Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_38

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_36 and PfGW456L13_37 are separated by 12 nucleotidesPfGW456L13_37 and PfGW456L13_38 overlap by 1 nucleotidesPfGW456L13_38 and PfGW456L13_39 are separated by 155 nucleotidesPfGW456L13_39 and PfGW456L13_40 are separated by 187 nucleotides PfGW456L13_36 - lipoprotein, putative, at 43,264 to 43,872 _36 PfGW456L13_37 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 43,885 to 44,634 _37 PfGW456L13_38 - FIG00953349: hypothetical protein, at 44,634 to 44,936 _38 PfGW456L13_39 - Permeases of the major facilitator superfamily, at 45,092 to 45,385 _39 PfGW456L13_40 - DNA-damage-inducible protein F, at 45,573 to 46,922 _40 Position (kb) 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 43.715 kb on + strand, within PfGW456L13_36at 43.805 kb on + strand, within PfGW456L13_36at 43.806 kb on - strand, within PfGW456L13_36at 43.806 kb on - strand, within PfGW456L13_36at 43.806 kb on - strand, within PfGW456L13_36at 43.853 kb on - strandat 43.853 kb on - strandat 43.913 kb on + strandat 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.012 kb on + strand, within PfGW456L13_37at 44.013 kb on - strand, within PfGW456L13_37at 44.013 kb on - strand, within PfGW456L13_37at 44.013 kb on - strand, within PfGW456L13_37at 44.013 kb on - strand, within PfGW456L13_37at 44.013 kb on - strand, within PfGW456L13_37at 44.180 kb on + strand, within PfGW456L13_37at 44.180 kb on + strand, within PfGW456L13_37at 44.180 kb on + strand, within PfGW456L13_37at 44.181 kb on - strand, within PfGW456L13_37at 44.181 kb on - strand, within PfGW456L13_37at 44.181 kb on - strand, within PfGW456L13_37at 44.182 kb on + strand, within PfGW456L13_37at 44.182 kb on + strand, within PfGW456L13_37at 44.182 kb on + strand, within PfGW456L13_37at 44.183 kb on - strand, within PfGW456L13_37at 44.183 kb on - strand, within PfGW456L13_37at 44.183 kb on - strand, within PfGW456L13_37at 44.183 kb on - strand, within PfGW456L13_37at 44.183 kb on - strand, within PfGW456L13_37at 44.183 kb on - strand, within PfGW456L13_37at 44.201 kb on + strand, within PfGW456L13_37at 44.202 kb on - strand, within PfGW456L13_37at 44.202 kb on - strand, within PfGW456L13_37at 44.202 kb on - strand, within PfGW456L13_37at 44.718 kb on + strand, within PfGW456L13_38at 44.718 kb on + strand, within PfGW456L13_38at 44.718 kb on + strand, within PfGW456L13_38at 44.718 kb on + strand, within PfGW456L13_38at 44.719 kb on - strand, within PfGW456L13_38at 44.719 kb on - strand, within PfGW456L13_38at 44.719 kb on - strand, within PfGW456L13_38at 44.722 kb on + strand, within PfGW456L13_38at 44.722 kb on + strand, within PfGW456L13_38at 44.722 kb on + strand, within PfGW456L13_38at 44.722 kb on + strand, within PfGW456L13_38at 44.723 kb on - strand, within PfGW456L13_38at 44.723 kb on - strand, within PfGW456L13_38at 44.723 kb on - strand, within PfGW456L13_38at 44.955 kb on + strandat 44.955 kb on + strandat 44.955 kb on + strandat 44.955 kb on + strandat 44.955 kb on + strandat 44.955 kb on + strandat 44.956 kb on - strandat 44.956 kb on - strandat 44.956 kb on - strandat 44.956 kb on - strandat 44.956 kb on - strandat 44.956 kb on - strandat 44.956 kb on - strandat 44.957 kb on + strandat 44.957 kb on + strandat 44.957 kb on + strandat 44.957 kb on + strandat 44.957 kb on + strandat 44.958 kb on - strandat 44.958 kb on - strandat 44.958 kb on - strandat 44.958 kb on - strandat 44.958 kb on - strandat 44.958 kb on - strandat 44.958 kb on - strandat 44.958 kb on - strandat 45.020 kb on + strandat 45.021 kb on - strandat 45.021 kb on - strandat 45.099 kb on + strandat 45.099 kb on + strandat 45.100 kb on - strandat 45.100 kb on - strandat 45.100 kb on - strandat 45.100 kb on - strandat 45.241 kb on + strand, within PfGW456L13_39at 45.241 kb on + strand, within PfGW456L13_39at 45.242 kb on - strand, within PfGW456L13_39at 45.506 kb on + strandat 45.506 kb on + strandat 45.507 kb on - strandat 45.507 kb on - strandat 45.507 kb on - strandat 45.523 kb on + strandat 45.523 kb on + strandat 45.523 kb on + strandat 45.524 kb on - strandat 45.524 kb on - strandat 45.524 kb on - strandat 45.524 kb on - strandat 45.524 kb on - strandat 45.524 kb on - strandat 45.527 kb on + strandat 45.527 kb on + strandat 45.527 kb on + strandat 45.528 kb on - strandat 45.544 kb on + strandat 45.544 kb on + strandat 45.544 kb on + strandat 45.753 kb on + strand, within PfGW456L13_40at 45.753 kb on + strand, within PfGW456L13_40at 45.753 kb on + strand, within PfGW456L13_40at 45.753 kb on + strand, within PfGW456L13_40at 45.754 kb on - strand, within PfGW456L13_40at 45.788 kb on + strand, within PfGW456L13_40at 45.789 kb on - strand, within PfGW456L13_40

