Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_65

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_64 and PfGW456L13_65 overlap by 1 nucleotidesPfGW456L13_65 and PfGW456L13_66 overlap by 4 nucleotidesPfGW456L13_66 and PfGW456L13_67 overlap by 8 nucleotides PfGW456L13_64 - Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase, at 74,786 to 76,492 _64 PfGW456L13_65 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 76,492 to 77,226 _65 PfGW456L13_66 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 77,223 to 77,849 _66 PfGW456L13_67 - Cobalamin biosynthesis protein CobG, at 77,842 to 79,113 _67 Position (kb) 76 77 78Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.613 kb on + strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.614 kb on - strand, within PfGW456L13_64at 75.647 kb on + strand, within PfGW456L13_64at 75.876 kb on + strand, within PfGW456L13_64at 75.876 kb on + strand, within PfGW456L13_64at 75.877 kb on - strand, within PfGW456L13_64at 75.877 kb on - strand, within PfGW456L13_64at 76.062 kb on + strand, within PfGW456L13_64at 76.062 kb on + strand, within PfGW456L13_64at 76.063 kb on - strand, within PfGW456L13_64at 76.169 kb on + strand, within PfGW456L13_64at 76.170 kb on - strand, within PfGW456L13_64at 76.170 kb on - strand, within PfGW456L13_64at 76.326 kb on + strandat 76.359 kb on + strandat 76.360 kb on - strandat 76.416 kb on + strandat 76.416 kb on + strandat 76.417 kb on - strandat 76.429 kb on + strandat 76.430 kb on - strandat 76.430 kb on - strandat 76.432 kb on + strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.433 kb on - strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.607 kb on + strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.608 kb on - strand, within PfGW456L13_65at 76.769 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.868 kb on + strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.869 kb on - strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.874 kb on + strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.875 kb on - strand, within PfGW456L13_65at 76.883 kb on + strand, within PfGW456L13_65at 76.883 kb on + strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.884 kb on - strand, within PfGW456L13_65at 76.967 kb on + strand, within PfGW456L13_65at 76.968 kb on - strand, within PfGW456L13_65at 76.968 kb on - strand, within PfGW456L13_65at 76.991 kb on + strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 76.992 kb on - strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.117 kb on + strand, within PfGW456L13_65at 77.118 kb on - strand, within PfGW456L13_65at 77.118 kb on - strand, within PfGW456L13_65at 77.425 kb on + strand, within PfGW456L13_66at 77.425 kb on + strand, within PfGW456L13_66at 77.425 kb on + strand, within PfGW456L13_66at 77.815 kb on + strandat 77.815 kb on + strandat 77.816 kb on - strandat 77.816 kb on - strandat 77.816 kb on - strandat 77.816 kb on - strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.839 kb on + strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.840 kb on - strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.901 kb on + strandat 77.901 kb on + strandat 77.902 kb on - strandat 77.902 kb on - strandat 77.902 kb on - strandat 77.902 kb on - strandat 77.964 kb on - strandat 77.964 kb on - strandat 77.987 kb on - strand, within PfGW456L13_67at 77.987 kb on - strand, within PfGW456L13_67at 78.078 kb on + strand, within PfGW456L13_67at 78.079 kb on - strand, within PfGW456L13_67at 78.079 kb on - strand, within PfGW456L13_67at 78.079 kb on - strand, within PfGW456L13_67at 78.121 kb on - strand, within PfGW456L13_67

