Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0324 and Echvi_0325 are separated by 712 nucleotides Echvi_0325 and Echvi_0326 are separated by 541 nucleotides
Echvi_0324: Echvi_0324 - Uncharacterized protein involved in methicillin resistance, at 338,576 to 339,670
_0324
Echvi_0325: Echvi_0325 - Predicted transcriptional regulator with C-terminal CBS domains, at 340,383 to 340,700
_0325
Echvi_0326: Echvi_0326 - Uncharacterized conserved protein (DUF2081)./Protein of unknown function DUF262., at 341,242 to 343,068
_0326
Position (kb) 340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.393 kb on - strand, within Echvi_0324 at 339.441 kb on + strand, within Echvi_0324 at 339.441 kb on + strand, within Echvi_0324 at 339.519 kb on + strand, within Echvi_0324 at 339.568 kb on + strand at 339.587 kb on + strand at 339.587 kb on + strand at 339.620 kb on - strand at 339.662 kb on - strand at 339.678 kb on + strand at 339.773 kb on + strand at 339.773 kb on + strand at 339.784 kb on - strand at 339.883 kb on - strand at 339.969 kb on + strand at 339.969 kb on + strand at 339.979 kb on + strand at 339.979 kb on + strand at 339.980 kb on - strand at 339.980 kb on - strand at 339.980 kb on - strand at 339.983 kb on + strand at 339.984 kb on - strand at 339.984 kb on - strand at 339.984 kb on - strand at 339.986 kb on + strand at 339.987 kb on - strand at 339.987 kb on - strand at 339.987 kb on - strand at 340.090 kb on + strand at 340.102 kb on + strand at 340.102 kb on + strand at 340.105 kb on - strand at 340.117 kb on + strand at 340.128 kb on + strand at 340.129 kb on - strand at 340.181 kb on - strand at 340.181 kb on - strand at 340.181 kb on - strand at 340.185 kb on + strand at 340.185 kb on + strand at 340.185 kb on + strand at 340.192 kb on - strand at 340.192 kb on - strand at 340.206 kb on + strand at 340.206 kb on + strand at 340.206 kb on + strand at 340.206 kb on + strand at 340.207 kb on - strand at 340.236 kb on - strand at 340.236 kb on - strand at 340.236 kb on - strand at 340.259 kb on + strand at 340.259 kb on + strand at 340.260 kb on - strand at 340.264 kb on - strand at 340.264 kb on - strand at 340.265 kb on + strand at 340.361 kb on + strand at 340.361 kb on + strand at 340.361 kb on + strand at 340.361 kb on + strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.362 kb on - strand at 340.365 kb on + strand at 340.366 kb on - strand at 340.366 kb on - strand at 340.374 kb on + strand at 340.375 kb on - strand at 340.414 kb on - strand at 340.423 kb on - strand, within Echvi_0325 at 340.423 kb on - strand, within Echvi_0325 at 340.497 kb on - strand, within Echvi_0325 at 340.628 kb on - strand, within Echvi_0325 at 340.663 kb on + strand, within Echvi_0325 at 340.663 kb on + strand, within Echvi_0325 at 340.664 kb on - strand, within Echvi_0325 at 340.664 kb on - strand at 340.814 kb on + strand at 340.873 kb on + strand at 340.873 kb on + strand at 340.895 kb on + strand at 340.963 kb on - strand at 340.992 kb on - strand at 341.064 kb on - strand at 341.124 kb on + strand at 341.125 kb on - strand at 341.141 kb on + strand at 341.144 kb on - strand at 341.167 kb on + strand at 341.167 kb on + strand at 341.172 kb on - strand at 341.198 kb on + strand at 341.234 kb on + strand at 341.244 kb on - strand at 341.245 kb on + strand at 341.245 kb on + strand at 341.246 kb on - strand at 341.288 kb on - strand at 341.324 kb on + strand at 341.324 kb on + strand at 341.325 kb on - strand at 341.426 kb on - strand, within Echvi_0326 at 341.442 kb on + strand, within Echvi_0326 at 341.443 