Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0194 and Echvi_0195 are separated by 65 nucleotides Echvi_0195 and Echvi_0196 are separated by 82 nucleotides Echvi_0196 and Echvi_0197 are separated by 13 nucleotides Echvi_0197 and Echvi_0198 are separated by 56 nucleotides
Echvi_0194: Echvi_0194 - Protein of unknown function (DUF3109)., at 211,187 to 211,837
_0194
Echvi_0195: Echvi_0195 - RNA, at 211,903 to 212,222
_0195
Echvi_0196: Echvi_0196 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 212,305 to 213,462
_0196
Echvi_0197: Echvi_0197 - hypothetical protein, at 213,476 to 213,595
_0197
Echvi_0198: Echvi_0198 - Coenzyme F390 synthetase, at 213,652 to 214,656
_0198
Position (kb) 212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.379 kb on + strand, within Echvi_0194 at 211.379 kb on + strand, within Echvi_0194 at 211.379 kb on + strand, within Echvi_0194 at 211.380 kb on - strand, within Echvi_0194 at 211.380 kb on - strand, within Echvi_0194 at 211.380 kb on - strand, within Echvi_0194 at 211.380 kb on - strand, within Echvi_0194 at 211.391 kb on + strand, within Echvi_0194 at 211.409 kb on + strand, within Echvi_0194 at 211.476 kb on + strand, within Echvi_0194 at 211.502 kb on - strand, within Echvi_0194 at 211.540 kb on + strand, within Echvi_0194 at 211.553 kb on + strand, within Echvi_0194 at 211.554 kb on - strand, within Echvi_0194 at 211.581 kb on + strand, within Echvi_0194 at 211.582 kb on - strand, within Echvi_0194 at 211.594 kb on + strand, within Echvi_0194 at 211.740 kb on - strand, within Echvi_0194 at 211.742 kb on + strand, within Echvi_0194 at 211.742 kb on + strand, within Echvi_0194 at 211.743 kb on - strand at 211.743 kb on - strand, within Echvi_0194 at 211.743 kb on - strand, within Echvi_0194 at 211.743 kb on - strand, within Echvi_0194 at 211.743 kb on - strand, within Echvi_0194 at 211.745 kb on + strand, within Echvi_0194 at 211.750 kb on + strand, within Echvi_0194 at 211.751 kb on - strand, within Echvi_0194 at 211.751 kb on - strand, within Echvi_0194 at 211.751 kb on - strand, within Echvi_0194 at 211.770 kb on - strand, within Echvi_0194 at 211.843 kb on + strand at 211.843 kb on + strand at 211.843 kb on + strand at 211.845 kb on + strand at 212.300 kb on + strand at 212.300 kb on + strand at 212.322 kb on + strand at 212.408 kb on + strand at 212.408 kb on + strand at 212.408 kb on + strand at 212.427 kb on - strand, within Echvi_0196 at 212.507 kb on - strand, within Echvi_0196 at 212.630 kb on + strand, within Echvi_0196 at 212.740 kb on - strand, within Echvi_0196 at 212.800 kb on - strand, within Echvi_0196 at 212.877 kb on + strand, within Echvi_0196 at 212.878 kb on - strand, within Echvi_0196 at 213.056 kb on + strand, within Echvi_0196 at 213.299 kb on - strand, within Echvi_0196 at 213.299 kb on - strand, within Echvi_0196 at 213.406 kb on - strand at 213.485 kb on + strand at 213.485 kb on + strand at 213.513 kb on + strand, within Echvi_0197 at 213.574 kb on + strand, within Echvi_0197 at 213.577 kb on + strand, within Echvi_0197 at 213.599 kb on - strand at 213.630 kb on + strand at 213.630 kb on + strand at 213.630 