Experiment: Stachyose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5511 and Atu5512 are separated by 84 nucleotides Atu5512 and Atu5513 are separated by 116 nucleotides Atu5513 and Atu5514 are separated by 437 nucleotides
Atu5511: Atu5511 - hypothetical protein, at 505,230 to 505,505
Atu5511
Atu5512: Atu5512 - hypothetical protein, at 505,590 to 505,814
Atu5512
Atu5513: Atu5513 - cold shock protein, at 505,931 to 506,155
Atu5513
Atu5514: Atu5514 - DnaJ family molecular chaperone, at 506,593 to 507,198
Atu5514
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.035 kb on + strand at 505.035 kb on + strand at 505.037 kb on + strand at 505.043 kb on - strand at 505.045 kb on + strand at 505.045 kb on - strand at 505.074 kb on + strand at 505.082 kb on - strand at 505.123 kb on + strand at 505.221 kb on - strand at 505.224 kb on + strand at 505.306 kb on - strand, within Atu5511 at 505.337 kb on - strand, within Atu5511 at 505.358 kb on - strand, within Atu5511 at 505.412 kb on + strand, within Atu5511 at 505.460 kb on + strand, within Atu5511 at 505.476 kb on - strand, within Atu5511 at 505.506 kb on + strand at 505.526 kb on - strand at 505.536 kb on - strand at 505.557 kb on - strand at 505.567 kb on - strand at 505.567 kb on - strand at 505.588 kb on + strand at 505.591 kb on - strand at 505.676 kb on + strand, within Atu5512 at 505.678 kb on + strand, within Atu5512 at 505.684 kb on - strand, within Atu5512 at 505.693 kb on + strand, within Atu5512 at 505.701 kb on - strand, within Atu5512 at 505.727 kb on - strand, within Atu5512 at 505.729 kb on + strand, within Atu5512 at 505.810 kb on + strand at 505.827 kb on - strand at 505.834 kb on - strand at 505.852 kb on + strand at 505.866 kb on + strand at 505.920 kb on + strand at 505.923 kb on - strand at 505.938 kb on - strand at 505.952 kb on + strand at 506.008 kb on - strand, within Atu5513 at 506.008 kb on - strand, within Atu5513 at 506.048 kb on + strand, within Atu5513 at 506.086 kb on + strand, within Atu5513 at 506.143 kb on - strand at 506.148 kb on - strand at 506.170 kb on - strand at 506.172 kb on + strand at 506.226 kb on + strand at 506.429 kb on + strand at 506.442 kb on + strand at 506.499 kb on - strand at 506.669 kb on - strand, within Atu5514 at 506.698 kb on - strand, within Atu5514 at 506.724 kb on - strand, within Atu5514 at 506.749 kb on - strand, within Atu5514 at 506.749 kb on - strand, within Atu5514 at 506.759 kb on + strand, within Atu5514 at 506.767 kb on - strand, within Atu5514 at 506.776 kb on + strand, within Atu5514 at 506.784 kb on - strand, within Atu5514 at 506.788 kb on + strand, within Atu5514 at 506.833 kb on + strand, within Atu5514 at 506.956 kb on + strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.971 kb on - strand, within Atu5514 at 506.979 kb on + strand, within Atu5514 at 506.981 kb on - strand, within Atu5514 at 506.984 kb on + strand, within Atu5514 at 507.023 kb on - strand, within Atu5514 at 507.040 kb on - strand, within Atu5514 at 507.041 kb on - strand, within Atu5514 at 507.077 kb on + strand, within Atu5514
Per-strain Table
Position Strand Gene LocusTag Fraction Stachyose (C) remove 505,035 + +0.4 505,035 + +0.2 505,037 + -0.4 505,043 - -1.0 505,045 + -0.2 505,045 - -0.1 505,074 + +0.4 505,082 - -0.0 505,123 + -1.1 505,221 - +0.8 505,224 + +1.0 505,306 - Atu5511 0.28 -0.0 505,337 - Atu5511 0.39 +1.2 505,358 - Atu5511 0.46 -0.5 505,412 + Atu5511 0.66 -0.6 505,460 + Atu5511 0.83 +0.7 505,476 - Atu5511 0.89 -0.2 505,506 + +0.5 505,526 - -1.0 505,536 - -1.1 505,557 - +0.5 505,567 - +0.1 505,567 - -0.9 505,588 + +1.8 505,591 - +0.4 505,676 + Atu5512 0.38 +1.1 505,678 + Atu5512 0.39 +0.2 505,684 - Atu5512 0.42 -0.7 505,693 + Atu5512 0.46 -0.3 505,701 - Atu5512 0.49 +0.2 505,727 - Atu5512 0.61 -1.4 505,729 + Atu5512 0.62 -0.1 505,810 + -0.1 505,827 - +0.1 505,834 - -0.2 505,852 + +0.5 505,866 + -0.2 505,920 + +1.0 505,923 - +0.0 505,938 - +1.0 505,952 + +1.1 506,008 - Atu5513 0.34 -0.1 506,008 - Atu5513 0.34 -1.0 506,048 + Atu5513 0.52 -2.7 506,086 + Atu5513 0.69 -1.0 506,143 - +0.2 506,148 - -0.4 506,170 - +1.4 506,172 + -0.5 506,226 + -0.4 506,429 + -0.4 506,442 + +0.1 506,499 - +0.0 506,669 - Atu5514 0.13 +1.4 506,698 - Atu5514 0.17 +0.4 506,724 - Atu5514 0.22 -0.5 506,749 - Atu5514 0.26 +0.6 506,749 - Atu5514 0.26 -0.5 506,759 + Atu5514 0.27 +2.0 506,767 - Atu5514 0.29 +1.1 506,776 + Atu5514 0.30 -1.3 506,784 - Atu5514 0.32 +0.3 506,788 + Atu5514 0.32 -1.5 506,833 + Atu5514 0.40 +1.7 506,956 + Atu5514 0.60 +0.0 506,971 - Atu5514 0.62 -1.5 506,971 - Atu5514 0.62 +0.5 506,971 - Atu5514 0.62 +0.3 506,971 - Atu5514 0.62 +0.4 506,979 + Atu5514 0.64 +0.5 506,981 - Atu5514 0.64 -0.4 506,984 + Atu5514 0.65 +1.0 507,023 - Atu5514 0.71 +0.6 507,040 - Atu5514 0.74 +0.3 507,041 - Atu5514 0.74 -0.0 507,077 + Atu5514 0.80 -1.1
Or see this region's nucleotide sequence