvi_1439 0.84 +0.3 1,653,081 + Echvi_1439 0.86 +1.4 1,653,087 - Echvi_1439 0.86 +0.0 1,653,173 + +0.8 1,653,174 - +0.7 1,653,201 + -2.0 1,653,201 + +0.3 1,653,201 + -0.7 1,653,201 + -0.3 1,653,201 + +1.8 1,653,202 - +1.0 1,653,202 - -1.1 1,653,202 - -0.8 1,653,221 + +0.0 1,653,255 - -1.0 1,653,255 - +0.5 1,653,259 - +0.0 1,653,259 - -1.2 1,653,259 - -0.1 1,653,259 - -1.3 1,653,259 - -0.5 1,653,260 + -0.9 1,653,347 + -1.0 1,653,360 + -0.8 1,653,361 - -0.5 1,653,361 - +0.5 1,653,362 + -0.6 1,653,362 + +0.6 1,653,362 + +0.6 1,653,362 + +2.2 1,653,363 - -1.4 1,653,375 + -2.4 1,653,393 + +1.2 1,653,393 + +0.1 1,653,394 - +0.0 1,653,439 - -1.2 1,653,503 + Echvi_1440 0.15 +0.8 1,653,503 + Echvi_1440 0.15 -1.9 1,653,504 - Echvi_1440 0.15 +1.3 1,653,504 - Echvi_1440 0.15 +0.5 1,653,510 - Echvi_1440 0.16 -1.0 1,653,543 + Echvi_1440 0.19 +0.6 1,653,575 + Echvi_1440 0.22 +0.5 1,653,575 + Echvi_1440 0.22 +2.0 1,653,575 + Echvi_1440 0.22 +0.5 1,653,575 + Echvi_1440 0.22 -0.1 1,653,576 - Echvi_1440 0.22 +0.2 1,653,576 - Echvi_1440 0.22 +0.9 1,653,576 - Echvi_1440 0.22 -0.9 1,653,580 - Echvi_1440 0.23 +0.6 1,653,617 - Echvi_1440 0.26 +0.6 1,653,651 + Echvi_1440 0.30 -0.2 1,653,651 + Echvi_1440 0.30 -0.3 1,653,651 + Echvi_1440 0.30 -2.1 1,653,652 - Echvi_1440 0.30 -1.5 1,653,652 - Echvi_1440 0.30 +0.6 1,653,662 + Echvi_1440 0.31 +1.5 1,653,662 + Echvi_1440 0.31 -0.0 1,653,663 - Echvi_1440 0.31 +0.8 1,653,675 + Echvi_1440 0.32 +1.3 1,653,693 + Echvi_1440 0.34 +2.3 1,653,694 - Echvi_1440 0.34 +0.7 1,653,741 - Echvi_1440 0.39 +0.7 1,653,741 - Echvi_1440 0.39 +0.9 1,653,741 - Echvi_1440 0.39 -0.0 1,653,846 - Echvi_1440 0.49 +0.4 1,653,846 - Echvi_1440 0.49 -1.4 1,653,873 + Echvi_1440 0.52 -0.4 1,653,905 + Echvi_1440 0.55 -0.2 1,653,905 + Echvi_1440 0.55 -1.2 1,653,906 - Echvi_1440 0.55 -0.4 1,653,916 - Echvi_1440 0.56 +0.4 1,653,956 + Echvi_1440 0.60 +0.7 1,653,956 + Echvi_1440 0.60 -1.1 1,653,965 - Echvi_1440 0.61 +0.0 1,653,966 + Echvi_1440 0.61 -0.3 1,653,966 + Echvi_1440 0.61 -1.1 1,653,966 + Echvi_1440 0.61 -0.3 1,653,966 + Echvi_1440 0.61 -2.4 1,653,967 - Echvi_1440 0.61 +0.8 1,653,998 - Echvi_1440 0.64 -1.5 1,653,998 - Echvi_1440 0.64 +1.3 1,653,998 - Echvi_1440 0.64 -1.8 1,654,050 + Echvi_1440 0.70 -0.1 1,654,051 - Echvi_1440 0.70 +0.3 1,654,051 - Echvi_1440 0.70 +1.0 1,654,143 + Echvi_1440 0.79 +0.0 1,654,144 - Echvi_1440 0.79 -0.1 1,654,144 - Echvi_1440 0.79 +0.7 1,654,144 - Echvi_1440 0.79 -0.8 1,654,169 - Echvi_1440 0.81 +0.0 1,654,229 + Echvi_1440 0.87 -0.3 1,654,230 - Echvi_1440 0.88 +0.5 1,654,230 - Echvi_1440 0.88 -0.8 1,654,230 - Echvi_1440 0.88 -0.1 1,654,232 - Echvi_1440 0.88 +1.4 1,654,248 + Echvi_1440 0.89 -0.5 1,654,248 + Echvi_1440 0.89 -1.5 1,654,249 - Echvi_1440 0.89 -0.0 1,654,309 + -0.5 1,654,319 - -1.2 1,654,319 - -0.3
Or see this region's nucleotide sequence