Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5117

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5116 and PfGW456L13_5117 overlap by 4 nucleotidesPfGW456L13_5117 and PfGW456L13_5118 overlap by 4 nucleotides PfGW456L13_5116 - Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF, at 5,706,991 to 5,708,448 _5116 PfGW456L13_5117 - Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG, at 5,708,445 to 5,709,116 _5117 PfGW456L13_5118 - D-lactate dehydrogenase (quinone), FeS subunit (EC 1.1.5.12) (from data), at 5,709,113 to 5,711,923 _5118 Position (kb) 5708 5709 5710Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.538 kb on - strand, within PfGW456L13_5116at 5707.550 kb on + strand, within PfGW456L13_5116at 5707.550 kb on + strand, within PfGW456L13_5116at 5707.551 kb on - strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.817 kb on - strand, within PfGW456L13_5116at 5707.817 kb on - strand, within PfGW456L13_5116at 5707.817 kb on - strand, within PfGW456L13_5116at 5707.884 kb on - strand, within PfGW456L13_5116at 5707.965 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5708.008 kb on + strand, within PfGW456L13_5116at 5708.008 kb on + strand, within PfGW456L13_5116at 5708.294 kb on - strand, within PfGW456L13_5116at 5708.334 kb on + strandat 5708.335 kb on - strandat 5708.335 kb on - strandat 5708.335 kb on - strandat 5708.462 kb on + strandat 5708.480 kb on + strandat 5708.481 kb on - strandat 5708.544 kb on + strand, within PfGW456L13_5117at 5708.544 kb on + strand, within PfGW456L13_5117at 5708.545 kb on - strand, within PfGW456L13_5117at 5708.545 kb on - strand, within PfGW456L13_5117at 5708.545 kb on - strand, within PfGW456L13_5117at 5708.550 kb on + strand, within PfGW456L13_5117at 5708.550 kb on + strand, within PfGW456L13_5117at 5708.551 kb on - strand, within PfGW456L13_5117at 5708.739 kb on - strand, within PfGW456L13_5117at 5708.767 kb on - strand, within PfGW456L13_5117at 5708.864 kb on + strand, within PfGW456L13_5117at 5708.961 kb on + strand, within PfGW456L13_5117at 5709.006 kb on - strand, within PfGW456L13_5117at 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.112 kb on + strandat 5709.113 kb on - strandat 5709.113 kb on - strandat 5709.113 kb on - strandat 5709.113 kb on - strandat 5709.113 kb on - strandat 5709.113 kb on - strandat 5709.113 kb on - strandat 5709.221 kb on + strandat 5709.222 kb on - strandat 5709.222 kb on - strandat 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.588 kb on - strand, within PfGW456L13_5118at 5709.733 kb on + strand, within PfGW456L13_5118at 5709.764 kb on + strand, within PfGW456L13_5118at 5709.765 kb on - strand, within PfGW456L13_5118at 5709.765 kb on - strand, within PfGW456L13_5118at 5709.829 kb on + strand, within PfGW456L13_5118at 5709.890 kb on + strand, within PfGW456L13_5118at 5709.890 kb on + strand, within PfGW456L13_5118at 5709.890 kb on + strand, within PfGW456L13_5118at 5709.890 kb on + strand, within PfGW456L13_5118at 5709.891 kb on - strand, within PfGW456L13_5118at 5709.891 kb on - strand, within PfGW456L13_5118at 5710.065 kb on + strand, within PfGW456L13_5118at 5710.066 kb on - strand, within PfGW456L13_5118

