Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0295

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0294 and Echvi_0295 are separated by 69 nucleotidesEchvi_0295 and Echvi_0296 are separated by 416 nucleotides Echvi_0294: Echvi_0294 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 303,737 to 305,044 _0294 Echvi_0295: Echvi_0295 - hypothetical protein, at 305,114 to 305,938 _0295 Echvi_0296: Echvi_0296 - hypothetical protein, at 306,355 to 307,203 _0296 Position (kb) 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 305.081 kb on - strandat 305.081 kb on - strandat 305.095 kb on + strandat 305.116 kb on - strandat 305.127 kb on - strandat 305.158 kb on + strandat 305.158 kb on + strandat 305.159 kb on - strandat 305.160 kb on + strandat 305.160 kb on + strandat 305.160 kb on + strandat 305.160 kb on + strandat 305.161 kb on - strandat 305.161 kb on - strandat 305.161 kb on - strandat 305.161 kb on - strandat 305.166 kb on + strandat 305.168 kb on + strandat 305.168 kb on + strandat 305.169 kb on - strandat 305.195 kb on + strandat 305.222 kb on - strand, within Echvi_0295at 305.222 kb on - strand, within Echvi_0295at 305.224 kb on - strand, within Echvi_0295at 305.224 kb on - strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.269 kb on + strand, within Echvi_0295at 305.270 kb on - strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.271 kb on + strand, within Echvi_0295at 305.272 kb on - strand, within Echvi_0295at 305.274 kb on + strand, within Echvi_0295at 305.279 kb on + strand, within Echvi_0295at 305.313 kb on + strand, within Echvi_0295at 305.323 kb on + strand, within Echvi_0295at 305.323 kb on + strand, within Echvi_0295at 305.323 kb on + strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.324 kb on - strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.325 kb on + strand, within Echvi_0295at 305.326 kb on - strand, within Echvi_0295at 305.344 kb on + strand, within Echvi_0295at 305.344 kb on + strand, within Echvi_0295at 305.345 kb on - strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.410 kb on + strand, within Echvi_0295at 305.411 kb on - strand, within Echvi_0295at 305.411 kb on - strand, within Echvi_0295at 305.413 kb on - strand, within Echvi_0295at 305.413 kb on - strand, within Echvi_0295at 305.475 kb on + strand, within Echvi_0295at 305.492 kb on + strand, within Echvi_0295at 305.492 kb on + strand, within Echvi_0295at 305.493 kb on - strand, within Echvi_0295at 305.562 kb on - strand, within Echvi_0295at 305.571 kb on + strand, within Echvi_0295at 305.599 kb on - strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.632 kb on + strand, within Echvi_0295at 305.633 kb on - strand, within Echvi_0295at 305.639 kb on - strand, within Echvi_0295at 305.643 kb on + strand, within Echvi_0295at 305.658 kb on + strand, within Echvi_0295at 305.659 kb on - strand, within Echvi_0295at 305.659 kb on - strand, within Echvi_0295at 305.671 kb on + strand, within Echvi_0295at 305.673 kb on + strand, within Echvi_0295at 305.673 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.701 kb on + strand, within Echvi_0295at 305.702 kb on - strand, within Echvi_0295at 305.702 kb on - strand, within Echvi_0295at 305.703 kb on + strand, within Echvi_0295at 305.704 kb on - strand, within Echvi_0295at 305.704 kb on - strand, within Echvi_0295at 305.746 kb on + strand, within Echvi_0295at 305.747 kb on - strand, within Echvi_0295at 305.747 kb on - strand, within Echvi_0295at 305.783 kb on + strand, within Echvi_0295at 305.783 kb on + strand, within Echvi_0295at 305.804 kb on - strand, within Echvi_0295at 305.895 kb on - strandat 305.958 kb on - strandat 306.069 kb on + strandat 306.101 kb on + strandat 306.109 kb on + strandat 306.167 kb on - strandat 306.170 kb on + strandat 306.170 kb on + strandat 306.171 kb on - strandat 306.218 kb on - strandat 306.237 kb on + strandat 306.237 kb on + strandat 306.261 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.284 kb on + strandat 306.285 kb on - strandat 306.287 kb on + strandat 306.310 kb on - strandat 306.312 kb on + strandat 306.312 kb on + strandat 306.313 kb on - strandat 306.318 kb on - strandat 306.318 kb on - strandat 306.323 kb on - strandat 306.323 kb on - strandat 306.351 kb on + strandat 306.351 kb on + strandat 306.351 kb on + strandat 306.352 kb on - strandat 306.414 kb on + strandat 306.414 kb on + strandat 306.414 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.423 kb on - strandat 306.469 kb on + strand, within Echvi_0296at 306.501 kb on - strand, within Echvi_0296at 306.501 kb on - strand, within Echvi_0296at 306.648 kb on - strand, within Echvi_0296at 306.722 kb on + strand, within Echvi_0296at 306.815 kb on - strand, within Echvi_0296

