Experiment: Stachyose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0399 and Atu0400 are separated by 151 nucleotides Atu0400 and Atu0401 are separated by 99 nucleotides
Atu0399: Atu0399 - dihydroorotase, at 393,648 to 394,685
Atu0399
Atu0400: Atu0400 - orotate phosphoribosyltransferase, at 394,837 to 395,535
Atu0400
Atu0401: Atu0401 - fructokinase, at 395,635 to 396,561
Atu0401
Position (kb) 394
395
396 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 394.009 kb on - strand, within Atu0399 at 394.116 kb on + strand, within Atu0399 at 394.116 kb on + strand, within Atu0399 at 394.124 kb on - strand, within Atu0399 at 394.398 kb on + strand, within Atu0399 at 394.449 kb on + strand, within Atu0399 at 394.468 kb on + strand, within Atu0399 at 394.476 kb on - strand, within Atu0399 at 394.516 kb on - strand, within Atu0399 at 394.557 kb on - strand, within Atu0399 at 394.580 kb on + strand, within Atu0399 at 394.580 kb on + strand, within Atu0399 at 394.588 kb on - strand at 394.740 kb on - strand at 394.740 kb on - strand at 394.940 kb on - strand, within Atu0400 at 394.940 kb on - strand, within Atu0400 at 394.940 kb on - strand, within Atu0400 at 395.017 kb on - strand, within Atu0400 at 395.118 kb on - strand, within Atu0400 at 395.163 kb on + strand, within Atu0400 at 395.375 kb on - strand, within Atu0400 at 395.482 kb on + strand at 395.505 kb on - strand at 395.551 kb on + strand at 395.625 kb on - strand at 395.736 kb on - strand, within Atu0401 at 395.863 kb on + strand, within Atu0401 at 396.011 kb on - strand, within Atu0401 at 396.028 kb on + strand, within Atu0401 at 396.055 kb on - strand, within Atu0401 at 396.356 kb on - strand, within Atu0401 at 396.513 kb on + strand at 396.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stachyose (C) remove 394,009 - Atu0399 0.35 -0.7 394,116 + Atu0399 0.45 -2.1 394,116 + Atu0399 0.45 -1.7 394,124 - Atu0399 0.46 -4.5 394,398 + Atu0399 0.72 -3.6 394,449 + Atu0399 0.77 -4.5 394,468 + Atu0399 0.79 -1.8 394,476 - Atu0399 0.80 +0.3 394,516 - Atu0399 0.84 -2.2 394,557 - Atu0399 0.88 -3.4 394,580 + Atu0399 0.90 -2.8 394,580 + Atu0399 0.90 -3.6 394,588 - -2.7 394,740 - -0.0 394,740 - -0.1 394,940 - Atu0400 0.15 -2.5 394,940 - Atu0400 0.15 -5.5 394,940 - Atu0400 0.15 -0.3 395,017 - Atu0400 0.26 -3.8 395,118 - Atu0400 0.40 -1.5 395,163 + Atu0400 0.47 -3.1 395,375 - Atu0400 0.77 -5.0 395,482 + -4.8 395,505 - -2.1 395,551 + +0.3 395,625 - +0.1 395,736 - Atu0401 0.11 -2.0 395,863 + Atu0401 0.25 -1.7 396,011 - Atu0401 0.41 -1.4 396,028 + Atu0401 0.42 -1.9 396,055 - Atu0401 0.45 -2.1 396,356 - Atu0401 0.78 -3.4 396,513 + -1.1 396,521 - -2.0
Or see this region's nucleotide sequence