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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43,715 + PfGW456L13_36 0.74 +0.8
43,805 + PfGW456L13_36 0.89 -2.0
43,806 - PfGW456L13_36 0.89 +1.0
43,806 - PfGW456L13_36 0.89 -1.1
43,806 - PfGW456L13_36 0.89 +1.1
43,853 - -2.8
43,853 - -3.2
43,913 + +2.2
44,012 + PfGW456L13_37 0.17 +0.4
44,012 + PfGW456L13_37 0.17 +0.8
44,012 + PfGW456L13_37 0.17 -0.1
44,012 + PfGW456L13_37 0.17 -1.8
44,012 + PfGW456L13_37 0.17 -3.5
44,012 + PfGW456L13_37 0.17 +0.4
44,012 + PfGW456L13_37 0.17 +0.0
44,012 + PfGW456L13_37 0.17 +1.9
44,012 + PfGW456L13_37 0.17 +0.0
44,012 + PfGW456L13_37 0.17 +1.4
44,012 + PfGW456L13_37 0.17 -0.7
44,013 - PfGW456L13_37 0.17 +1.5
44,013 - PfGW456L13_37 0.17 -0.4
44,013 - PfGW456L13_37 0.17 -1.0
44,013 - PfGW456L13_37 0.17 -0.9
44,013 - PfGW456L13_37 0.17 -0.8
44,180 + PfGW456L13_37 0.39 -0.1
44,180 + PfGW456L13_37 0.39 -1.7
44,180 + PfGW456L13_37 0.39 +2.1
44,181 - PfGW456L13_37 0.39 -3.3
44,181 - PfGW456L13_37 0.39 -1.3
44,181 - PfGW456L13_37 0.39 -2.1
44,182 + PfGW456L13_37 0.40 -1.0
44,182 + PfGW456L13_37 0.40 +2.3
44,182 + PfGW456L13_37 0.40 -0.1
44,183 - PfGW456L13_37 0.40 -2.8
44,183 - PfGW456L13_37 0.40 +0.3
44,183 - PfGW456L13_37 0.40 -2.5
44,183 - PfGW456L13_37 0.40 -4.0
44,183 - PfGW456L13_37 0.40 -2.9
44,183 - PfGW456L13_37 0.40 -3.2
44,201 + PfGW456L13_37 0.42 -1.8
44,202 - PfGW456L13_37 0.42 -0.5
44,202 - PfGW456L13_37 0.42 +2.3
44,202 - PfGW456L13_37 0.42 +0.8
44,718 + PfGW456L13_38 0.28 +1.9
44,718 + PfGW456L13_38 0.28 -1.5
44,718 + PfGW456L13_38 0.28 +2.2
44,718 + PfGW456L13_38 0.28 +1.2
44,719 - PfGW456L13_38 0.28 -2.2
44,719 - PfGW456L13_38 0.28 +0.0
44,719 - PfGW456L13_38 0.28 -1.9
44,722 + PfGW456L13_38 0.29 +1.7
44,722 + PfGW456L13_38 0.29 +1.0
44,722 + PfGW456L13_38 0.29 -0.7
44,722 + PfGW456L13_38 0.29 +1.2
44,723 - PfGW456L13_38 0.29 +0.5
44,723 - PfGW456L13_38 0.29 +1.9
44,723 - PfGW456L13_38 0.29 +0.3
44,955 + -1.6
44,955 + +1.0
44,955 + +0.8
44,955 + -2.3
44,955 + +0.1
44,955 + -0.1
44,956 - +1.5
44,956 - +2.3
44,956 - +2.3
44,956 - -1.6
44,956 - -0.4
44,956 - +1.0
44,956 - -3.1
44,957 + -0.7
44,957 + +0.3
44,957 + +0.6
44,957 + +0.3
44,957 + -2.4
44,958 - +2.0
44,958 - +1.3
44,958 - -1.2
44,958 - +1.0
44,958 - +1.3
44,958 - +0.3
44,958 - -4.4
44,958 - -2.4
45,020 + -3.1
45,021 - -0.3
45,021 - +1.2
45,099 + -1.6
45,099 + -3.2
45,100 - +0.6
45,100 - +1.1
45,100 - +1.0
45,100 - -0.8
45,241 + PfGW456L13_39 0.51 -3.4
45,241 + PfGW456L13_39 0.51 +0.5
45,242 - PfGW456L13_39 0.51 +0.1
45,506 + -2.1
45,506 + +0.0
45,507 - -2.9
45,507 - -3.5
45,507 - +1.2
45,523 + -0.0
45,523 + +1.5
45,523 + +1.4
45,524 - +0.2
45,524 - -2.0
45,524 - +1.7
45,524 - +3.1
45,524 - +0.2
45,524 - +2.5
45,527 + +0.6
45,527 + -0.1
45,527 + +0.9
45,528 - +1.1
45,544 + -1.4
45,544 + +0.9
45,544 + +1.1
45,753 + PfGW456L13_40 0.13 +1.9
45,753 + PfGW456L13_40 0.13 -0.4
45,753 + PfGW456L13_40 0.13 -1.6
45,753 + PfGW456L13_40 0.13 -3.2
45,754 - PfGW456L13_40 0.13 +2.1
45,788 + PfGW456L13_40 0.16 +1.2
45,789 - PfGW456L13_40 0.16 +1.1

Or see this region's nucleotide sequence