Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0564 and Echvi_0565 are separated by 231 nucleotides Echvi_0565 and Echvi_0566 are separated by 590 nucleotides
Echvi_0564: Echvi_0564 - ribosomal protein S12 methylthiotransferase RimO, at 637,698 to 639,011
_0564
Echvi_0565: Echvi_0565 - Predicted dehydrogenases and related proteins, at 639,243 to 640,709
_0565
Echvi_0566: Echvi_0566 - TonB-dependent receptor for glucose (SusC-like) <small>(from data)</small>, at 641,300 to 644,539
_0566
Position (kb) 639
640
641 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 638.246 kb on + strand, within Echvi_0564 at 638.247 kb on - strand, within Echvi_0564 at 638.259 kb on - strand, within Echvi_0564 at 638.312 kb on + strand, within Echvi_0564 at 638.324 kb on - strand, within Echvi_0564 at 638.324 kb on - strand, within Echvi_0564 at 638.416 kb on + strand, within Echvi_0564 at 638.416 kb on + strand, within Echvi_0564 at 638.416 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.581 kb on + strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.582 kb on - strand, within Echvi_0564 at 638.587 kb on + strand, within Echvi_0564 at 638.587 kb on + strand, within Echvi_0564 at 638.633 kb on + strand, within Echvi_0564 at 638.633 kb on + strand, within Echvi_0564 at 638.633 kb on + strand, within Echvi_0564 at 638.634 kb on - strand, within Echvi_0564 at 638.634 kb on - strand, within Echvi_0564 at 638.658 kb on + strand, within Echvi_0564 at 638.659 kb on - strand, within Echvi_0564 at 638.728 kb on + strand, within Echvi_0564 at 638.729 kb on - strand, within Echvi_0564 at 638.755 kb on + strand, within Echvi_0564 at 638.811 kb on + strand, within Echvi_0564 at 638.812 kb on - strand, within Echvi_0564 at 638.812 kb on - strand, within Echvi_0564 at 638.812 kb on - strand, within Echvi_0564 at 638.850 kb on - strand, within Echvi_0564 at 638.858 kb on + strand, within Echvi_0564 at 638.858 kb on + strand, within Echvi_0564 at 638.859 kb on - strand at 638.867 kb on + strand, within Echvi_0564 at 638.870 kb on + strand, within Echvi_0564 at 638.870 kb on + strand, within Echvi_0564 at 638.979 kb on + strand at 638.980 kb on - strand at 638.980 kb on - strand at 639.044 kb on + strand at 639.061 kb on + strand at 639.063 kb on + strand at 639.064 kb on - strand at 639.064 kb on - strand at 639.094 kb on + strand at 639.126 kb on + strand at 639.126 kb on + strand at 639.233 kb on + strand at 639.233 kb on + strand at 639.234 kb on - strand at 639.235 kb on + strand at 639.235 kb on + strand at 639.277 kb on - strand at 639.281 kb on - strand at 639.353 kb on - strand at 639.353 kb on - strand at 639.372 kb on - strand at 639.372 kb on - strand at 639.390 kb on - strand, within Echvi_0565 at 639.391 kb on + strand, within Echvi_0565 at 639.392 kb on - strand, within Echvi_0565 at 639.418 kb on - strand, within Echvi_0565 at 639.497 kb on + strand, within Echvi_0565 at 639.591 kb on + strand, within Echvi_0565 at 