Experiment: Stachyose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3408 and Atu3409 are separated by 93 nucleotides Atu3409 and Atu3410 are separated by 92 nucleotides
Atu3408: Atu3408 - 2-haloalkanoic acid dehalogenase, at 453,848 to 454,693
Atu3408
Atu3409: Atu3409 - oligopeptide ABC transporter substrate-binding protein, at 454,787 to 456,397
Atu3409
Atu3410: Atu3410 - ABC transporter permease, at 456,490 to 457,440
Atu3410
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -1
0
1 at 454.032 kb on - strand, within Atu3408 at 454.061 kb on - strand, within Atu3408 at 454.073 kb on - strand, within Atu3408 at 454.075 kb on + strand, within Atu3408 at 454.093 kb on - strand, within Atu3408 at 454.126 kb on + strand, within Atu3408 at 454.134 kb on - strand, within Atu3408 at 454.182 kb on + strand, within Atu3408 at 454.187 kb on + strand, within Atu3408 at 454.306 kb on + strand, within Atu3408 at 454.314 kb on + strand, within Atu3408 at 454.336 kb on - strand, within Atu3408 at 454.489 kb on - strand, within Atu3408 at 454.546 kb on + strand, within Atu3408 at 454.591 kb on - strand, within Atu3408 at 454.600 kb on - strand, within Atu3408 at 454.785 kb on - strand at 454.813 kb on - strand at 454.848 kb on - strand at 454.896 kb on + strand at 454.924 kb on + strand at 455.045 kb on + strand, within Atu3409 at 455.167 kb on - strand, within Atu3409 at 455.233 kb on + strand, within Atu3409 at 455.256 kb on + strand, within Atu3409 at 455.256 kb on + strand, within Atu3409 at 455.407 kb on - strand, within Atu3409 at 455.410 kb on + strand, within Atu3409 at 455.508 kb on - strand, within Atu3409 at 455.513 kb on + strand, within Atu3409 at 455.523 kb on + strand, within Atu3409 at 455.531 kb on - strand, within Atu3409 at 455.616 kb on + strand, within Atu3409 at 455.616 kb on + strand, within Atu3409 at 455.624 kb on - strand, within Atu3409 at 455.965 kb on + strand, within Atu3409 at 456.048 kb on - strand, within Atu3409 at 456.056 kb on - strand, within Atu3409 at 456.073 kb on - strand, within Atu3409 at 456.121 kb on + strand, within Atu3409 at 456.155 kb on - strand, within Atu3409 at 456.273 kb on + strand at 456.277 kb on - strand at 456.312 kb on + strand at 456.360 kb on - strand at 456.366 kb on - strand at 456.374 kb on + strand at 456.649 kb on + strand, within Atu3410 at 456.693 kb on - strand, within Atu3410 at 456.717 kb on + strand, within Atu3410 at 456.725 kb on - strand, within Atu3410 at 456.725 kb on - strand, within Atu3410 at 456.729 kb on + strand, within Atu3410 at 456.827 kb on - strand, within Atu3410 at 456.888 kb on - strand, within Atu3410 at 456.955 kb on + strand, within Atu3410 at 456.955 kb on + strand, within Atu3410 at 456.961 kb on - strand, within Atu3410 at 457.068 kb on - strand, within Atu3410 at 457.188 kb on - strand, within Atu3410 at 457.204 kb on + strand, within Atu3410 at 457.205 kb on - strand, within Atu3410 at 457.226 kb on - strand, within Atu3410 at 457.344 kb on + strand, within Atu3410 at 457.353 kb on - strand at 457.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stachyose (C) remove 454,032 - Atu3408 0.22 -0.3 454,061 - Atu3408 0.25 -0.8 454,073 - Atu3408 0.27 +1.0 454,075 + Atu3408 0.27 -0.8 454,093 - Atu3408 0.29 +0.3 454,126 + Atu3408 0.33 +0.3 454,134 - Atu3408 0.34 +0.4 454,182 + Atu3408 0.39 -0.8 454,187 + Atu3408 0.40 -0.5 454,306 + Atu3408 0.54 -0.1 454,314 + Atu3408 0.55 -0.1 454,336 - Atu3408 0.58 -0.2 454,489 - Atu3408 0.76 +0.0 454,546 + Atu3408 0.83 -0.5 454,591 - Atu3408 0.88 -0.0 454,600 - Atu3408 0.89 -0.6 454,785 - +0.3 454,813 - +0.4 454,848 - +0.2 454,896 + +0.1 454,924 + +0.0 455,045 + Atu3409 0.16 -0.7 455,167 - Atu3409 0.24 +0.8 455,233 + Atu3409 0.28 +0.1 455,256 + Atu3409 0.29 +0.2 455,256 + Atu3409 0.29 +0.9 455,407 - Atu3409 0.38 +0.4 455,410 + Atu3409 0.39 -0.0 455,508 - Atu3409 0.45 -0.2 455,513 + Atu3409 0.45 +0.1 455,523 + Atu3409 0.46 +0.0 455,531 - Atu3409 0.46 +0.0 455,616 + Atu3409 0.51 +0.5 455,616 + Atu3409 0.51 +0.2 455,624 - Atu3409 0.52 +0.4 455,965 + Atu3409 0.73 +0.1 456,048 - Atu3409 0.78 -0.3 456,056 - Atu3409 0.79 +0.1 456,073 - Atu3409 0.80 -0.3 456,121 + Atu3409 0.83 -0.8 456,155 - Atu3409 0.85 -0.5 456,273 + -0.2 456,277 - +0.5 456,312 + -0.1 456,360 - +0.5 456,366 - +0.3 456,374 + +0.3 456,649 + Atu3410 0.17 -0.2 456,693 - Atu3410 0.21 +0.4 456,717 + Atu3410 0.24 +0.1 456,725 - Atu3410 0.25 -0.7 456,725 - Atu3410 0.25 +0.0 456,729 + Atu3410 0.25 +1.4 456,827 - Atu3410 0.35 +0.0 456,888 - Atu3410 0.42 +1.4 456,955 + Atu3410 0.49 -0.5 456,955 + Atu3410 0.49 -0.2 456,961 - Atu3410 0.50 +0.0 457,068 - Atu3410 0.61 -0.1 457,188 - Atu3410 0.73 -0.1 457,204 + Atu3410 0.75 -0.3 457,205 - Atu3410 0.75 -0.2 457,226 - Atu3410 0.77 +0.3 457,344 + Atu3410 0.90 +0.2 457,353 - -0.1 457,353 - +0.2
Or see this region's nucleotide sequence