Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_525

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_524 and PfGW456L13_525 overlap by 4 nucleotidesPfGW456L13_525 and PfGW456L13_526 are separated by 26 nucleotides PfGW456L13_524 - Outer membrane component of tripartite multidrug resistance system, at 603,877 to 605,454 _524 PfGW456L13_525 - Membrane fusion component of tripartite multidrug resistance system, at 605,451 to 606,515 _525 PfGW456L13_526 - Inner membrane component of tripartite multidrug resistance system, at 606,542 to 608,074 _526 Position (kb) 605 606 607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 604.525 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.779 kb on - strand, within PfGW456L13_524at 604.779 kb on - strand, within PfGW456L13_524at 604.779 kb on - strand, within PfGW456L13_524at 604.984 kb on - strand, within PfGW456L13_524at 604.984 kb on - strand, within PfGW456L13_524at 604.986 kb on + strand, within PfGW456L13_524at 604.986 kb on + strand, within PfGW456L13_524at 604.987 kb on - strand, within PfGW456L13_524at 605.000 kb on + strand, within PfGW456L13_524at 605.000 kb on + strand, within PfGW456L13_524at 605.001 kb on - strand, within PfGW456L13_524at 605.001 kb on - strand, within PfGW456L13_524at 605.001 kb on - strand, within PfGW456L13_524at 605.281 kb on + strand, within PfGW456L13_524at 605.281 kb on + strand, within PfGW456L13_524at 605.282 kb on - strand, within PfGW456L13_524at 605.282 kb on - strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.292 kb on + strand, within PfGW456L13_524at 605.293 kb on - strand, within PfGW456L13_524at 605.293 kb on - strand, within PfGW456L13_524at 605.293 kb on - strand, within PfGW456L13_524at 605.293 kb on - strand, within PfGW456L13_524at 605.383 kb on + strandat 605.384 kb on - strandat 605.384 kb on - strandat 605.384 kb on - strandat 605.384 kb on - strandat 605.580 kb on + strand, within PfGW456L13_525at 605.767 kb on + strand, within PfGW456L13_525at 605.767 kb on + strand, within PfGW456L13_525at 605.767 kb on + strand, within PfGW456L13_525at 605.767 kb on + strand, within PfGW456L13_525at 605.767 kb on + strand, within PfGW456L13_525at 605.767 kb on + strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.768 kb on - strand, within PfGW456L13_525at 605.819 kb on - strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.879 kb on + strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.880 kb on - strand, within PfGW456L13_525at 605.881 kb on + strand, within PfGW456L13_525at 605.882 kb on - strand, within PfGW456L13_525at 605.882 kb on - strand, within PfGW456L13_525at 605.882 kb on - strand, within PfGW456L13_525at 605.894 kb on - strand, within PfGW456L13_525at 606.264 kb on + strand, within PfGW456L13_525at 606.264 kb on + strand, within PfGW456L13_525at 606.264 kb on + strand, within PfGW456L13_525at 606.265 kb on - strand, within PfGW456L13_525at 606.265 kb on - strand, within PfGW456L13_525at 606.265 kb on - strand, within PfGW456L13_525at 606.342 kb on - strand, within PfGW456L13_525at 606.342 kb on - strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.388 kb on + strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.389 kb on - strand, within PfGW456L13_525at 