kb on + strand at 213.631 kb on - strand at 213.633 kb on + strand at 213.634 kb on - strand at 213.645 kb on + strand at 213.654 kb on - strand at 213.756 kb on + strand, within Echvi_0198 at 213.790 kb on + strand, within Echvi_0198 at 213.795 kb on + strand, within Echvi_0198 at 213.795 kb on + strand, within Echvi_0198 at 213.798 kb on + strand, within Echvi_0198 at 213.879 kb on - strand, within Echvi_0198 at 213.900 kb on - strand, within Echvi_0198 at 214.039 kb on + strand, within Echvi_0198 at 214.175 kb on + strand, within Echvi_0198 at 214.221 kb on + strand, within Echvi_0198 at 214.268 kb on + strand, within Echvi_0198 at 214.313 kb on + strand, within Echvi_0198 at 214.313 kb on + strand, within Echvi_0198 at 214.349 kb on + strand, within Echvi_0198 at 214.405 kb on - strand, within Echvi_0198 at 214.462 kb on - strand, within Echvi_0198
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 211,379 + Echvi_0194 0.29 +1.0 211,379 + Echvi_0194 0.29 -0.8 211,379 + Echvi_0194 0.29 -0.4 211,380 - Echvi_0194 0.30 +0.4 211,380 - Echvi_0194 0.30 -0.3 211,380 - Echvi_0194 0.30 -0.1 211,380 - Echvi_0194 0.30 -0.2 211,391 + Echvi_0194 0.31 +0.4 211,409 + Echvi_0194 0.34 -0.1 211,476 + Echvi_0194 0.44 -2.0 211,502 - Echvi_0194 0.48 -0.6 211,540 + Echvi_0194 0.54 -0.4 211,553 + Echvi_0194 0.56 -0.3 211,554 - Echvi_0194 0.56 -0.4 211,581 + Echvi_0194 0.61 -0.8 211,582 - Echvi_0194 0.61 -2.2 211,594 + Echvi_0194 0.63 +1.9 211,740 - Echvi_0194 0.85 -1.8 211,742 + Echvi_0194 0.85 +0.2 211,742 + Echvi_0194 0.85 +0.1 211,743 - +1.9 211,743 - Echvi_0194 0.85 +1.0 211,743 - Echvi_0194 0.85 -0.8 211,743 - Echvi_0194 0.85 -0.8 211,743 - Echvi_0194 0.85 +0.8 211,745 + Echvi_0194 0.86 -0.2 211,750 + Echvi_0194 0.86 +0.1 211,751 - Echvi_0194 0.87 +2.5 211,751 - Echvi_0194 0.87 -0.1 211,751 - Echvi_0194 0.87 +1.0 211,770 - Echvi_0194 0.90 -0.9 211,843 + -0.3 211,843 + +0.7 211,843 + -2.4 211,845 + -2.5 212,300 + -0.7 212,300 + +0.2 212,322 + -2.3 212,408 + -1.7 212,408 + -1.3 212,408 + -0.3 212,427 - Echvi_0196 0.11 -0.5 212,507 - Echvi_0196 0.17 -1.1 212,630 + Echvi_0196 0.28 -3.1 212,740 - Echvi_0196 0.38 -0.8 212,800 - Echvi_0196 0.43 -0.2 212,877 + Echvi_0196 0.49 -2.1 212,878 - Echvi_0196 0.49 -0.7 213,056 + Echvi_0196 0.65 -0.9 213,299 - Echvi_0196 0.86 -0.4 213,299 - Echvi_0196 0.86 -1.6 213,406 - +0.6 213,485 + -0.4 213,485 + -0.1 213,513 + Echvi_0197 0.31 -0.1 213,574 + Echvi_0197 0.82 -0.2 213,577 + Echvi_0197 0.84 +0.9 213,599 - -0.6 213,630 + +0.3 213,630 + +0.9 213,630 + -0.1 213,631 - -0.6 213,633 + -0.7 213,634 - +0.5 213,645 + -0.1 213,654 - -0.1 213,756 + Echvi_0198 0.10 -1.0 213,790 + Echvi_0198 0.14 +0.2 213,795 + Echvi_0198 0.14 -1.4 213,795 + Echvi_0198 0.14 -1.6 213,798 + Echvi_0198 0.15 +2.5 213,879 - Echvi_0198 0.23 -0.3 213,900 - Echvi_0198 0.25 -1.6 214,039 + Echvi_0198 0.39 -0.9 214,175 + Echvi_0198 0.52 +0.2 214,221 + Echvi_0198 0.57 -0.6 214,268 + Echvi_0198 0.61 -1.1 214,313 + Echvi_0198 0.66 +0.3 214,313 + Echvi_0198 0.66 +0.2 214,349 + Echvi_0198 0.69 -0.9 214,405 - Echvi_0198 0.75 -1.1 214,462 - Echvi_0198 0.81 +0.1
Or see this region's nucleotide sequence