639.591 kb on + strand, within Echvi_0565 at 639.591 kb on + strand, within Echvi_0565 at 639.592 kb on - strand, within Echvi_0565 at 639.592 kb on - strand, within Echvi_0565 at 639.611 kb on + strand, within Echvi_0565 at 639.612 kb on - strand, within Echvi_0565 at 639.615 kb on - strand, within Echvi_0565 at 639.710 kb on + strand, within Echvi_0565 at 639.710 kb on + strand, within Echvi_0565 at 639.711 kb on - strand, within Echvi_0565 at 639.711 kb on - strand, within Echvi_0565 at 639.711 kb on - strand, within Echvi_0565 at 639.711 kb on - strand, within Echvi_0565 at 639.767 kb on + strand, within Echvi_0565 at 639.801 kb on - strand, within Echvi_0565 at 639.856 kb on + strand, within Echvi_0565 at 639.857 kb on - strand, within Echvi_0565 at 639.857 kb on - strand, within Echvi_0565 at 639.872 kb on + strand, within Echvi_0565 at 639.908 kb on + strand, within Echvi_0565 at 639.918 kb on + strand, within Echvi_0565 at 639.918 kb on + strand, within Echvi_0565 at 639.918 kb on + strand, within Echvi_0565 at 639.919 kb on - strand, within Echvi_0565 at 639.919 kb on - strand, within Echvi_0565 at 639.919 kb on - strand, within Echvi_0565 at 639.939 kb on + strand, within Echvi_0565 at 639.939 kb on + strand, within Echvi_0565 at 639.939 kb on + strand, within Echvi_0565 at 639.939 kb on + strand, within Echvi_0565 at 639.939 kb on + strand, within Echvi_0565 at 639.939 kb on + strand, within Echvi_0565 at 639.940 kb on - strand, within Echvi_0565 at 639.940 kb on - strand, within Echvi_0565 at 639.940 kb on - strand, within Echvi_0565 at 639.996 kb on + strand, within Echvi_0565 at 639.996 kb on + strand, within Echvi_0565 at 639.996 kb on + strand, within Echvi_0565 at 639.996 kb on + strand, within Echvi_0565 at 639.996 kb on + strand, within Echvi_0565 at 639.997 kb on - strand, within Echvi_0565 at 639.997 kb on - strand, within Echvi_0565 at 640.009 kb on + strand, within Echvi_0565 at 640.014 kb on + strand, within Echvi_0565 at 640.019 kb on + strand, within Echvi_0565 at 640.020 kb on - strand, within Echvi_0565 at 640.020 kb on - strand, within Echvi_0565 at 640.039 kb on - strand, within Echvi_0565 at 640.067 kb on + strand, within Echvi_0565 at 640.274 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.301 kb on - strand, within Echvi_0565 at 640.301 kb on - strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.347 kb on + strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.420 kb on + strand, within Echvi_0565 at 640.420 kb on + strand, within Echvi_0565 at 640.421 kb on - strand, within Echvi_0565 at 640.477 kb on - strand, within Echvi_0565 at 640.714 kb on + strand at 640.716 kb on + strand at 640.717 kb on - strand at 640.910 kb on + strand at 640.928 kb on + strand at 640.932 kb on - strand at 640.951 kb on + strand at 641.046 kb on + strand at 641.054 kb on + strand at 641.055 kb on - strand at 641.090 kb on - strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.148 kb