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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5,707,466 + PfGW456L13_5116 0.33 -3.1
5,707,466 + PfGW456L13_5116 0.33 -2.5
5,707,466 + PfGW456L13_5116 0.33 -1.9
5,707,466 + PfGW456L13_5116 0.33 -4.1
5,707,466 + PfGW456L13_5116 0.33 -3.4
5,707,466 + PfGW456L13_5116 0.33 -1.5
5,707,466 + PfGW456L13_5116 0.33 +1.5
5,707,466 + PfGW456L13_5116 0.33 -3.6
5,707,466 + PfGW456L13_5116 0.33 -3.8
5,707,466 + PfGW456L13_5116 0.33 -3.7
5,707,466 + PfGW456L13_5116 0.33 -2.3
5,707,466 + PfGW456L13_5116 0.33 -4.8
5,707,466 + PfGW456L13_5116 0.33 -3.8
5,707,466 + PfGW456L13_5116 0.33 -3.5
5,707,466 + PfGW456L13_5116 0.33 -3.2
5,707,466 + PfGW456L13_5116 0.33 -0.1
5,707,466 + PfGW456L13_5116 0.33 -3.5
5,707,466 + PfGW456L13_5116 0.33 -3.8
5,707,466 + PfGW456L13_5116 0.33 -1.1
5,707,466 + PfGW456L13_5116 0.33 -3.8
5,707,466 + PfGW456L13_5116 0.33 -0.5
5,707,467 - PfGW456L13_5116 0.33 -3.8
5,707,467 - PfGW456L13_5116 0.33 -4.3
5,707,467 - PfGW456L13_5116 0.33 -2.6
5,707,467 - PfGW456L13_5116 0.33 -2.4
5,707,467 - PfGW456L13_5116 0.33 -4.4
5,707,467 - PfGW456L13_5116 0.33 -2.1
5,707,467 - PfGW456L13_5116 0.33 -2.5
5,707,467 - PfGW456L13_5116 0.33 -2.3
5,707,467 - PfGW456L13_5116 0.33 -2.3
5,707,537 + PfGW456L13_5116 0.37 -3.0
5,707,537 + PfGW456L13_5116 0.37 -2.7
5,707,537 + PfGW456L13_5116 0.37 -2.1
5,707,537 + PfGW456L13_5116 0.37 -3.4
5,707,538 - PfGW456L13_5116 0.38 -3.3
5,707,550 + PfGW456L13_5116 0.38 -2.2
5,707,550 + PfGW456L13_5116 0.38 -3.1
5,707,551 - PfGW456L13_5116 0.38 -3.8
5,707,816 + PfGW456L13_5116 0.57 -2.5
5,707,816 + PfGW456L13_5116 0.57 -4.9
5,707,816 + PfGW456L13_5116 0.57 -2.6
5,707,816 + PfGW456L13_5116 0.57 -3.6
5,707,816 + PfGW456L13_5116 0.57 -1.9
5,707,817 - PfGW456L13_5116 0.57 -4.6
5,707,817 - PfGW456L13_5116 0.57 -2.8
5,707,817 - PfGW456L13_5116 0.57 -0.9
5,707,884 - PfGW456L13_5116 0.61 -3.1
5,707,965 + PfGW456L13_5116 0.67 -4.5
5,707,984 + PfGW456L13_5116 0.68 -3.9
5,707,984 + PfGW456L13_5116 0.68 -2.4
5,707,984 + PfGW456L13_5116 0.68 -2.4
5,707,984 + PfGW456L13_5116 0.68 -3.8
5,707,984 + PfGW456L13_5116 0.68 -3.1
5,707,985 - PfGW456L13_5116 0.68 -4.3
5,707,985 - PfGW456L13_5116 0.68 +0.5
5,707,985 - PfGW456L13_5116 0.68 -3.2
5,707,985 - PfGW456L13_5116 0.68 -2.9
5,708,008 + PfGW456L13_5116 0.70 -3.7
5,708,008 + PfGW456L13_5116 0.70 +0.9
5,708,294 - PfGW456L13_5116 0.89 -1.8
5,708,334 + +0.5
5,708,335 - -1.6
5,708,335 - -3.6
5,708,335 - -3.6
5,708,462 + -3.5
5,708,480 + -4.3
5,708,481 - -1.9
5,708,544 + PfGW456L13_5117 0.15 -0.5
5,708,544 + PfGW456L13_5117 0.15 -3.1
5,708,545 - PfGW456L13_5117 0.15 -2.6
5,708,545 - PfGW456L13_5117 0.15 -4.4
5,708,545 - PfGW456L13_5117 0.15 -3.1
5,708,550 + PfGW456L13_5117 0.16 -0.5
5,708,550 + PfGW456L13_5117 0.16 -3.8
5,708,551 - PfGW456L13_5117 0.16 -2.6
5,708,739 - PfGW456L13_5117 0.44 -3.8
5,708,767 - PfGW456L13_5117 0.48 +0.5
5,708,864 + PfGW456L13_5117 0.62 -1.8
5,708,961 + PfGW456L13_5117 0.77 -3.5
5,709,006 - PfGW456L13_5117 0.83 -3.6
5,709,112 + -3.7
5,709,112 + -4.1
5,709,112 + -1.3
5,709,112 + -4.6
5,709,112 + -1.4
5,709,112 + -3.2
5,709,112 + -1.6
5,709,112 + -3.4
5,709,112 + -3.3
5,709,113 - -0.5
5,709,113 - -3.2
5,709,113 - -3.6
5,709,113 - -2.6
5,709,113 - -2.5
5,709,113 - -2.4
5,709,113 - -3.8
5,709,221 + +0.9
5,709,222 - -1.6
5,709,222 - +0.6
5,709,588 - PfGW456L13_5118 0.17 +0.5
5,709,588 - PfGW456L13_5118 0.17 +1.3
5,709,588 - PfGW456L13_5118 0.17 -0.1
5,709,588 - PfGW456L13_5118 0.17 +1.9
5,709,588 - PfGW456L13_5118 0.17 -0.6
5,709,588 - PfGW456L13_5118 0.17 +0.3
5,709,588 - PfGW456L13_5118 0.17 -3.8
5,709,588 - PfGW456L13_5118 0.17 +1.2
5,709,588 - PfGW456L13_5118 0.17 -0.4
5,709,588 - PfGW456L13_5118 0.17 -3.3
5,709,733 + PfGW456L13_5118 0.22 +0.5
5,709,764 + PfGW456L13_5118 0.23 +2.3
5,709,765 - PfGW456L13_5118 0.23 +2.0
5,709,765 - PfGW456L13_5118 0.23 +0.4
5,709,829 + PfGW456L13_5118 0.25 -1.9
5,709,890 + PfGW456L13_5118 0.28 -1.6
5,709,890 + PfGW456L13_5118 0.28 +0.7
5,709,890 + PfGW456L13_5118 0.28 +1.0
5,709,890 + PfGW456L13_5118 0.28 +2.3
5,709,891 - PfGW456L13_5118 0.28 +1.8
5,709,891 - PfGW456L13_5118 0.28 -2.0
5,710,065 + PfGW456L13_5118 0.34 +1.4
5,710,066 - PfGW456L13_5118 0.34 +0.5

Or see this region's nucleotide sequence