606.413 kb on + strandat 606.413 kb on + strandat 606.413 kb on + strandat 606.414 kb on - strandat 606.414 kb on - strandat 606.446 kb on - strandat 606.528 kb on + strandat 606.528 kb on + strandat 606.529 kb on - strandat 606.564 kb on + strandat 606.564 kb on + strandat 606.630 kb on + strandat 606.630 kb on + strandat 606.631 kb on - strandat 606.933 kb on + strand, within PfGW456L13_526at 606.933 kb on + strandat 606.933 kb on + strand, within PfGW456L13_526at 606.933 kb on + strand, within PfGW456L13_526at 606.933 kb on + strand, within PfGW456L13_526at 606.933 kb on + strand, within PfGW456L13_526at 606.933 kb on + strand, within PfGW456L13_526at 606.933 kb on + strand, within PfGW456L13_526at 606.934 kb on - strand, within PfGW456L13_526at 606.934 kb on - strand, within PfGW456L13_526at 606.934 kb on - strand, within PfGW456L13_526at 606.934 kb on - strand, within PfGW456L13_526at 607.149 kb on + strand, within PfGW456L13_526at 607.149 kb on + strand, within PfGW456L13_526at 607.162 kb on + strand, within PfGW456L13_526at 607.163 kb on - strand, within PfGW456L13_526at 607.412 kb on + strand, within PfGW456L13_526

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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604,525 + PfGW456L13_524 0.41 -2.1
604,778 + PfGW456L13_524 0.57 -0.2
604,778 + PfGW456L13_524 0.57 -3.1
604,778 + PfGW456L13_524 0.57 -0.4
604,778 + PfGW456L13_524 0.57 +0.8
604,778 + PfGW456L13_524 0.57 +0.2
604,778 + PfGW456L13_524 0.57 -0.2
604,778 + PfGW456L13_524 0.57 +0.5
604,778 + PfGW456L13_524 0.57 -0.8
604,779 - PfGW456L13_524 0.57 +0.4
604,779 - PfGW456L13_524 0.57 -0.2
604,779 - PfGW456L13_524 0.57 -2.9
604,984 - PfGW456L13_524 0.70 -1.0
604,984 - PfGW456L13_524 0.70 -2.0
604,986 + PfGW456L13_524 0.70 +0.2
604,986 + PfGW456L13_524 0.70 +1.8
604,987 - PfGW456L13_524 0.70 +0.7
605,000 + PfGW456L13_524 0.71 -0.3
605,000 + PfGW456L13_524 0.71 +1.0
605,001 - PfGW456L13_524 0.71 -0.5
605,001 - PfGW456L13_524 0.71 -3.9
605,001 - PfGW456L13_524 0.71 -0.1
605,281 + PfGW456L13_524 0.89 +0.3
605,281 + PfGW456L13_524 0.89 +0.6
605,282 - PfGW456L13_524 0.89 -4.4
605,282 - PfGW456L13_524 0.89 -1.4
605,292 + PfGW456L13_524 0.90 -2.0
605,292 + PfGW456L13_524 0.90 -1.4
605,292 + PfGW456L13_524 0.90 -2.0
605,292 + PfGW456L13_524 0.90 +0.0
605,292 + PfGW456L13_524 0.90 -1.0
605,292 + PfGW456L13_524 0.90 -3.8
605,292 + PfGW456L13_524 0.90 -0.1
605,292 + PfGW456L13_524 0.90 -0.8
605,293 - PfGW456L13_524 0.90 +1.0
605,293 - PfGW456L13_524 0.90 -1.2
605,293 - PfGW456L13_524 0.90 +0.2
605,293 - PfGW456L13_524 0.90 -1.0
605,383 + +0.8
605,384 - -0.2
605,384 - +0.6
605,384 - -1.9
605,384 - +2.9
605,580 + PfGW456L13_525 0.12 +2.2
605,767 + PfGW456L13_525 0.30 +1.6
605,767 + PfGW456L13_525 0.30 +0.1
605,767 + PfGW456L13_525 0.30 +1.4
605,767 + PfGW456L13_525 0.30 +1.6
605,767 + PfGW456L13_525 0.30 -3.8
605,767 + PfGW456L13_525 0.30 -3.0
605,768 - PfGW456L13_525 0.30 -1.2
605,768 - PfGW456L13_525 0.30 -0.5
605,768 - PfGW456L13_525 0.30 -3.6
605,768 - PfGW456L13_525 0.30 +0.7
605,768 - PfGW456L13_525 0.30 +1.4
605,768 - PfGW456L13_525 0.30 +1.5
605,768 - PfGW456L13_525 0.30 -1.0
605,768 - PfGW456L13_525 0.30 +2.8
605,768 - PfGW456L13_525 0.30 -0.7
605,768 - PfGW456L13_525 0.30 -3.2
