Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0178

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0177 and Echvi_0178 are separated by 2 nucleotidesEchvi_0178 and Echvi_0179 are separated by 465 nucleotidesEchvi_0179 and Echvi_0180 are separated by 50 nucleotides Echvi_0177: Echvi_0177 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 193,524 to 195,848 _0177 Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819 _0178 Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680 _0179 Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204 _0180 Position (kb) 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 194.870 kb on + strand, within Echvi_0177at 194.875 kb on + strand, within Echvi_0177at 194.875 kb on + strand, within Echvi_0177at 194.887 kb on + strand, within Echvi_0177at 194.888 kb on - strand, within Echvi_0177at 194.888 kb on - strand, within Echvi_0177at 194.932 kb on + strand, within Echvi_0177at 194.932 kb on + strand, within Echvi_0177at 194.959 kb on + strand, within Echvi_0177at 195.002 kb on - strand, within Echvi_0177at 195.008 kb on - strand, within Echvi_0177at 195.013 kb on + strand, within Echvi_0177at 195.013 kb on + strand, within Echvi_0177at 195.036 kb on - strand, within Echvi_0177at 195.036 kb on - strand, within Echvi_0177at 195.036 kb on - strand, within Echvi_0177at 195.046 kb on + strand, within Echvi_0177at 195.049 kb on + strand, within Echvi_0177at 195.050 kb on - strand, within Echvi_0177at 195.145 kb on - strand, within Echvi_0177at 195.170 kb on + strand, within Echvi_0177at 195.171 kb on - strand, within Echvi_0177at 195.200 kb on + strand, within Echvi_0177at 195.201 kb on - strand, within Echvi_0177at 195.215 kb on + strand, within Echvi_0177at 195.226 kb on + strand, within Echvi_0177at 195.234 kb on + strand, within Echvi_0177at 195.238 kb on + strand, within Echvi_0177at 195.239 kb on - strand, within Echvi_0177at 195.259 kb on + strand, within Echvi_0177at 195.260 kb on - strand, within Echvi_0177at 195.275 kb on - strand, within Echvi_0177at 195.300 kb on + strand, within Echvi_0177at 195.309 kb on + strand, within Echvi_0177at 195.310 kb on - strand, within Echvi_0177at 195.352 kb on + strand, within Echvi_0177at 195.357 kb on - strand, within Echvi_0177at 195.383 kb on + strand, within Echvi_0177at 195.384 kb on - strand, within Echvi_0177at 195.384 kb on - strand, within Echvi_0177at 195.410 kb on + strand, within Echvi_0177at 195.411 kb on - strand, within Echvi_0177at 195.459 kb on - strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.465 kb on - strand, within Echvi_0177at 195.465 kb on - strand, within Echvi_0177at 195.465 kb on - strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.476 kb on + strand, within Echvi_0177at 195.494 kb on + strand, within Echvi_0177at 195.519 kb on + strand, within Echvi_0177at 195.519 kb on + strand, within Echvi_0177at 195.600 kb on + strand, within Echvi_0177at 195.710 kb on + strandat 195.710 kb on + strandat 195.712 kb on + strandat 195.712 kb on + strandat 195.713 kb on - strandat 195.727 kb on - strandat 195.727 kb on - strandat 195.727 kb on - strandat 195.731 kb on + strandat 195.731 kb on + strandat 195.731 kb on + strandat 195.733 kb on + strandat 195.733 kb on + strandat 195.733 kb on + strandat 195.734 kb on - strandat 195.820 kb on - strandat 195.824 kb on + strandat 195.825 kb on - strandat 195.825 kb on - strandat 195.829 kb on - strandat 195.829 kb on - strandat 195.897 kb on + strandat 195.897 kb on + strandat 195.898 kb on - strandat 195.898 kb on - strandat 195.934 kb on + strandat 195.935 kb on - strandat 195.955 kb on + strand, within Echvi_0178at 195.955 kb on + strand, within Echvi_0178at 195.955 kb on + strand, within Echvi_0178at 195.956 kb on - strand, within Echvi_0178at 195.956 kb on - strand, within Echvi_0178at 195.963 kb on + strand, within Echvi_0178at 195.974 kb on + strand, within Echvi_0178at 195.974 kb on + strand, within Echvi_0178at 196.009 kb on + strand, within Echvi_0178at 196.107 kb on + strand, within Echvi_0178at 196.108 kb on - strand, within Echvi_0178at 196.139 kb on - strand, within Echvi_0178at 196.139 kb on - strand, within Echvi_0178at 196.228 kb on - strand, within Echvi_0178at 196.228 kb on - strand, within Echvi_0178at 196.246 kb on - strand, within Echvi_0178at 196.253 kb on + strand, within Echvi_0178at 196.279 kb on + strand, within Echvi_0178at 196.327 kb on + strand, within Echvi_0178at 196.327 kb on + strand, within Echvi_0178at 196.331 kb on - strand, within Echvi_0178at 196.343 kb on + strand, within Echvi_0178at 196.349 kb on + strand, within Echvi_0178at 196.349 kb on + strand, within Echvi_0178at 196.350 kb on - strand, within Echvi_0178at 196.350 kb on - strand, within Echvi_0178at 196.350 kb on - strand, within Echvi_0178at 196.354 kb on + strand, within Echvi_0178at 196.364 kb on + strand, within Echvi_0178at 196.406 kb on + strand, within Echvi_0178at 196.420 kb on + strand, within Echvi_0178at 196.426 kb on - strand, within Echvi_0178at 196.437 kb on + strand, within Echvi_0178at 196.506 kb on + strand, within Echvi_0178at 196.506 kb on + strand, within Echvi_0178at 196.507 kb on - strand, within Echvi_0178at 196.507 kb on - strand, within Echvi_0178at 196.507 kb on - strand, within Echvi_0178at 196.579 kb on + strand, within Echvi_0178at 196.656 kb on + strand, within Echvi_0178at 196.657 kb on - strand, within Echvi_0178at 196.672 kb on - strand, within Echvi_0178at 196.672 kb on - strand, within Echvi_0178at 196.672 kb on - strand, within Echvi_0178at 196.687 kb on - strand, within Echvi_0178at 196.687 kb on - strand, within Echvi_0178at 196.708 kb on + strand, within Echvi_0178at 196.709 kb on - strand, within Echvi_0178at 196.709 kb on - strand, within Echvi_0178at 196.724 kb on + strandat 196.726 kb on + strandat 196.726 kb on + strandat 196.727 kb on - strandat 196.728 kb on + strandat 196.728 kb on + strandat 196.729 kb on - strandat 196.766 kb on + strandat 196.853 kb on + strandat 197.003 kb