Experiment: Stachyose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3206 and Atu3207 are separated by 318 nucleotides Atu3207 and Atu3208 are separated by 37 nucleotides
Atu3206: Atu3206 - hypothetical protein, at 218,729 to 219,772
Atu3206
Atu3207: Atu3207 - diguanylate cyclase, at 220,091 to 222,085
Atu3207
Atu3208: Atu3208 - malate dehydrogenase, at 222,123 to 223,169
Atu3208
Position (kb) 220
221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 219.129 kb on - strand, within Atu3206 at 219.136 kb on + strand, within Atu3206 at 219.144 kb on - strand, within Atu3206 at 219.153 kb on + strand, within Atu3206 at 219.308 kb on + strand, within Atu3206 at 219.326 kb on - strand, within Atu3206 at 219.358 kb on + strand, within Atu3206 at 219.366 kb on - strand, within Atu3206 at 219.366 kb on - strand, within Atu3206 at 219.366 kb on - strand, within Atu3206 at 219.371 kb on - strand, within Atu3206 at 219.384 kb on - strand, within Atu3206 at 219.470 kb on - strand, within Atu3206 at 219.495 kb on + strand, within Atu3206 at 219.721 kb on + strand at 219.731 kb on + strand at 219.854 kb on + strand at 219.902 kb on + strand at 219.989 kb on + strand at 219.989 kb on + strand at 220.164 kb on + strand at 220.228 kb on - strand at 220.270 kb on - strand at 220.330 kb on - strand, within Atu3207 at 220.355 kb on - strand, within Atu3207 at 220.357 kb on + strand, within Atu3207 at 220.380 kb on + strand, within Atu3207 at 220.380 kb on + strand, within Atu3207 at 220.388 kb on - strand, within Atu3207 at 220.388 kb on - strand, within Atu3207 at 220.388 kb on - strand, within Atu3207 at 220.388 kb on - strand, within Atu3207 at 220.408 kb on + strand, within Atu3207 at 220.484 kb on - strand, within Atu3207 at 220.489 kb on - strand, within Atu3207 at 220.530 kb on + strand, within Atu3207 at 220.532 kb on - strand, within Atu3207 at 220.660 kb on - strand, within Atu3207 at 220.719 kb on + strand, within Atu3207 at 220.730 kb on + strand, within Atu3207 at 220.740 kb on - strand, within Atu3207 at 220.740 kb on - strand, within Atu3207 at 220.799 kb on + strand, within Atu3207 at 220.861 kb on + strand, within Atu3207 at 220.865 kb on - strand, within Atu3207 at 220.867 kb on + strand, within Atu3207 at 220.867 kb on + strand, within Atu3207 at 220.888 kb on - strand, within Atu3207 at 220.890 kb on + strand, within Atu3207 at 220.983 kb on - strand, within Atu3207 at 221.052 kb on - strand, within Atu3207 at 221.069 kb on + strand, within Atu3207 at 221.096 kb on + strand, within Atu3207 at 221.171 kb on - strand, within Atu3207 at 221.406 kb on - strand, within Atu3207 at 221.444 kb on + strand, within Atu3207 at 221.569 kb on - strand, within Atu3207 at 221.580 kb on - strand, within Atu3207 at 221.639 kb on - strand, within Atu3207 at 221.639 kb on - strand, within Atu3207 at 221.661 kb on + strand, within Atu3207 at 221.719 kb on - strand, within Atu3207 at 221.721 kb on + strand, within Atu3207 