605,819 - PfGW456L13_525 0.35 -0.4
605,879 + PfGW456L13_525 0.40 -0.1
605,879 + PfGW456L13_525 0.40 -3.0
605,879 + PfGW456L13_525 0.40 +0.5
605,879 + PfGW456L13_525 0.40 -2.8
605,879 + PfGW456L13_525 0.40 +0.1
605,879 + PfGW456L13_525 0.40 +1.1
605,879 + PfGW456L13_525 0.40 +2.0
605,880 - PfGW456L13_525 0.40 +2.6
605,880 - PfGW456L13_525 0.40 +0.7
605,880 - PfGW456L13_525 0.40 +1.9
605,880 - PfGW456L13_525 0.40 +0.5
605,880 - PfGW456L13_525 0.40 -0.6
605,880 - PfGW456L13_525 0.40 -2.0
605,880 - PfGW456L13_525 0.40 -0.9
605,880 - PfGW456L13_525 0.40 -3.5
605,880 - PfGW456L13_525 0.40 +0.8
605,880 - PfGW456L13_525 0.40 +0.6
605,880 - PfGW456L13_525 0.40 +0.2
605,880 - PfGW456L13_525 0.40 -3.4
605,880 - PfGW456L13_525 0.40 +0.1
605,880 - PfGW456L13_525 0.40 +1.3
605,880 - PfGW456L13_525 0.40 +0.4
605,880 - PfGW456L13_525 0.40 -1.4
605,880 - PfGW456L13_525 0.40 -1.4
605,880 - PfGW456L13_525 0.40 -0.5
605,881 + PfGW456L13_525 0.40 +0.5
605,882 - PfGW456L13_525 0.40 +0.8
605,882 - PfGW456L13_525 0.40 -4.2
605,882 - PfGW456L13_525 0.40 +1.4
605,894 - PfGW456L13_525 0.42 -1.9
606,264 + PfGW456L13_525 0.76 +1.7
606,264 + PfGW456L13_525 0.76 +0.2
606,264 + PfGW456L13_525 0.76 +1.3
606,265 - PfGW456L13_525 0.76 +0.0
606,265 - PfGW456L13_525 0.76 +0.6
606,265 - PfGW456L13_525 0.76 +2.6
606,342 - PfGW456L13_525 0.84 -2.9
606,342 - PfGW456L13_525 0.84 +0.5
606,388 + PfGW456L13_525 0.88 +0.5
606,388 + PfGW456L13_525 0.88 -0.9
606,388 + PfGW456L13_525 0.88 +1.4
606,388 + PfGW456L13_525 0.88 +1.9
606,388 + PfGW456L13_525 0.88 -1.9
606,388 + PfGW456L13_525 0.88 -0.8
606,388 + PfGW456L13_525 0.88 -1.4
606,388 + PfGW456L13_525 0.88 +0.3
606,388 + PfGW456L13_525 0.88 +0.6
606,388 + PfGW456L13_525 0.88 +1.3
606,388 + PfGW456L13_525 0.88 -1.6
606,388 + PfGW456L13_525 0.88 -2.3
606,388 + PfGW456L13_525 0.88 +1.8
606,388 + PfGW456L13_525 0.88 -2.5
606,389 - PfGW456L13_525 0.88 -0.3
606,389 - PfGW456L13_525 0.88 +1.8
606,389 - PfGW456L13_525 0.88 +1.5
606,389 - PfGW456L13_525 0.88 +0.9
606,389 - PfGW456L13_525 0.88 -1.3
606,389 - PfGW456L13_525 0.88 +1.4
606,389 - PfGW456L13_525 0.88 -3.2
606,389 - PfGW456L13_525 0.88 -0.2
606,389 - PfGW456L13_525 0.88 -2.7
606,389 - PfGW456L13_525 0.88 -2.8
606,389 - PfGW456L13_525 0.88 +1.9
606,389 - PfGW456L13_525 0.88 -1.9
606,389 - PfGW456L13_525 0.88 -1.7
606,389 - PfGW456L13_525 0.88 -3.3
606,389 - PfGW456L13_525 0.88 -3.8
606,389 - PfGW456L13_525 0.88 -0.1
606,413 + +1.0
606,413 + +1.4
606,413 + -0.4
606,414 - -0.1
606,414 - -2.3
606,446 - -0.0
606,528 + +1.6
606,528 + +0.6
606,529 - -0.4
606,564 + +0.5
606,564 + +1.6
606,630 + +1.0
606,630 + -2.7
606,631 - +0.4
606,933 + PfGW456L13_526 0.26 +1.1
606,933 + -0.2
606,933 + PfGW456L13_526 0.26 -3.0
606,933 + PfGW456L13_526 0.26 +2.3
606,933 + PfGW456L13_526 0.26 -3.3
606,933 + PfGW456L13_526 0.26 -1.1
606,933 + PfGW456L13_526 0.26 -1.7
606,933 + PfGW456L13_526 0.26 -3.1
606,934 - PfGW456L13_526 0.26 -1.2
606,934 - PfGW456L13_526 0.26 +0.4
606,934 - PfGW456L13_526 0.26 +0.0
606,934 - PfGW456L13_526 0.26 +2.0
607,149 + PfGW456L13_526 0.40 +0.5
607,149 + PfGW456L13_526 0.40 -0.8
607,162 + PfGW456L13_526 0.40 -0.3
607,163 - PfGW456L13_526 0.41 +0.6
607,412 + PfGW456L13_526 0.57 +1.0

Or see this region's nucleotide sequence