on + strandat 197.003 kb on + strandat 197.011 kb on + strandat 197.011 kb on + strandat 197.274 kb on - strandat 197.296 kb on + strandat 197.296 kb on + strandat 197.297 kb on - strandat 197.315 kb on + strandat 197.315 kb on + strandat 197.316 kb on - strandat 197.344 kb on + strand, within Echvi_0179at 197.350 kb on + strand, within Echvi_0179at 197.351 kb on - strand, within Echvi_0179at 197.426 kb on + strand, within Echvi_0179at 197.449 kb on + strand, within Echvi_0179at 197.450 kb on - strand, within Echvi_0179at 197.539 kb on - strand, within Echvi_0179at 197.539 kb on - strand, within Echvi_0179at 197.543 kb on + strand, within Echvi_0179at 197.544 kb on - strand, within Echvi_0179at 197.554 kb on + strand, within Echvi_0179at 197.554 kb on + strand, within Echvi_0179at 197.555 kb on - strand, within Echvi_0179at 197.558 kb on + strand, within Echvi_0179at 197.633 kb on - strand, within Echvi_0179at 197.633 kb on - strand, within Echvi_0179at 197.711 kb on - strandat 197.732 kb on + strandat 197.739 kb on + strandat 197.739 kb on + strandat 197.739 kb on + strandat 197.782 kb on + strand, within Echvi_0180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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194,870 + Echvi_0177 0.58 +1.3
194,875 + Echvi_0177 0.58 +0.4
194,875 + Echvi_0177 0.58 -0.7
194,887 + Echvi_0177 0.59 -0.9
194,888 - Echvi_0177 0.59 +0.9
194,888 - Echvi_0177 0.59 -0.4
194,932 + Echvi_0177 0.61 -0.5
194,932 + Echvi_0177 0.61 +0.9
194,959 + Echvi_0177 0.62 -0.5
195,002 - Echvi_0177 0.64 +1.9
195,008 - Echvi_0177 0.64 -0.2
195,013 + Echvi_0177 0.64 -1.2
195,013 + Echvi_0177 0.64 -0.8
195,036 - Echvi_0177 0.65 +0.9
195,036 - Echvi_0177 0.65 +0.6
195,036 - Echvi_0177 0.65 -0.1
195,046 + Echvi_0177 0.65 +0.4
195,049 + Echvi_0177 0.66 +1.9
195,050 - Echvi_0177 0.66 +0.2
195,145 - Echvi_0177 0.70 +0.4
195,170 + Echvi_0177 0.71 -0.1
195,171 - Echvi_0177 0.71 +0.3
195,200 + Echvi_0177 0.72 -0.9
195,201 - Echvi_0177 0.72 -0.9
195,215 + Echvi_0177 0.73 -0.3
195,226 + Echvi_0177 0.73 -0.1
195,234 + Echvi_0177 0.74 +0.6
195,238 + Echvi_0177 0.74 -1.7
195,239 - Echvi_0177 0.74 +1.3
195,259 + Echvi_0177 0.75 -1.4
195,260 - Echvi_0177 0.75 -1.1
195,275 - Echvi_0177 0.75 +1.3
195,300 + Echvi_0177 0.76 +0.1
195,309 + Echvi_0177 0.77 -1.3
195,310 - Echvi_0177 0.77 +2.1
195,352 + Echvi_0177 0.79 -1.9
195,357 - Echvi_0177 0.79 -0.1
195,383 + Echvi_0177 0.80 +0.6
195,384 - Echvi_0177 0.80 -0.8
195,384 - Echvi_0177 0.80 +0.8
195,410 + Echvi_0177 0.81 +0.2
195,411 - Echvi_0177 0.81 +1.9
195,459 - Echvi_0177 0.83 +0.1
195,464 + Echvi_0177 0.83 -1.7
195,464 + Echvi_0177 0.83 +0.9
195,464 + Echvi_0177 0.83 -0.0
195,464 + Echvi_0177 0.83 -1.4
195,464 + Echvi_0177 0.83 +0.3
195,464 + Echvi_0177 0.83 -0.1
195,465 - Echvi_0177 0.83 +0.4
195,465 - Echvi_0177 0.83 -1.4
195,465 - Echvi_0177 0.83 -0.2
195,466 + Echvi_0177 0.84 -1.5
195,466 + Echvi_0177 0.84 -1.5
195,466 + Echvi_0177 0.84 -2.8
195,466 + Echvi_0177 0.84 -1.7
195,476 + Echvi_0177 0.84 -0.4