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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305,081 - -1.5
305,081 - -0.8
305,095 + -0.3
305,116 - -1.1
305,127 - +0.6
305,158 + -0.1
305,158 + -1.2
305,159 - -1.0
305,160 + -0.2
305,160 + +1.9
305,160 + +0.5
305,160 + +1.3
305,161 - -0.4
305,161 - -1.1
305,161 - -1.0
305,161 - -0.5
305,166 + -0.1
305,168 + -1.4
305,168 + +0.3
305,169 - -0.4
305,195 + +1.5
305,222 - Echvi_0295 0.13 -0.9
305,222 - Echvi_0295 0.13 +0.0
305,224 - Echvi_0295 0.13 -1.4
305,224 - Echvi_0295 0.13 +1.7
305,269 + Echvi_0295 0.19 -0.1
305,269 + Echvi_0295 0.19 -0.4
305,269 + Echvi_0295 0.19 -1.8
305,269 + Echvi_0295 0.19 +1.5
305,269 + Echvi_0295 0.19 -1.3
305,270 - Echvi_0295 0.19 -1.2
305,271 + Echvi_0295 0.19 -0.1
305,271 + Echvi_0295 0.19 -0.7
305,271 + Echvi_0295 0.19 -0.4
305,271 + Echvi_0295 0.19 -0.0
305,272 - Echvi_0295 0.19 -1.8
305,274 + Echvi_0295 0.19 -0.1
305,279 + Echvi_0295 0.20 -0.4
305,313 + Echvi_0295 0.24 +0.7
305,323 + Echvi_0295 0.25 +0.8
305,323 + Echvi_0295 0.25 +0.2
305,323 + Echvi_0295 0.25 +0.9
305,324 - Echvi_0295 0.25 +0.2
305,324 - Echvi_0295 0.25 +1.9
305,324 - Echvi_0295 0.25 +0.9
305,324 - Echvi_0295 0.25 +0.7
305,324 - Echvi_0295 0.25 -1.4
305,324 - Echvi_0295 0.25 -0.3
305,324 - Echvi_0295 0.25 +0.4
305,325 + Echvi_0295 0.26 -0.5
305,325 + Echvi_0295 0.26 -1.3
305,325 + Echvi_0295 0.26 -0.5
305,325 + Echvi_0295 0.26 -0.0
305,326 - Echvi_0295 0.26 -0.2
305,344 + Echvi_0295 0.28 +0.5
305,344 + Echvi_0295 0.28 -0.0
305,345 - Echvi_0295 0.28 +0.8
305,410 + Echvi_0295 0.36 +1.1
305,410 + Echvi_0295 0.36 -1.0
305,410 + Echvi_0295 0.36 -1.9
305,410 + Echvi_0295 0.36 -0.7
305,410 + Echvi_0295 0.36 -0.4
305,411 - Echvi_0295 0.36 +0.3
305,411 - Echvi_0295 0.36 +0.8
305,413 - Echvi_0295 0.36 +0.7
305,413 - Echvi_0295 0.36 +0.3
305,475 + Echvi_0295 0.44 -2.5
305,492 + Echvi_0295 0.46 -0.1
305,492 + Echvi_0295 0.46 -1.2
305,493 - Echvi_0295 0.46 -0.1
305,562 - Echvi_0295 0.54 -0.5
305,571 + Echvi_0295 0.55 +0.2
305,599 - Echvi_0295 0.59 +1.2
305,632 + Echvi_0295 0.63 -0.9
305,632 + Echvi_0295 0.63 -1.0
305,632 + Echvi_0295 0.63 +0.3
305,632 + Echvi_0295 0.63 +0.3
305,633 - Echvi_0295 0.63 -0.9
305,639 - Echvi_0295 0.64 -1.2
305,643 + Echvi_0295 0.64 +0.6
305,658 + Echvi_0295 0.66 -0.8
305,659 - Echvi_0295 0.66 -0.3
305,659 - Echvi_0295 0.66 -2.1
305,671 + Echvi_0295 0.68 -1.9
305,673 + Echvi_0295 0.68 +0.3
305,673 + Echvi_0295 0.68 -0.2
305,701 + Echvi_0295 0.71 -1.1
305,701 + Echvi_0295 0.71 -0.2
305,701 + Echvi_0295 0.71 -0.8
305,702 - Echvi_0295 0.71 -3.0
305,702 - Echvi_0295 0.71 +1.1
305,703 + Echvi_0295 0.71 -0.4
305,704 - Echvi_0295 0.72 +1.3
305,704 - Echvi_0295 0.72 +1.2
305,746 + Echvi_0295 0.77 -3.3
305,747 - Echvi_0295 0.77 -0.4
305,747 - Echvi_0295 0.77 -1.2
305,783 + Echvi_0295 0.81 -1.2
305,783 + Echvi_0295 0.81 -1.9
305,804 - Echvi_0295 0.84 +0.2
305,895 - -0.2
305,958 - -0.9
306,069 + -1.0
306,101 + -0.9
306,109 + -1.7
306,167 - -0.5
306,170 + +0.3
306,170 + -0.1
306,171 - -0.5
306,218 - +0.1
306,237 + -1.5
306,237 + +0.4
306,261 + +0.5
306,281 + +0.1
306,281 + +1.1
306,281 + +0.6
306,281 + +2.9
306,284 + -0.2
306,285 - -0.5
306,287 + +1.9
306,310 - +1.5
306,312 + +0.6
306,312 + -0.7
306,313 - +0.2
306,318 - +0.4
306,318 - +0.8
306,323 - +1.1
306,323 - -2.3
306,351 + -0.1
306,351 + +0.6
306,351 + -0.4
306,352 - +0.3
306,414 + -1.2
306,414 + +0.2
306,414 + +2.5
306,422 + -0.4
306,422 + +0.9
306,422 + -0.4
306,422 + -1.5
306,423 - +2.9
306,469 + Echvi_0296 0.13 -2.1
306,501 - Echvi_0296 0.17 +0.1
306,501 - Echvi_0296 0.17 -0.8
306,648 - Echvi_0296 0.35 -2.1
306,722 + Echvi_0296 0.43 -0.7
306,815 - Echvi_0296 0.54 +0.8

Or see this region's nucleotide sequence