kb on - strand, within Echvi_0326 at 341.487 kb on + strand, within Echvi_0326 at 341.488 kb on - strand, within Echvi_0326 at 341.571 kb on - strand, within Echvi_0326 at 341.572 kb on + strand, within Echvi_0326 at 341.572 kb on + strand, within Echvi_0326 at 341.573 kb on - strand, within Echvi_0326 at 341.573 kb on - strand, within Echvi_0326 at 341.573 kb on - strand, within Echvi_0326 at 341.573 kb on - strand, within Echvi_0326 at 341.636 kb on + strand, within Echvi_0326 at 341.637 kb on - strand, within Echvi_0326 at 341.637 kb on - strand, within Echvi_0326 at 341.647 kb on + strand, within Echvi_0326 at 341.647 kb on + strand, within Echvi_0326 at 341.648 kb on - strand, within Echvi_0326 at 341.648 kb on - strand, within Echvi_0326 at 341.669 kb on - strand, within Echvi_0326 at 341.669 kb on - strand, within Echvi_0326 at 341.669 kb on - strand, within Echvi_0326 at 341.669 kb on - strand, within Echvi_0326 at 341.672 kb on - strand, within Echvi_0326
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 339,393 - Echvi_0324 0.75 +0.4 339,441 + Echvi_0324 0.79 -0.9 339,441 + Echvi_0324 0.79 +0.4 339,519 + Echvi_0324 0.86 +0.9 339,568 + -0.1 339,587 + +1.7 339,587 + -0.2 339,620 - +0.6 339,662 - +0.9 339,678 + +0.8 339,773 + -0.1 339,773 + +0.4 339,784 - +0.3 339,883 - -0.4 339,969 + -0.4 339,969 + -0.4 339,979 + -1.4 339,979 + +1.6 339,980 - +0.5 339,980 - -1.1 339,980 - -0.0 339,983 + +0.3 339,984 - -0.6 339,984 - +0.4 339,984 - -0.5 339,986 + +0.7 339,987 - -1.1 339,987 - +0.6 339,987 - +0.9 340,090 + +0.1 340,102 + +1.1 340,102 + -0.5 340,105 - -1.0 340,117 + +0.9 340,128 + +1.5 340,129 - +0.3 340,181 - -0.1 340,181 - +0.9 340,181 - +0.4 340,185 + -1.6 340,185 + -0.9 340,185 + -0.3 340,192 - +1.9 340,192 - -0.6 340,206 + +1.0 340,206 + -1.5 340,206 + -0.2 340,206 + +0.8 340,207 - +0.7 340,236 - -0.3 340,236 - +0.2 340,236 - +0.0 340,259 + -1.0 340,259 + +0.6 340,260 - -0.2 340,264 - -0.8 340,264 - -2.2 340,265 + +0.6 340,361 + -0.1 340,361 + +0.0 340,361 + +0.5 340,361 + +0.7 340,362 - +0.4 340,362 - -0.1 340,362 - -1.4 340,362 - +1.4 340,362 - -0.2 340,365 + -0.4 340,366 - +1.8 340,366 - +0.2 340,374 + -1.6 340,375 - -1.3 340,414 - +0.2 340,423 - Echvi_0325 0.13 -0.1 340,423 - Echvi_0325 0.13 +0.4 340,497 - Echvi_0325 0.36 -0.1 340,628 - Echvi_0325 0.77 +0.7 340,663 + Echvi_0325 0.88 -1.8 340,663 + Echvi_0325 0.88 -0.1 340,664 - Echvi_0325 0.88 -1.2 340,664 - -0.6 340,814 + -1.2 340,873 + +0.1 340,873 + -0.2 340,895 + -0.5 340,963 - -0.1 340,992 - +0.2 341,064 - +0.7 341,124 + -2.1 341,125 - -0.1 341,141 + -0.4 341,144 - -3.1 341,167 + -0.1 341,167 + +0.9 341,172 - -0.4 341,198 + +0.4 341,234 + -0.1 341,244 - -0.8 341,245 + -1.6 341,245 + -1.3 341,246 - -1.3 341,288 - -1.2 341,324 + -0.6 341,324 + -2.0 341,325 - +0.1 341,426 - Echvi_0326 0.10 -0.3 341,442 + Echvi_0326 0.11 -0.5 341,443 - Echvi_0326 0.11 +1.4 341,487 + Echvi_0326 0.13 +1.2 341,488 - Echvi_0326 0.13 -0.3 341,571 - Echvi_0326 0.18 -1.0 341,572 + Echvi_0326 0.18 +0.4 341,572 + Echvi_0326 0.18 -0.2 341,573 - Echvi_0326 0.18 +0.9 341,573 - Echvi_0326 0.18 +0.2 341,573 - Echvi_0326 0.18 -0.1 341,573 - Echvi_0326 0.18 -1.3 341,636 + Echvi_0326 0.22 -0.3 341,637 - Echvi_0326 0.22 -0.7 341,637 - Echvi_0326 0.22 +0.2 341,647 + Echvi_0326 0.22 -0.2 341,647 + Echvi_0326 0.22 -0.8 341,648 - Echvi_0326 0.22 -0.9 341,648 - Echvi_0326 0.22 -0.6 341,669 - Echvi_0326 0.23 +1.2 341,669 - Echvi_0326 0.23 -0.1 341,669 - Echvi_0326 0.23 -1.5 341,669 - Echvi_0326 0.23 +0.9 341,672 - Echvi_0326 0.24 +0.5
Or see this region's nucleotide sequence