Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0750

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0748 and Echvi_0749 are separated by 86 nucleotidesEchvi_0749 and Echvi_0750 are separated by 100 nucleotidesEchvi_0750 and Echvi_0751 are separated by 115 nucleotides Echvi_0748: Echvi_0748 - dihydroorotase, multifunctional complex type, at 838,910 to 840,259 _0748 Echvi_0749: Echvi_0749 - tRNA, at 840,346 to 840,422 _0749 Echvi_0750: Echvi_0750 - hypothetical protein, at 840,523 to 840,672 _0750 Echvi_0751: Echvi_0751 - glycogen debranching enzyme, archaeal type, putative, at 840,788 to 842,704 _0751 Position (kb) 840 841Strain fitness (log2 ratio) -2 -1 0 1 2at 840.502 kb on + strandat 840.529 kb on - strandat 840.595 kb on + strand, within Echvi_0750at 840.595 kb on + strand, within Echvi_0750at 840.595 kb on + strand, within Echvi_0750at 840.595 kb on + strand, within Echvi_0750at 840.596 kb on - strand, within Echvi_0750at 840.596 kb on - strand, within Echvi_0750at 840.596 kb on - strand, within Echvi_0750at 840.671 kb on - strandat 840.674 kb on - strandat 840.737 kb on + strandat 840.794 kb on + strandat 840.833 kb on + strandat 840.878 kb on + strandat 840.879 kb on - strandat 840.897 kb on + strandat 840.897 kb on + strandat 840.897 kb on + strandat 840.904 kb on + strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.905 kb on - strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.969 kb on + strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.970 kb on - strandat 840.973 kb on - strandat 840.973 kb on - strandat 841.034 kb on - strand, within Echvi_0751at 841.037 kb on + strand, within Echvi_0751at 841.037 kb on + strand, within Echvi_0751at 841.050 kb on - strand, within Echvi_0751at 841.066 kb on + strand, within Echvi_0751at 841.067 kb on - strand, within Echvi_0751at 841.277 kb on + strand, within Echvi_0751at 841.278 kb on - strand, within Echvi_0751at 841.397 kb on + strand, within Echvi_0751at 841.397 kb on + strand, within Echvi_0751at 841.398 kb on - strand, within Echvi_0751at 841.398 kb on - strand, within Echvi_0751at 841.401 kb on - strand, within Echvi_0751at 841.412 kb on + strand, within Echvi_0751at 841.457 kb on + strand, within Echvi_0751at 841.458 kb on - strand, within Echvi_0751at 841.458 kb on - strand, within Echvi_0751at 841.458 kb on - strand, within Echvi_0751at 841.630 kb on + strand, within Echvi_0751

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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840,502 + -0.1
840,529 - -0.8
840,595 + Echvi_0750 0.48 -1.1
840,595 + Echvi_0750 0.48 -1.6
840,595 + Echvi_0750 0.48 -1.9
840,595 + Echvi_0750 0.48 -0.0
840,596 - Echvi_0750 0.49 -2.6
840,596 - Echvi_0750 0.49 -1.0
840,596 - Echvi_0750 0.49 +1.4
840,671 - -0.6
840,674 - -0.2
840,737 + -0.2
840,794 + -0.2
840,833 + -1.3
840,878 + +2.0
840,879 - -0.9
840,897 + -0.5
840,897 + +1.3
840,897 + -0.9
840,904 + -1.7
840,905 - -1.1
840,905 - +0.7
840,905 - -1.5
840,905 - -0.4
840,905 - -0.2
840,969 + +0.6
840,969 + -1.0
840,969 + -0.4
840,969 + -0.5
840,969 + -1.0
840,969 + +0.4
840,969 + +1.2
840,969 + +0.9
840,969 + +0.4
840,970 - -1.3
840,970 - +0.4
840,970 - -2.0
840,970 - -0.0
840,970 - -1.1
840,970 - +0.4
840,973 - +0.9
840,973 - -0.5
841,034 - Echvi_0751 0.13 +0.4
841,037 + Echvi_0751 0.13 -1.3
841,037 + Echvi_0751 0.13 -0.9
841,050 - Echvi_0751 0.14 -0.2
841,066 + Echvi_0751 0.15 -2.3
841,067 - Echvi_0751 0.15 +0.8
841,277 + Echvi_0751 0.26 +0.4
841,278 - Echvi_0751 0.26 -0.9
841,397 + Echvi_0751 0.32 -1.5
841,397 + Echvi_0751 0.32 +0.5
841,398 - Echvi_0751 0.32 +0.7
841,398 - Echvi_0751 0.32 +1.1
841,401 - Echvi_0751 0.32 -1.0
841,412 + Echvi_0751 0.33 +2.0
841,457 + Echvi_0751 0.35 +0.8
841,458 - Echvi_0751 0.35 +0.3
841,458 - Echvi_0751 0.35 +0.9
841,458 - Echvi_0751 0.35 -0.9
841,630 + Echvi_0751 0.44 +0.0

Or see this region's nucleotide sequence