Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5116 and PfGW456L13_5117 overlap by 4 nucleotides PfGW456L13_5117 and PfGW456L13_5118 overlap by 4 nucleotides
PfGW456L13_5116 - Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF, at 5,706,991 to 5,708,448
_5116
PfGW456L13_5117 - Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG, at 5,708,445 to 5,709,116
_5117
PfGW456L13_5118 - D-lactate dehydrogenase (quinone), FeS subunit (EC 1.1.5.12) (from data) , at 5,709,113 to 5,711,923
_5118
Position (kb)
5708
5709
5710 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.466 kb on + strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.467 kb on - strand, within PfGW456L13_5116 at 5707.537 kb on + strand, within PfGW456L13_5116 at 5707.537 kb on + strand, within PfGW456L13_5116 at 5707.537 kb on + strand, within PfGW456L13_5116 at 5707.537 kb on + strand, within PfGW456L13_5116 at 5707.538 kb on - strand, within PfGW456L13_5116 at 5707.550 kb on + strand, within PfGW456L13_5116 at 5707.550 kb on + strand, within PfGW456L13_5116 at 5707.551 kb on - strand, within PfGW456L13_5116 at 5707.816 kb on + strand, within PfGW456L13_5116 at 5707.816 kb on + strand, within PfGW456L13_5116 at 5707.816 kb on + strand, within PfGW456L13_5116 at 5707.816 kb on + strand, within PfGW456L13_5116 at 5707.816 kb on + strand, within PfGW456L13_5116 at 5707.817 kb on - strand, within PfGW456L13_5116 at 5707.817 kb on - strand, within PfGW456L13_5116 at 5707.817 kb on - strand, within PfGW456L13_5116 at 5707.884 kb on - strand, within PfGW456L13_5116 at 5707.965 kb on + strand, within PfGW456L13_5116 at 5707.984 kb on + strand, within PfGW456L13_5116 at 5707.984 kb on + strand, within PfGW456L13_5116 at 5707.984 kb on + strand, within PfGW456L13_5116 at 5707.984 kb on + strand, within PfGW456L13_5116 at 5707.984 kb on + strand, within PfGW456L13_5116 at 5707.985 kb on - strand, within PfGW456L13_5116 at 5707.985 kb on - strand, within PfGW456L13_5116 at 5707.985 kb on - strand, within PfGW456L13_5116 at 5707.985 kb on - strand, within PfGW456L13_5116 at 5708.008 kb on + strand, within PfGW456L13_5116 at 5708.008 kb on + strand, within PfGW456L13_5116 at 5708.294 kb on - strand, within PfGW456L13_5116 at 5708.334 kb on + strand at 5708.335 kb on - strand at 5708.335 kb on - strand at 5708.335 kb on - strand at 5708.462 kb on + strand at 5708.480 kb on + strand at 5708.481 kb on - strand at 5708.544 kb on + strand, within PfGW456L13_5117 at 5708.544 kb on + strand, within PfGW456L13_5117 at 5708.545 kb on - strand, within PfGW456L13_5117 at 5708.545 kb on - strand, within PfGW456L13_5117 at 5708.545 kb on - strand, within PfGW456L13_5117 at 5708.550 kb on + strand, within PfGW456L13_5117 at 5708.550 kb on + strand, within PfGW456L13_5117 at 5708.551 kb on - strand, within PfGW456L13_5117 at 5708.739 kb on - strand, within PfGW456L13_5117 at 5708.767 kb on - strand, within PfGW456L13_5117 at 5708.864 kb on + strand, within PfGW456L13_5117 at 5708.961 kb on + strand, within PfGW456L13_5117 at 5709.006 kb on - strand, within PfGW456L13_5117 at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.112 kb on + strand at 5709.113 kb on - strand at 5709.113 kb on - strand at 5709.113 kb on - strand at 5709.113 kb on - strand at 5709.113 kb on - strand at 5709.113 kb on - strand at 5709.113 kb on - strand at 5709.221 kb on + strand at 5709.222 kb on - strand at 5709.222 kb on - strand at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.588 kb on - strand, within PfGW456L13_5118 at 5709.733 kb on + strand, within PfGW456L13_5118 at 5709.764 kb on + strand, within PfGW456L13_5118 at 5709.765 kb on - strand, within PfGW456L13_5118 at 5709.765 kb on - strand, within PfGW456L13_5118 at 5709.829 kb on + strand, within PfGW456L13_5118 at 5709.890 kb on + strand, within PfGW456L13_5118 at 5709.890 kb on + strand, within PfGW456L13_5118 at 5709.890 kb on + strand, within PfGW456L13_5118 at 5709.890 kb on + strand, within PfGW456L13_5118 at 5709.891 kb on - strand, within PfGW456L13_5118 at 5709.891 kb on - strand, within PfGW456L13_5118 at 5710.065 kb on + strand, within PfGW456L13_5118 at 5710.066 kb on - strand, within PfGW456L13_5118
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 5,707,466 + PfGW456L13_5116 0.33 -3.1 5,707,466 + PfGW456L13_5116 0.33 -2.5 5,707,466 + PfGW456L13_5116 0.33 -1.9 5,707,466 + PfGW456L13_5116 0.33 -4.1 5,707,466 + PfGW456L13_5116 0.33 -3.4 5,707,466 + PfGW456L13_5116 0.33 -1.5 5,707,466 + PfGW456L13_5116 0.33 +1.5 5,707,466 + PfGW456L13_5116 0.33 -3.6 5,707,466 + PfGW456L13_5116 0.33 -3.8 5,707,466 + PfGW456L13_5116 0.33 -3.7 5,707,466 + PfGW456L13_5116 0.33 -2.3 5,707,466 + PfGW456L13_5116 0.33 -4.8 5,707,466 + PfGW456L13_5116 0.33 -3.8 5,707,466 + PfGW456L13_5116 0.33 -3.5 5,707,466 + PfGW456L13_5116 0.33 -3.2 5,707,466 + PfGW456L13_5116 0.33 -0.1 5,707,466 + PfGW456L13_5116 0.33 -3.5 5,707,466 + PfGW456L13_5116 0.33 -3.8 5,707,466 + PfGW456L13_5116 0.33 -1.1 5,707,466 + PfGW456L13_5116 0.33 -3.8 5,707,466 + PfGW456L13_5116 0.33 -0.5 5,707,467 - PfGW456L13_5116 0.33 -3.8 5,707,467 - PfGW456L13_5116 0.33 -4.3 5,707,467 - PfGW456L13_5116 0.33 -2.6 5,707,467 - PfGW456L13_5116 0.33 -2.4 5,707,467 - PfGW456L13_5116 0.33 -4.4 5,707,467 - PfGW456L13_5116 0.33 -2.1 5,707,467 - PfGW456L13_5116 0.33 -2.5 5,707,467 - PfGW456L13_5116 0.33 -2.3 5,707,467 - PfGW456L13_5116 0.33 -2.3 5,707,537 + PfGW456L13_5116 0.37 -3.0 5,707,537 + PfGW456L13_5116 0.37 -2.7 5,707,537 + PfGW456L13_5116 0.37 -2.1 5,707,537 + PfGW456L13_5116 0.37 -3.4 5,707,538 - PfGW456L13_5116 0.38 -3.3 5,707,550 + PfGW456L13_5116 0.38 -2.2 5,707,550 + PfGW456L13_5116 0.38 -3.1 5,707,551 - PfGW456L13_5116 0.38 -3.8 5,707,816 + PfGW456L13_5116 0.57 -2.5 5,707,816 + PfGW456L13_5116 0.57 -4.9 5,707,816 + PfGW456L13_5116 0.57 -2.6 5,707,816 + PfGW456L13_5116 0.57 -3.6 5,707,816 + PfGW456L13_5116 0.57 -1.9 5,707,817 - PfGW456L13_5116 0.57 -4.6 5,707,817 - PfGW456L13_5116 0.57 -2.8 5,707,817 - PfGW456L13_5116 0.57 -0.9 5,707,884 - PfGW456L13_5116 0.61 -3.1 5,707,965 + PfGW456L13_5116 0.67 -4.5 5,707,984 + PfGW456L13_5116 0.68 -3.9 5,707,984 + PfGW456L13_5116 0.68 -2.4 5,707,984 + PfGW456L13_5116 0.68 -2.4 5,707,984 + PfGW456L13_5116 0.68 -3.8 5,707,984 + PfGW456L13_5116 0.68 -3.1 5,707,985 - PfGW456L13_5116 0.68 -4.3 5,707,985 - PfGW456L13_5116 0.68 +0.5 5,707,985 - PfGW456L13_5116 0.68 -3.2 5,707,985 - PfGW456L13_5116 0.68 -2.9 5,708,008 + PfGW456L13_5116 0.70 -3.7 5,708,008 + PfGW456L13_5116 0.70 +0.9 5,708,294 - PfGW456L13_5116 0.89 -1.8 5,708,334 + +0.5 5,708,335 - -1.6 5,708,335 - -3.6 5,708,335 - -3.6 5,708,462 + -3.5 5,708,480 + -4.3 5,708,481 - -1.9 5,708,544 + PfGW456L13_5117 0.15 -0.5 5,708,544 + PfGW456L13_5117 0.15 -3.1 5,708,545 - PfGW456L13_5117 0.15 -2.6 5,708,545 - PfGW456L13_5117 0.15 -4.4 5,708,545 - PfGW456L13_5117 0.15 -3.1 5,708,550 + PfGW456L13_5117 0.16 -0.5 5,708,550 + PfGW456L13_5117 0.16 -3.8 5,708,551 - PfGW456L13_5117 0.16 -2.6 5,708,739 - PfGW456L13_5117 0.44 -3.8 5,708,767 - PfGW456L13_5117 0.48 +0.5 5,708,864 + PfGW456L13_5117 0.62 -1.8 5,708,961 + PfGW456L13_5117 0.77 -3.5 5,709,006 - PfGW456L13_5117 0.83 -3.6 5,709,112 + -3.7 5,709,112 + -4.1 5,709,112 + -1.3 5,709,112 + -4.6 5,709,112 + -1.4 5,709,112 + -3.2 5,709,112 + -1.6 5,709,112 + -3.4 5,709,112 + -3.3 5,709,113 - -0.5 5,709,113 - -3.2 5,709,113 - -3.6 5,709,113 - -2.6 5,709,113 - -2.5 5,709,113 - -2.4 5,709,113 - -3.8 5,709,221 + +0.9 5,709,222 - -1.6 5,709,222 - +0.6 5,709,588 - PfGW456L13_5118 0.17 +0.5 5,709,588 - PfGW456L13_5118 0.17 +1.3 5,709,588 - PfGW456L13_5118 0.17 -0.1 5,709,588 - PfGW456L13_5118 0.17 +1.9 5,709,588 - PfGW456L13_5118 0.17 -0.6 5,709,588 - PfGW456L13_5118 0.17 +0.3 5,709,588 - PfGW456L13_5118 0.17 -3.8 5,709,588 - PfGW456L13_5118 0.17 +1.2 5,709,588 - PfGW456L13_5118 0.17 -0.4 5,709,588 - PfGW456L13_5118 0.17 -3.3 5,709,733 + PfGW456L13_5118 0.22 +0.5 5,709,764 + PfGW456L13_5118 0.23 +2.3 5,709,765 - PfGW456L13_5118 0.23 +2.0 5,709,765 - PfGW456L13_5118 0.23 +0.4 5,709,829 + PfGW456L13_5118 0.25 -1.9 5,709,890 + PfGW456L13_5118 0.28 -1.6 5,709,890 + PfGW456L13_5118 0.28 +0.7 5,709,890 + PfGW456L13_5118 0.28 +1.0 5,709,890 + PfGW456L13_5118 0.28 +2.3 5,709,891 - PfGW456L13_5118 0.28 +1.8 5,709,891 - PfGW456L13_5118 0.28 -2.0 5,710,065 + PfGW456L13_5118 0.34 +1.4 5,710,066 - PfGW456L13_5118 0.34 +0.5
Or see this region's nucleotide sequence