Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0223 and Echvi_0224 are separated by 261 nucleotides Echvi_0224 and Echvi_0225 are separated by 144 nucleotides Echvi_0225 and Echvi_0226 are separated by 25 nucleotides
Echvi_0223: Echvi_0223 - Septum formation initiator., at 241,095 to 241,382
_0223
Echvi_0224: Echvi_0224 - hypothetical protein, at 241,644 to 242,017
_0224
Echvi_0225: Echvi_0225 - phosphopyruvate hydratase, at 242,162 to 243,439
_0225
Echvi_0226: Echvi_0226 - carbamoyl-phosphate synthase, small subunit, at 243,465 to 244,559
_0226
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1 at 241.398 kb on - strand at 241.402 kb on - strand at 241.411 kb on - strand at 241.419 kb on + strand at 241.448 kb on + strand at 241.448 kb on + strand at 241.449 kb on - strand at 241.454 kb on - strand at 241.460 kb on + strand at 241.487 kb on + strand at 241.496 kb on + strand at 241.496 kb on + strand at 241.501 kb on - strand at 241.503 kb on + strand at 241.560 kb on + strand at 241.561 kb on - strand at 241.650 kb on + strand at 241.651 kb on - strand at 241.651 kb on - strand at 241.691 kb on + strand, within Echvi_0224 at 241.692 kb on - strand, within Echvi_0224 at 241.764 kb on - strand, within Echvi_0224 at 241.768 kb on - strand, within Echvi_0224 at 241.782 kb on - strand, within Echvi_0224 at 241.890 kb on + strand, within Echvi_0224 at 241.891 kb on - strand, within Echvi_0224 at 241.962 kb on + strand, within Echvi_0224 at 241.963 kb on - strand, within Echvi_0224 at 241.996 kb on - strand at 242.142 kb on + strand at 242.145 kb on + strand at 242.163 kb on + strand at 243.457 kb on - strand at 243.457 kb on - strand at 243.457 kb on - strand at 243.457 kb on - strand at 243.467 kb on - strand at 243.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 241,398 - +0.3 241,402 - -1.1 241,411 - +0.6 241,419 + -1.8 241,448 + -1.6 241,448 + +0.1 241,449 - -1.0 241,454 - +0.8 241,460 + +1.3 241,487 + -1.3 241,496 + -1.1 241,496 + +0.7 241,501 - +0.4 241,503 + -0.7 241,560 + -0.4 241,561 - -1.4 241,650 + +0.4 241,651 - -1.1 241,651 - -0.1 241,691 + Echvi_0224 0.13 -1.1 241,692 - Echvi_0224 0.13 +0.1 241,764 - Echvi_0224 0.32 -1.3 241,768 - Echvi_0224 0.33 -1.6 241,782 - Echvi_0224 0.37 -0.8 241,890 + Echvi_0224 0.66 +0.6 241,891 - Echvi_0224 0.66 -1.1 241,962 + Echvi_0224 0.85 -0.9 241,963 - Echvi_0224 0.85 -0.7 241,996 - -1.6 242,142 + -1.6 242,145 + +0.9 242,163 + +0.5 243,457 - +0.3 243,457 - +0.6 243,457 - +0.0 243,457 - +0.0 243,467 - +0.3 243,471 - +0.3
Or see this region's nucleotide sequence