on - strand at 641.172 kb on - strand at 641.177 kb on + strand at 641.198 kb on + strand at 641.198 kb on + strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.225 kb on + strand at 641.245 kb on + strand at 641.245 kb on + strand at 641.277 kb on + strand at 641.278 kb on - strand at 641.284 kb on - strand at 641.287 kb on + strand at 641.293 kb on + strand at 641.350 kb on + strand at 641.398 kb on - strand at 641.455 kb on + strand at 641.455 kb on + strand at 641.455 kb on + strand at 641.456 kb on - strand at 641.456 kb on - strand at 641.508 kb on - strand at 641.520 kb on + strand at 641.521 kb on - strand at 641.521 kb on - strand at 641.533 kb on + strand at 641.558 kb on + strand at 641.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 638,246 + Echvi_0564 0.42 -1.9 638,247 - Echvi_0564 0.42 -0.4 638,259 - Echvi_0564 0.43 +2.6 638,312 + Echvi_0564 0.47 +0.4 638,324 - Echvi_0564 0.48 -1.8 638,324 - Echvi_0564 0.48 -1.4 638,416 + Echvi_0564 0.55 +0.0 638,416 + Echvi_0564 0.55 -0.6 638,416 + Echvi_0564 0.55 -1.5 638,581 + Echvi_0564 0.67 +0.1 638,581 + Echvi_0564 0.67 -0.1 638,581 + Echvi_0564 0.67 +0.2 638,581 + Echvi_0564 0.67 +1.0 638,581 + Echvi_0564 0.67 -0.5 638,581 + Echvi_0564 0.67 -0.7 638,581 + Echvi_0564 0.67 +0.0 638,581 + Echvi_0564 0.67 -0.5 638,582 - Echvi_0564 0.67 -0.2 638,582 - Echvi_0564 0.67 -0.7 638,582 - Echvi_0564 0.67 -1.2 638,582 - Echvi_0564 0.67 +0.2 638,582 - Echvi_0564 0.67 +0.6 638,582 - Echvi_0564 0.67 -0.3 638,582 - Echvi_0564 0.67 +1.3 638,582 - Echvi_0564 0.67 -0.6 638,582 - Echvi_0564 0.67 -1.7 638,582 - Echvi_0564 0.67 -0.0 638,582 - Echvi_0564 0.67 +1.9 638,587 + Echvi_0564 0.68 +0.3 638,587 + Echvi_0564 0.68 -1.4 638,633 + Echvi_0564 0.71 -1.1 638,633 + Echvi_0564 0.71 -0.6 638,633 + Echvi_0564 0.71 -0.1 638,634 - Echvi_0564 0.71 -1.4 638,634 - Echvi_0564 0.71 -0.8 638,658 + Echvi_0564 0.73 -0.2 638,659 - Echvi_0564 0.73 -1.7 638,728 + Echvi_0564 0.78 -1.0 638,729 - Echvi_0564 0.78 -0.4 638,755 + Echvi_0564 0.80 -0.4 638,811 + Echvi_0564 0.85 -2.3 638,812 - Echvi_0564 0.85 -0.1 638,812 - Echvi_0564 0.85 -0.3 638,812 - Echvi_0564 0.85 +0.4 638,850 - Echvi_0564 0.88 -1.4 638,858 + Echvi_0564 0.88 -0.8 638,858 + Echvi_0564 0.88 +1.0 638,859 - +0.4 638,867 + Echvi_0564 0.89 -0.4 638,870 + Echvi_0564 0.89 -0.3 638,870 + Echvi_0564 0.89 +0.3 638,979 + +0.4 638,980 - +2.3 638,980 - -0.0 639,044 + +0.6 639,061 + +0.4 639,063 + +1.4 639,064 - +0.7 639,064 - +1.0 639,094 + +1.2 639,126 + +2.4 639,126 + -0.6 639,233 + -2.2 639,233 + -1.4 639,234 - +0.5 639,235 + +0.4 639,235 + -0.0 639,277 - +0.2 639,281 - +1.5 639,353 - +1.0 639,353 - -0.2 639,372 - -0.4 639,372 - -0.6 639,390 - Echvi_0565 0.10 +0.7 639,391 + Echvi_0565 0.10 +1.1 639,392 - Echvi_0565 0.10 +0.8 639,418 - Echvi_0565 0.12 -1.7 639,497 + Echvi_0565 0.17 -0.7 639,591 + Echvi_0565 0.24 -0.2 639,591 + Echvi_0565 0.24 -1.2 639,591 + Echvi_0565 0.24 +0.2 639,592 - Echvi_0565 0.24 -0.5 639,592 - Echvi_0565 0.24 +1.8 639,611 + Echvi_0565 0.25 -0.7 639,612 - Echvi_0565 0.25 -0.0 639,615 - Echvi_0565 0.25 +0.1 639,710 + Echvi_0565 0.32 -1.0 639,710 + Echvi_0565 0.32 -0.9 639,711 - Echvi_0565 0.32 +1.6 639,711 - Echvi_0565 0.32 -0.7 639,711 - Echvi_0565 0.32 +1.2 639,711 - Echvi_0565 0.32 +1.1 639,767 + Echvi_0565 0.36 -0.4 639,801 - Echvi_0565 0.38 -1.4 639,856 + Echvi_0565 0.42 -2.0 639,857 - Echvi_0565 0.42 -2.4 639,857 - Echvi_0565 0.42 +0.6 639,872 + Echvi_0565 0.43 +0.2 639,908 + Echvi_0565 0.45 -0.5 639,918 + Echvi_0565 0.46 -0.1 639,918 + Echvi_0565 0.46 +1.2 639,918 + Echvi_0565 0.46 -0.5 639,919 - Echvi_0565 0.46 +1.2 639,919 - Echvi_0565 0.46 -1.8 639,919 - Echvi_0565 0.46 -0.5 639,939 + Echvi_0565 0.47 -0.6 639,939 + Echvi_0565 0.47 +0.1 639,939 + Echvi_0565 0.47 -1.4 639,939 + Echvi_0565 0.47 -0.2 639,939 + Echvi_0565 0.47 -0.9 639,939 + Echvi_0565 0.47 -2.5 639,940 - Echvi_0565 0.48 -1.2 639,940 - Echvi_0565 0.48 +0.4 639,940 - Echvi_0565 0.48 +1.1 639,996 + Echvi_0565 0.51 -0.4 639,996 + Echvi_0565 0.51 -1.0 639,996 + Echvi_0565 0.51 +0.1 639,996 + Echvi_0565 0.51 -0.5 639,996 + Echvi_0565 0.51 +0.3 639,997 - Echvi_0565 0.51 +0.8 639,997 - Echvi_0565 0.51 -1.6 640,009 + Echvi_0565 0.52 -2.0 640,014 + Echvi_0565 0.53 -0.7 640,019 + Echvi_0565 0.53 +0.0 640,020 - Echvi_0565 0.53 -0.5 640,020 - Echvi_0565 0.53 -0.6 640,039 - Echvi_0565 0.54 +2.1 640,067 + Echvi_0565 0.56 -2.4 640,274 + Echvi_0565 0.70 -1.0 640,300 + Echvi_0565 0.72 -2.3 640,300 + Echvi_0565 0.72 -1.6 640,300 + Echvi_0565 0.72 -1.2 640,301 - Echvi_0565 0.72 +1.6 640,301 - Echvi_0565 0.72 -0.3 640,302 + Echvi_0565 0.72 -1.5 640,302 + Echvi_0565 0.72 -1.0 640,302 + Echvi_0565 0.72 -1.6 640,302 + Echvi_0565 0.72 -1.4 640,302 + Echvi_0565 0.72 -2.3 640,302 + Echvi_0565 0.72 -4.4 640,303 - Echvi_0565 0.72 +0.4 640,303 - Echvi_0565 0.72 -0.4 640,303 - Echvi_0565 0.72 +0.5 640,303 - Echvi_0565 0.72 -0.4 640,303 - Echvi_0565 0.72 +0.8 640,347 + Echvi_0565 0.75 -0.9 640,348 - Echvi_0565 0.75 -1.2 640,348 - Echvi_0565 0.75 -0.2 640,348 - Echvi_0565 0.75 -0.1 640,348 - Echvi_0565 0.75 -0.2 640,348 - Echvi_0565 0.75 +0.7 640,420 + Echvi_0565 0.80 -0.9 640,420 + Echvi_0565 0.80 -2.0 640,421 - Echvi_0565 0.80 +0.2 640,477 - Echvi_0565 0.84 -0.9 640,714 + -2.2 640,716 + -3.1 640,717 - -1.1 640,910 + -2.8 640,928 + -2.6 640,932 - -0.9 640,951 + -2.1 641,046 + -5.0 641,054 + -2.5 641,055 - -0.2 641,090 - -0.4 641,120 + -2.6 641,120 + -0.9 641,120 + -3.5 641,120 + -1.0 641,148 - +0.4 641,172 - -0.9 641,177 + -3.2 641,198 + -2.7 641,198 + -0.0 641,204 - +0.2 641,204 - -0.3 641,204 - +0.4 641,204 - -0.7 641,225 + -3.1 641,245 + -0.4 641,245 + -2.8 641,277 + -1.2 641,278 - -1.1 641,284 - -2.2 641,287 + -2.1 641,293 + +1.4 641,350 + +2.0 641,398 - -1.5 641,455 + -0.9 641,455 + -0.0 641,455 + -0.6 641,456 - +0.4 641,456 - -0.3 641,508 - -1.1 641,520 + +0.5 641,521 - -0.3 641,521 - +0.4 641,533 + -1.2 641,558 + -0.6 641,599 - +0.2
Or see this region's nucleotide sequence