195,494 + Echvi_0177 0.85 +0.2
195,519 + Echvi_0177 0.86 -0.0
195,519 + Echvi_0177 0.86 +1.0
195,600 + Echvi_0177 0.89 +0.6
195,710 + -0.1
195,710 + -1.9
195,712 + -2.4
195,712 + -0.3
195,713 - -0.4
195,727 - -0.9
195,727 - -1.8
195,727 - +1.1
195,731 + +2.5
195,731 + +0.9
195,731 + +1.0
195,733 + -0.6
195,733 + -0.4
195,733 + +1.2
195,734 - +0.7
195,820 - +0.1
195,824 + +2.1
195,825 - -1.4
195,825 - +0.3
195,829 - +1.2
195,829 - +1.3
195,897 + -0.4
195,897 + -0.7
195,898 - +0.6
195,898 - -0.2
195,934 + +0.5
195,935 - +1.0
195,955 + Echvi_0178 0.11 +1.4
195,955 + Echvi_0178 0.11 -0.1
195,955 + Echvi_0178 0.11 -1.4
195,956 - Echvi_0178 0.11 -0.4
195,956 - Echvi_0178 0.11 +0.1
195,963 + Echvi_0178 0.12 +0.1
195,974 + Echvi_0178 0.13 +0.5
195,974 + Echvi_0178 0.13 +1.0
196,009 + Echvi_0178 0.16 +0.3
196,107 + Echvi_0178 0.26 -0.4
196,108 - Echvi_0178 0.27 +0.4
196,139 - Echvi_0178 0.30 -0.1
196,139 - Echvi_0178 0.30 +0.6
196,228 - Echvi_0178 0.39 -0.6
196,228 - Echvi_0178 0.39 +0.4
196,246 - Echvi_0178 0.41 -0.0
196,253 + Echvi_0178 0.41 -0.3
196,279 + Echvi_0178 0.44 -0.1
196,327 + Echvi_0178 0.49 -0.5
196,327 + Echvi_0178 0.49 +0.5
196,331 - Echvi_0178 0.50 -1.1
196,343 + Echvi_0178 0.51 +0.9
196,349 + Echvi_0178 0.51 -0.4
196,349 + Echvi_0178 0.51 -0.2
196,350 - Echvi_0178 0.51 -0.7
196,350 - Echvi_0178 0.51 -0.7
196,350 - Echvi_0178 0.51 -0.1
196,354 + Echvi_0178 0.52 -1.6
196,364 + Echvi_0178 0.53 +0.6
196,406 + Echvi_0178 0.57 +0.5
196,420 + Echvi_0178 0.59 +0.4
196,426 - Echvi_0178 0.59 +0.6
196,437 + Echvi_0178 0.60 +0.3
196,506 + Echvi_0178 0.68 +0.2
196,506 + Echvi_0178 0.68 -2.2
196,507 - Echvi_0178 0.68 +1.3
196,507 - Echvi_0178 0.68 +2.4
196,507 - Echvi_0178 0.68 +0.3
196,579 + Echvi_0178 0.75 +0.3
196,656 + Echvi_0178 0.83 -1.6
196,657 - Echvi_0178 0.83 +0.4
196,672 - Echvi_0178 0.85 +0.8
196,672 - Echvi_0178 0.85 +1.9
196,672 - Echvi_0178 0.85 +0.7
196,687 - Echvi_0178 0.86 +0.1
196,687 - Echvi_0178 0.86 +0.5
196,708 + Echvi_0178 0.88 +0.0
196,709 - Echvi_0178 0.89 +0.4
196,709 - Echvi_0178 0.89 -0.0
196,724 + -1.3
196,726 + -0.4
196,726 + +0.2
196,727 - +0.1
196,728 + +0.3
196,728 + +0.4
196,729 - -0.0
196,766 + -0.1
196,853 + +0.9
197,003 + +1.9
197,003 + +0.3
197,011 + -0.0
197,011 + +1.2
197,274 - -1.3
197,296 + +1.3
197,296 + -0.5
197,297 - +0.3
197,315 + +0.6
197,315 + +0.3
197,316 - +0.5
197,344 + Echvi_0179 0.15 -1.6
197,350 + Echvi_0179 0.16 -0.2
197,351 - Echvi_0179 0.17 +0.1
197,426 + Echvi_0179 0.36 -1.3
197,449 + Echvi_0179 0.41 -0.7
197,450 - Echvi_0179 0.42 -1.0
197,539 - Echvi_0179 0.64 -0.6
197,539 - Echvi_0179 0.64 -0.4
197,543 + Echvi_0179 0.65 -1.5
197,544 - Echvi_0179 0.65 +0.6
197,554 + Echvi_0179 0.68 -0.3
197,554 + Echvi_0179 0.68 +0.4
197,555 - Echvi_0179 0.68 -0.1
197,558 + Echvi_0179 0.69 -1.3
197,633 - Echvi_0179 0.88 -0.4
197,633 - Echvi_0179 0.88 -0.0
197,711 - +0.3
197,732 + +0.2
197,739 + -1.7
197,739 + -2.1
197,739 + -0.6
197,782 + Echvi_0180 0.11 +1.2

Or see this region's nucleotide sequence