at 221.729 kb on - strand, within Atu3207 at 221.866 kb on + strand, within Atu3207 at 221.953 kb on + strand at 221.990 kb on - strand at 222.000 kb on - strand at 222.320 kb on + strand, within Atu3208 at 222.374 kb on + strand, within Atu3208 at 222.444 kb on + strand, within Atu3208 at 222.533 kb on - strand, within Atu3208 at 222.630 kb on - strand, within Atu3208 at 222.654 kb on - strand, within Atu3208 at 222.701 kb on + strand, within Atu3208 at 222.972 kb on + strand, within Atu3208 at 223.016 kb on - strand, within Atu3208 at 223.037 kb on + strand, within Atu3208 at 223.045 kb on - strand, within Atu3208 at 223.047 kb on - strand, within Atu3208 at 223.058 kb on + strand, within Atu3208 at 223.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stachyose (C) remove 219,129 - Atu3206 0.38 +0.1 219,136 + Atu3206 0.39 +0.5 219,144 - Atu3206 0.40 +0.1 219,153 + Atu3206 0.41 -0.2 219,308 + Atu3206 0.55 +0.1 219,326 - Atu3206 0.57 -0.2 219,358 + Atu3206 0.60 +0.0 219,366 - Atu3206 0.61 -0.2 219,366 - Atu3206 0.61 -0.3 219,366 - Atu3206 0.61 +1.0 219,371 - Atu3206 0.61 -0.1 219,384 - Atu3206 0.63 -1.4 219,470 - Atu3206 0.71 -1.0 219,495 + Atu3206 0.73 -0.7 219,721 + -0.1 219,731 + -0.6 219,854 + -0.0 219,902 + -0.5 219,989 + -0.7 219,989 + -0.1 220,164 + -1.3 220,228 - -1.2 220,270 - +0.4 220,330 - Atu3207 0.12 -0.2 220,355 - Atu3207 0.13 -0.7 220,357 + Atu3207 0.13 -1.7 220,380 + Atu3207 0.14 -0.4 220,380 + Atu3207 0.14 -1.8 220,388 - Atu3207 0.15 -1.0 220,388 - Atu3207 0.15 -0.7 220,388 - Atu3207 0.15 -0.2 220,388 - Atu3207 0.15 -0.5 220,408 + Atu3207 0.16 -0.4 220,484 - Atu3207 0.20 -0.5 220,489 - Atu3207 0.20 -0.2 220,530 + Atu3207 0.22 -0.8 220,532 - Atu3207 0.22 -1.0 220,660 - Atu3207 0.29 -0.7 220,719 + Atu3207 0.31 +2.1 220,730 + Atu3207 0.32 -1.0 220,740 - Atu3207 0.33 +0.1 220,740 - Atu3207 0.33 -1.3 220,799 + Atu3207 0.35 -0.4 220,861 + Atu3207 0.39 -0.4 220,865 - Atu3207 0.39 -0.5 220,867 + Atu3207 0.39 -0.8 220,867 + Atu3207 0.39 -0.6 220,888 - Atu3207 0.40 -1.2 220,890 + Atu3207 0.40 -0.8 220,983 - Atu3207 0.45 -2.2 221,052 - Atu3207 0.48 -1.1 221,069 + Atu3207 0.49 -0.6 221,096 + Atu3207 0.50 +1.0 221,171 - Atu3207 0.54 -1.4 221,406 - Atu3207 0.66 -1.3 221,444 + Atu3207 0.68 -1.2 221,569 - Atu3207 0.74 -0.5 221,580 - Atu3207 0.75 -1.2 221,639 - Atu3207 0.78 -0.9 221,639 - Atu3207 0.78 -1.5 221,661 + Atu3207 0.79 -0.7 221,719 - Atu3207 0.82 +1.2 221,721 + Atu3207 0.82 -1.3 221,729 - Atu3207 0.82 -0.7 221,866 + Atu3207 0.89 +0.0 221,953 + -0.2 221,990 - -2.0 222,000 - -0.2 222,320 + Atu3208 0.19 +0.9 222,374 + Atu3208 0.24 -0.1 222,444 + Atu3208 0.31 +0.6 222,533 - Atu3208 0.39 +0.3 222,630 - Atu3208 0.48 +0.6 222,654 - Atu3208 0.51 -0.4 222,701 + Atu3208 0.55 +0.4 222,972 + Atu3208 0.81 +0.4 223,016 - Atu3208 0.85 +0.0 223,037 + Atu3208 0.87 -1.7 223,045 - Atu3208 0.88 +0.3 223,047 - Atu3208 0.88 -0.2 223,058 + Atu3208 0.89 +0.6 223,066 - -0.1
Or see this region's nucleotide sequence