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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75,613 + PfGW456L13_64 0.48 +0.3
75,613 + PfGW456L13_64 0.48 +0.1
75,613 + PfGW456L13_64 0.48 -0.7
75,613 + PfGW456L13_64 0.48 -1.7
75,613 + PfGW456L13_64 0.48 -1.8
75,613 + PfGW456L13_64 0.48 -1.9
75,613 + PfGW456L13_64 0.48 +0.9
75,613 + PfGW456L13_64 0.48 -2.9
75,614 - PfGW456L13_64 0.49 -0.2
75,614 - PfGW456L13_64 0.49 +0.0
75,614 - PfGW456L13_64 0.49 -3.2
75,614 - PfGW456L13_64 0.49 +1.4
75,614 - PfGW456L13_64 0.49 +0.4
75,614 - PfGW456L13_64 0.49 +0.7
75,647 + PfGW456L13_64 0.50 +1.0
75,876 + PfGW456L13_64 0.64 +0.6
75,876 + PfGW456L13_64 0.64 -2.6
75,877 - PfGW456L13_64 0.64 -0.2
75,877 - PfGW456L13_64 0.64 +0.8
76,062 + PfGW456L13_64 0.75 -2.9
76,062 + PfGW456L13_64 0.75 +0.3
76,063 - PfGW456L13_64 0.75 +1.0
76,169 + PfGW456L13_64 0.81 -0.7
76,170 - PfGW456L13_64 0.81 -1.0
76,170 - PfGW456L13_64 0.81 +0.7
76,326 + -3.2
76,359 + -1.6
76,360 - +0.6
76,416 + +0.6
76,416 + -4.2
76,417 - +0.0
76,429 + +0.5
76,430 - -1.7
76,430 - -2.7
76,432 + -1.6
76,433 - -0.5
76,433 - +0.5
76,433 - +0.9
76,433 - -2.2
76,535 + -2.7
76,535 + -2.0
76,607 + PfGW456L13_65 0.16 +0.0
76,608 - PfGW456L13_65 0.16 -4.0
76,608 - PfGW456L13_65 0.16 -1.1
76,608 - PfGW456L13_65 0.16 -3.6
76,608 - PfGW456L13_65 0.16 -1.4
76,608 - PfGW456L13_65 0.16 +1.3
76,769 + PfGW456L13_65 0.38 -2.4
76,868 + PfGW456L13_65 0.51 -2.9
76,868 + PfGW456L13_65 0.51 -1.0
76,868 + PfGW456L13_65 0.51 -2.2
76,868 + PfGW456L13_65 0.51 +0.2
76,868 + PfGW456L13_65 0.51 -2.4
76,869 - PfGW456L13_65 0.51 -0.7
76,869 - PfGW456L13_65 0.51 -3.0
76,869 - PfGW456L13_65 0.51 -1.7
76,869 - PfGW456L13_65 0.51 -0.6
76,869 - PfGW456L13_65 0.51 -4.4
76,869 - PfGW456L13_65 0.51 +1.2
76,869 - PfGW456L13_65 0.51 +0.8
76,869 - PfGW456L13_65 0.51 +0.1
76,874 + PfGW456L13_65 0.52 -2.3
76,874 + PfGW456L13_65 0.52 -0.3
76,874 + PfGW456L13_65 0.52 -2.1
76,874 + PfGW456L13_65 0.52 -0.8
76,874 + PfGW456L13_65 0.52 -0.0
76,874 + PfGW456L13_65 0.52 -1.5
76,874 + PfGW456L13_65 0.52 +0.2
76,874 + PfGW456L13_65 0.52 -0.5
76,874 + PfGW456L13_65 0.52 -2.9
76,874 + PfGW456L13_65 0.52 -0.2
76,875 - PfGW456L13_65 0.52 +0.7
76,875 - PfGW456L13_65 0.52 +1.6
76,875 - PfGW456L13_65 0.52 -2.0
76,875 - PfGW456L13_65 0.52 -0.7
76,875 - PfGW456L13_65 0.52 -0.2
76,875 - PfGW456L13_65 0.52 +1.0
76,875 - PfGW456L13_65 0.52 -0.2
76,875 - PfGW456L13_65 0.52 -1.7
76,875 - PfGW456L13_65 0.52 +0.9
76,875 - PfGW456L13_65 0.52 -1.0
76,875 - PfGW456L13_65 0.52 -1.5
76,883 + PfGW456L13_65 0.53 +0.6
76,883 + PfGW456L13_65 0.53 -0.7
76,884 - PfGW456L13_65 0.53 +0.1
76,884 - PfGW456L13_65 0.53 -2.2
76,884 - PfGW456L13_65 0.53 -2.8
76,884 - PfGW456L13_65 0.53 -3.9
76,967 + PfGW456L13_65 0.65 -1.7
76,968 - PfGW456L13_65 0.65 -0.7
76,968 - PfGW456L13_65 0.65 -2.5
76,991 + PfGW456L13_65 0.68 -0.7
76,992 - PfGW456L13_65 0.68 +0.8
76,992 - PfGW456L13_65 0.68 +1.3
76,992 - PfGW456L13_65 0.68 -0.5
77,117 + PfGW456L13_65 0.85 -0.7
77,117 + PfGW456L13_65 0.85 -2.7
77,117 + PfGW456L13_65 0.85 -3.0
77,117 + PfGW456L13_65 0.85 -1.7
77,118 - PfGW456L13_65 0.85 +0.7
77,118 - PfGW456L13_65 0.85 +0.1
77,425 + PfGW456L13_66 0.32 +1.3
77,425 + PfGW456L13_66 0.32 -2.7
77,425 + PfGW456L13_66 0.32 -1.2
77,815 + +0.6
77,815 + -2.9
77,816 - -0.7
77,816 - -0.4
77,816 - -0.7
77,816 - +0.9
77,839 + +1.5
77,839 + +0.4
77,839 + -3.0
77,839 + +0.9
77,839 + -3.4
77,839 + -0.1
77,839 + +1.8
77,840 - -2.8
77,840 - -3.4
77,840 - -3.5
77,840 - -4.2
77,840 - +0.1
77,840 - -3.3
77,840 - -2.1
77,840 - -4.0
77,840 - -1.2
77,840 - -0.2
77,840 - +0.0
77,898 + -2.8
77,898 + +0.5
77,898 + -1.3
77,898 + -0.5
77,899 - +0.3
77,899 - +0.5
77,899 - -2.7
77,899 - +0.2
77,899 - -0.4
77,899 - -2.9
77,901 + -1.9
77,901 + -1.2
77,902 - +0.1
77,902 - -0.4
77,902 - +0.8
77,902 - -0.9
77,964 - -0.4
77,964 - -2.3
77,987 - PfGW456L13_67 0.11 +0.5
77,987 - PfGW456L13_67 0.11 -1.3
78,078 + PfGW456L13_67 0.19 -3.6
78,079 - PfGW456L13_67 0.19 +1.7
78,079 - PfGW456L13_67 0.19 -2.6
78,079 - PfGW456L13_67 0.19 -0.2
78,121 - PfGW456L13_67 0.22 +0.8

Or see this region's nucleotide sequence